Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os01g45520 OGI:01079630 | 16/16 Nipponbare | IRGSP 1.0 | MSU Chr01:25836151-25839983
Gene Symbol SDRLP-4
DNA seq

ATGGAGGCCTCCTTGGGCGCGTTGATATTTCCGTGTTTTCTTCTGCTGATATGCGCGCGGGCAGACGACACCGTCTCCCGGAATCGGCCGCTCTCCGGCGGCCAAAGGCTTATCTCGTCCGGCGGACTTTTCGCGCTGGGGTTCTTCCAGCCTGGTACGTGGATATACATGAGCTAATAATTCAGCCCTATCATCCACTTCAAAAACTTCAGCCTATTTCGTTTGTATTTTTTATAGCAACTACTGTAGCAAGTAACAAGTGATATAGAGATTAGAGACATATTGTAAACTTCAGCTATTAGTTTATCTTGCCTCTGCTTTATATTCCAATTCTCATCGGGTTTCATTAAGTACAAAAGGTTTCAGAAAGCTTTCACCCACATTTCTGCATGTTTCGTCATAGTTCTATGCTTCTTCCAGTCCTTCAAGAAACCTTTTTTCCCCGGAAATACCTAAATTTTATATGTATAATTGCAGTAAGGACAATATGGTTTGATCAAAAACCAAAACAAAAAATAAAACGAGGTACATATAGTTTTGTTAGGCGTATGCATGTTTCAGTGAGTCTTAATTTAAATAGTTCAATCAATTTCTATGCATGTTTTGGCTATATGCCTATATATCCTGGATGTAGAGGCTAGATTGACTTCTACTATCGAAAAAATGTTTTATGCAAGTTCCGTACAAGATTTCATGGGGTAATGTTTTATAGGGGATACAAGATGGGATATCGTAAGGATGATATTCCATTCTGTCGTTAGCATATATCTTGTATAATGTTTTACAGACTTAACACGATTAATATGTTTTTTTTTTCAAAAGTACTGTTCATGGCAATTTTATAGTTTTACAGTGTGCCATCCTTGTATTGCAATAGTAATTACAAACCAAATTGATGTTTTGAACATGTTATGTGCAAAGCTTATTGCACCCCAAGATAGTACAATACTCCCTCCGTCCCAAAATATAAATGATTTTGGAGGGATGTGACACTATCTAGTATTACGATATTGTGTTACATCCCTTCAAAACCCTATGTCTAGATTTGTAGTACTATGTTGTATTACATCCCTTCAAAATCCCTTATATTATGGGATGAAGGAAATATTTTATATTGATATAATAGAAAAAGAATAGTATAAAACTATAGCCTTGGGGGGCTATAATTAGGGGAAAAAAAGAAACTACAAGCCACGCCACATGTTTCCTTTTATTTTACTTGATACTTTCAGGTTGGAGGTGAATATCTGGCTAGTGCCCTAGTAGGCATATTTTTGTGAGAAAGAAATAGGTGAGTTCTTGAAATCCACAAGGAAGGCTTCCGAAATATGCTCGTTTCATGGCATAATTCTTTTCCTTCTTTTTGTTACTTTCCCACAAGCTTTAAATTTTAACTTATATGAAAGATGGAAATATAAGAGAGAAAATATTATAATTTGTAGAAGAAGATATTTCCATGTACAACAAATGAATCATGCAGCAGTTAGCATTTGTTGAAGATGTGAAGCAAGACCTATCTTCGTTATTTCTTTCTAGATACACATACTAGTCTCTAAGCTCTAGAAGTCTTTGTCTAGTGCATTCTTGAAAACTATTATAATCTCAGTGGTTAACAATTCAGATGATAGAGCGCCTAACAGATGGTACCTTGCTATTTGGTACAACAAGATCTCAAAGACCACACCCGTCTGGATAGCAAATCGGGCGACTCCAATCTCTGATCCAAACTTATCACAGTTGACAGCATCAGAAGATGGCAATTTGGCATTGTTCGACCAGGCCAGGTCTTTGATCTGGGCCACAAATATCACTAATAACGTCAACTCCACAGTTGGAGTTATCCTTGATTCAGGCAACTTAGTGTTAGCTCCTGCCTCCAATACCTCCAATTTCCTATGGCAGAGTTTTGATGAACCGACCAATGTGTGGCTCCCTGGGGCCAAGCTTGGACGGAACAAAATTACTGGCCAAATCACAAGATTTATCTCATGGAAAAGCTCTGTTGATCCATCACCTGGGTATTATACGCTTGAGATTGACCCGAATGGTGGCGACCAGTTCATCCATCTATGGAACAATTCTGCCATCTACTGGGAAACGGGCAAATGGATTGGTAATATGTTTACTGGAATTCCTGAGATGGCATTGTATCCTAAAGAAGTTTTAAGCTACAAATTTACCGTTAACAACCAAGAGAGCTACTTTGTGTACCGAACTAATGCATCCATTGCCACAGCGATGTTTATTATGGAAATTTCAGGCCAGGTAAAAACAGTAGTATGGATGGAGAGCAAAAAAGACTGGGTGCCCTTCTTGGCACTGCCAAAAGCACAGTGCGCCGTGTACTTCCTTTGTGGTTCTTTTGCCATGTGCACTGAGAACGCCGTCACTTTCTGCAGTTGTCTCAGGGGTTTCAGCAAGCAGTACAACGGCGAGTGGCGATATGGTAATCCCAGTGGAGGTTGCATGAGAAACACTAAGCTACAATATGATGGCAATAGCTCTAGCAAGACAACAGCTGATGAATTCTATGCACTAGCTGTTGCTAAGTTGCCTGACAAAGCCTGGGGTTTGGCAACTGGTACAGATGGATGTAAGCAGGCTTGTCTGAACAATTGCTCTTGTACCGCTTATTCCTACGCTGGTGGTTGTTCTTTGTGGTATGGAGATTTAATCAATCTAGTGGCTCCTGCTGATGGTTCAGTGGGGCATAGCATCCATATCCGGCTCGCTGCATCAGAGTTCTCCAGCTAACGAGGAAGGCAACTGTTATTGGGGCTTCAACTGCTGGAGCTATCCTTGTCACCCTCATTGTGATCATTGGCATACTTCTGATTCTCAGGAAGAGGAATTTGAGTGAAGCGAACAAAGTGGAGGGTTCGTTGGTCGTATTCAGGTATAGGTTCCTACAGCATGTGACAAAAAACTTCTCTGAGAGGTTGGGCAAAGGTTCTTTTGGTCCTGTATTTAAGGGAACGTTACCTGATGGGACACTAATTGCTGTAAAGAAACTTGATGGTGTTTCTCAGGGAGAAAAGCAGTTCCGAGCTGAAGTCAGCACAATTGGCACAATTCAGCATGTGAATTTAATCCGGTTGCTGGGATTTTGCTCAGAGAGGTCCATGAAGATGCTAGTCTATGAGTTCATGCCAAATGGGTCGTTGGATCGTTACCTATTTGGAAGCACTCCATTGACTTTGAGCTGGAAGACAAGATATCAGATTGCTCTTGGAATTGCCAAGGGATTAGCTTACTTGCATGAGAAATGCAGGAGCCTCATCATACACTGTGATATAAAGCCAGAGAATGTACTCCTAGGTGCTGATTTCATGCCAAAGATCGCGGATTTTGGACTTGCCAAGCTCCTCGGAAGGGATTTCAGCAGAGTTTTGACAACCATGAGAGGCACTATAGGGTATCTTGCCCCAGAATGGATAAGCGGCACAGCTATCACCACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTTTTCGAGATCATATCAGGAAACAGAAATGCAGATTGGCATCGGCAAGGTGAGCAAGGTGCAGGGACATTCTTCCCAGTGCTAGTGGCGATGAGACTCCCTGAAGGGAAGATTCAAGACTTGCTAGGTTCAGAACTAAGTGCAGATGCTAACTTAGAAGAGGTGGAGAGGGCTTGCAAGGTGGCTTGCTGGTGCATACAAGATGATGAGAACACAAGACCAACGATGGGAGAGATTGTCCAGATTCTAGAAGGATTGGTCGATGTCAGCTTTCCTCCTGTCCTTTGGTATCTACATGTTCTTGCCCAGCGCTCCAACTTCTCCACCGAGGAAACGTCACATTAG

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CDS seq

ATGGAGGCCTCCTTGGGCGCGTTGATATTTCCGTGTTTTCTTCTGCTGATATGCGCGCGGGCAGACGACACCGTCTCCCGGAATCGGCCGCTCTCCGGCGGCCAAAGGCTTATCTCGTCCGGCGGACTTTTCGCGCTGGGGTTCTTCCAGCCTGTGGTTAACAATTCAGATGATAGAGCGCCTAACAGATGGTACCTTGCTATTTGGTACAACAAGATCTCAAAGACCACACCCGTCTGGATAGCAAATCGGGCGACTCCAATCTCTGATCCAAACTTATCACAGTTGACAGCATCAGAAGATGGCAATTTGGCATTGTTCGACCAGGCCAGGTCTTTGATCTGGGCCACAAATATCACTAATAACGTCAACTCCACAGTTGGAGTTATCCTTGATTCAGGCAACTTAGTGTTAGCTCCTGCCTCCAATACCTCCAATTTCCTATGGCAGAGTTTTGATGAACCGACCAATGTGTGGCTCCCTGGGGCCAAGCTTGGACGGAACAAAATTACTGGCCAAATCACAAGATTTATCTCATGGAAAAGCTCTGTTGATCCATCACCTGGGTATTATACGCTTGAGATTGACCCGAATGGTGGCGACCAGTTCATCCATCTATGGAACAATTCTGCCATCTACTGGGAAACGGGCAAATGGATTGGTAATATGTTTACTGGAATTCCTGAGATGGCATTGTATCCTAAAGAAGTTTTAAGCTACAAATTTACCGTTAACAACCAAGAGAGCTACTTTGTGTACCGAACTAATGCATCCATTGCCACAGCGATGTTTATTATGGAAATTTCAGGCCAGGTAAAAACAGTAGTATGGATGGAGAGCAAAAAAGACTGGGTGCCCTTCTTGGCACTGCCAAAAGCACAGTGCGCCGTGTACTTCCTTTGTGGTTCTTTTGCCATGTGCACTGAGAACGCCGTCACTTTCTGCAGTTGTCTCAGGGGTTTCAGCAAGCAGTACAACGGCGAGTGGCGATATGGTAATCCCAGTGGAGGTTGCATGAGAAACACTAAGCTACAATATGATGGCAATAGCTCTAGCAAGACAACAGCTGATGAATTCTATGCACTAGCTGTTGCTAAGTTGCCTGACAAAGCCTGGGGTTTGGCAACTGGTACAGATGGATTTCTCCAGCTAACGAGGAAGGCAACTGTTATTGGGGCTTCAACTGCTGGAGCTATCCTTGTCACCCTCATTGTGATCATTGGCATACTTCTGATTCTCAGGAAGAGGAATTTGAGTGAAGCGAACAAAGTGGAGGGTTCGTTGGTCGTATTCAGGTATAGGTTCCTACAGCATGTGACAAAAAACTTCTCTGAGAGGTTGGGCAAAGGTTCTTTTGGTCCTGTATTTAAGGGAACGTTACCTGATGGGACACTAATTGCTGTAAAGAAACTTGATGGTGTTTCTCAGGGAGAAAAGCAGTTCCGAGCTGAAGTCAGCACAATTGGCACAATTCAGCATGTGAATTTAATCCGGTTGCTGGGATTTTGCTCAGAGAGGTCCATGAAGATGCTAGTCTATGAGTTCATGCCAAATGGGTCGTTGGATCGTTACCTATTTGGAAGCACTCCATTGACTTTGAGCTGGAAGACAAGATATCAGATTGCTCTTGGAATTGCCAAGGGATTAGCTTACTTGCATGAGAAATGCAGGAGCCTCATCATACACTGTGATATAAAGCCAGAGAATGTACTCCTAGGTGCTGATTTCATGCCAAAGATCGCGGATTTTGGACTTGCCAAGCTCCTCGGAAGGGATTTCAGCAGAGTTTTGACAACCATGAGAGGCACTATAGGGTATCTTGCCCCAGAATGGATAAGCGGCACAGCTATCACCACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTTTTCGAGATCATATCAGGAAACAGAAATGCAGATTGGCATCGGCAAGGTGAGCAAGGTGCAGGGACATTCTTCCCAGTGCTAGTGGCGATGAGACTCCCTGAAGGGAAGATTCAAGACTTGCTAGGTTCAGAACTAAGTGCAGATGCTAACTTAGAAGAGGTGGAGAGGGCTTGCAAGGTGGCTTGCTGGTGCATACAAGATGATGAGAACACAAGACCAACGATGGGAGAGATTGTCCAGATTCTAGAAGGATTGGTCGATGTCAGCTTTCCTCCTGTCCTTTGGTATCTACATGTTCTTGCCCAGCGCTCCAACTTCTCCACCGAGGAAACGTCACATTAG

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Protein seq

MEASLGALIFPCFLLLICARADDTVSRNRPLSGGQRLISSGGLFALGFFQPVVNNSDDRAPNRWYLAIWYNKISKTTPVWIANRATPISDPNLSQLTASEDGNLALFDQARSLIWATNITNNVNSTVGVILDSGNLVLAPASNTSNFLWQSFDEPTNVWLPGAKLGRNKITGQITRFISWKSSVDPSPGYYTLEIDPNGGDQFIHLWNNSAIYWETGKWIGNMFTGIPEMALYPKEVLSYKFTVNNQESYFVYRTNASIATAMFIMEISGQVKTVVWMESKKDWVPFLALPKAQCAVYFLCGSFAMCTENAVTFCSCLRGFSKQYNGEWRYGNPSGGCMRNTKLQYDGNSSSKTTADEFYALAVAKLPDKAWGLATGTDGFLQLTRKATVIGASTAGAILVTLIVIIGILLILRKRNLSEANKVEGSLVVFRYRFLQHVTKNFSERLGKGSFGPVFKGTLPDGTLIAVKKLDGVSQGEKQFRAEVSTIGTIQHVNLIRLLGFCSERSMKMLVYEFMPNGSLDRYLFGSTPLTLSWKTRYQIALGIAKGLAYLHEKCRSLIIHCDIKPENVLLGADFMPKIADFGLAKLLGRDFSRVLTTMRGTIGYLAPEWISGTAITTKADVFSYGMMLFEIISGNRNADWHRQGEQGAGTFFPVLVAMRLPEGKIQDLLGSELSADANLEEVERACKVACWCIQDDENTRPTMGEIVQILEGLVDVSFPPVLWYLHVLAQRSNFSTEETSH

Function G-type lectin S-receptor-like serine/threonine-protein kinase SD2-2 [UniProtKB/Swiss-Prot:Q39203]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os01g45520 LOC_Os01g45520.1 Chr01 25836151 25839983 + MSU_osa1r7
CDS seq

ATGGAGGCCTCCTTGGGCGCGTTGATATTTCCGTGTTTTCTTCTGCTGATATGCGCGCGGGCAGACGACACCGTCTCCCGGAATCGGCCGCTCTCCGGCGGCCAAAGGCTTATCTCGTCCGGCGGACTTTTCGCGCTGGGGTTCTTCCAGCCTGTGGTTAACAATTCAGATGATAGAGCGCCTAACAGATGGTACCTTGCTATTTGGTACAACAAGATCTCAAAGACCACACCCGTCTGGATAGCAAATCGGGCGACTCCAATCTCTGATCCAAACTTATCACAGTTGACAGCATCAGAAGATGGCAATTTGGCATTGTTCGACCAGGCCAGGTCTTTGATCTGGGCCACAAATATCACTAATAACGTCAACTCCACAGTTGGAGTTATCCTTGATTCAGGCAACTTAGTGTTAGCTCCTGCCTCCAATACCTCCAATTTCCTATGGCAGAGTTTTGATGAACCGACCAATGTGTGGCTCCCTGGGGCCAAGCTTGGACGGAACAAAATTACTGGCCAAATCACAAGATTTATCTCATGGAAAAGCTCTGTTGATCCATCACCTGGGTATTATACGCTTGAGATTGACCCGAATGGTGGCGACCAGTTCATCCATCTATGGAACAATTCTGCCATCTACTGGGAAACGGGCAAATGGATTGGTAATATGTTTACTGGAATTCCTGAGATGGCATTGTATCCTAAAGAAGTTTTAAGCTACAAATTTACCGTTAACAACCAAGAGAGCTACTTTGTGTACCGAACTAATGCATCCATTGCCACAGCGATGTTTATTATGGAAATTTCAGGCCAGGTAAAAACAGTAGTATGGATGGAGAGCAAAAAAGACTGGGTGCCCTTCTTGGCACTGCCAAAAGCACAGTGCGCCGTGTACTTCCTTTGTGGTTCTTTTGCCATGTGCACTGAGAACGCCGTCACTTTCTGCAGTTGTCTCAGGGGTTTCAGCAAGCAGTACAACGGCGAGTGGCGATATGGTAATCCCAGTGGAGGTTGCATGAGAAACACTAAGCTACAATATGATGGCAATAGCTCTAGCAAGACAACAGCTGATGAATTCTATGCACTAGCTGTTGCTAAGTTGCCTGACAAAGCCTGGGGTTTGGCAACTGGTACAGATGGATTTCTCCAGCTAACGAGGAAGGCAACTGTTATTGGGGCTTCAACTGCTGGAGCTATCCTTGTCACCCTCATTGTGATCATTGGCATACTTCTGATTCTCAGGAAGAGGAATTTGAGTGAAGCGAACAAAGTGGAGGGTTCGTTGGTCGTATTCAGGTATAGGTTCCTACAGCATGTGACAAAAAACTTCTCTGAGAGGTTGGGCAAAGGTTCTTTTGGTCCTGTATTTAAGGGAACGTTACCTGATGGGACACTAATTGCTGTAAAGAAACTTGATGGTGTTTCTCAGGGAGAAAAGCAGTTCCGAGCTGAAGTCAGCACAATTGGCACAATTCAGCATGTGAATTTAATCCGGTTGCTGGGATTTTGCTCAGAGAGGTCCATGAAGATGCTAGTCTATGAGTTCATGCCAAATGGGTCGTTGGATCGTTACCTATTTGGAAGCACTCCATTGACTTTGAGCTGGAAGACAAGATATCAGATTGCTCTTGGAATTGCCAAGGGATTAGCTTACTTGCATGAGAAATGCAGGAGCCTCATCATACACTGTGATATAAAGCCAGAGAATGTACTCCTAGGTGCTGATTTCATGCCAAAGATCGCGGATTTTGGACTTGCCAAGCTCCTCGGAAGGGATTTCAGCAGAGTTTTGACAACCATGAGAGGCACTATAGGGTATCTTGCCCCAGAATGGATAAGCGGCACAGCTATCACCACAAAGGCAGATGTTTTCAGCTATGGGATGATGCTTTTCGAGATCATATCAGGAAACAGAAATGCAGATTGGCATCGGCAAGGTGAGCAAGGTGCAGGGACATTCTTCCCAGTGCTAGTGGCGATGAGACTCCCTGAAGGGAAGATTCAAGACTTGCTAGGTTCAGAACTAAGTGCAGATGCTAACTTAGAAGAGGTGGAGAGGGCTTGCAAGGTGGCTTGCTGGTGCATACAAGATGATGAGAACACAAGACCAACGATGGGAGAGATTGTCCAGATTCTAGAAGGATTGGTCGATGTCAGCTTTCCTCCTGTCCTTTGGTATCTACATGTTCTTGCCCAGCGCTCCAACTTCTCCACCGAGGAAACGTCACATTAG

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Protein seq

MEASLGALIFPCFLLLICARADDTVSRNRPLSGGQRLISSGGLFALGFFQPVVNNSDDRAPNRWYLAIWYNKISKTTPVWIANRATPISDPNLSQLTASEDGNLALFDQARSLIWATNITNNVNSTVGVILDSGNLVLAPASNTSNFLWQSFDEPTNVWLPGAKLGRNKITGQITRFISWKSSVDPSPGYYTLEIDPNGGDQFIHLWNNSAIYWETGKWIGNMFTGIPEMALYPKEVLSYKFTVNNQESYFVYRTNASIATAMFIMEISGQVKTVVWMESKKDWVPFLALPKAQCAVYFLCGSFAMCTENAVTFCSCLRGFSKQYNGEWRYGNPSGGCMRNTKLQYDGNSSSKTTADEFYALAVAKLPDKAWGLATGTDGFLQLTRKATVIGASTAGAILVTLIVIIGILLILRKRNLSEANKVEGSLVVFRYRFLQHVTKNFSERLGKGSFGPVFKGTLPDGTLIAVKKLDGVSQGEKQFRAEVSTIGTIQHVNLIRLLGFCSERSMKMLVYEFMPNGSLDRYLFGSTPLTLSWKTRYQIALGIAKGLAYLHEKCRSLIIHCDIKPENVLLGADFMPKIADFGLAKLLGRDFSRVLTTMRGTIGYLAPEWISGTAITTKADVFSYGMMLFEIISGNRNADWHRQGEQGAGTFFPVLVAMRLPEGKIQDLLGSELSADANLEEVERACKVACWCIQDDENTRPTMGEIVQILEGLVDVSFPPVLWYLHVLAQRSNFSTEETSH

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.352248 0.000000 0.084022

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_01g0642801 RBH 0.770379 0.000000 1.170033
Nipponbare | IRGSP 1.0 | MSU LOC_Os05g50190 SBH 0.573410 0.665355 0.190348
Nipponbare | IRGSP 1.0 | RAP-db Os01g0642801 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0026960 RBH 0.352319 0.000000 1.453171
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0026460 RBH 0.0 0.000000 0.241739
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_01g0026880 RBH 0.177132 0.0 1.770695
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_01g0026140 RBH 0.000000 0.021038 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_01g0025910 RBH 0.0 1.765458 1.998078
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0434800 RBH 0.567015 2.767213 1.769732
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0025550 RBH 0.020097 0.0 0.129188
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0423900 RBH 0.413796 2.588327 4.4432795
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_01g0025830 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_01g0025750 RBH 0.0 2.597963 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_01g0026080 RBH 3.772445 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_01g0026110 RBH 0.000000 0.000000 0.345423
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_01g0025940 RBH 0.0 0.673792 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_01G026300 RBH 0.000000 0.000000 0.337398
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_01g0026060 RBH 0.577317 1.920816 0.337810
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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