Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g41970 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23801274-23801986 | ||||||||
| Gene Symbol | OsSTA23 | ||||||||||
| DNA seq | ATGGCGCGTCTCCGACTGCCGGGGCGGCTACCTCCTCCTCGTGAACTCCGACGCCGGATTGGTCGCCACCGTCAACCCCATGGCCCCGCGGATGACAGATTTCATCAATATGCCCTTTCGGATCAACGATTCTGCGGCCAACAATGCGGGTGCGGCAGATGCCACCGGCCAAGAAGAAGAATCTTCGCCAATTTCCCTCGACCTACACTTGATTTGCTCGGAAGAGGATCCCATGTCATTCCAGCTGGTCTGGCTGCCACGATGAGTCCAGGGTGCAGGCAACCGTCTTCTCAAATGGCACCAACGGTTGGTGCCATCTCCCGTGGGTAGACATTGAGGCGAGAGCTTCGCCGGTTGCGCCGCACGACGGTAACAAGCATTGGCTTAAGCCCGGGATGCAGGCCAATGGCCTCATTTTCTGGCCTTTCAAGAACAAGGAGCACATGCTGGTGCTGGACACCAACACCATGAAGTTCACAGTCCACGAGATCCCGGTATTCTCCGAGGTCCAACAGGGTTGCAGCTTCGCCGTTGGTGAAACCAAAGATGACGTCCCTTGCATTGTCTGCGTCGTCGGAACCACCGTTAGTGTATGGATGCGCAAATTCGACGAGAAGGGTGTTGAGAGGTGGAGATTTGCTGACAGTATCCTTTCCAGTGAGGAAGCAAACCAACTGGGAATCCATGGTGGGCTGAAGGTGGTGACTCTATAA
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| CDS seq | ATGGCGCGTCTCCGACTGCCGGGGCGGCTACCTCCTCCTCGTGAACTCCGACGCCGGATTGGTCGCCACCGTCAACCCCATGGCCCCGCGGATGACAGATTTCATCAATATGCCCTTTCGGATCAACGATTCTGCGGCCAACAATGCGGCTGGTCTGGCTGCCACGATGAGTCCAGGGTGCAGGCAACCGTCTTCTCAAATGGCACCAACGGTTGGTGCCATCTCCCGTGGGTAGACATTGAGGCGAGAGCTTCGCCGGTTGCGCCGCACGACGGTAACAAGCATTGGCTTAAGCCCGGGATGCAGGCCAATGGCCTCATTTTCTGGCCTTTCAAGAACAAGGAGCACATGCTGGTGCTGGACACCAACACCATGAAGTTCACAGTCCACGAGATCCCGGTATTCTCCGAGGTCCAACAGGGTTGCAGCTTCGCCGTTGGTGAAACCAAAGATGACGTCCCTTGCATTGTCTGCGTCGTCGGAACCACCGTTAGTGTATGGATGCGCAAATTCGACGAGAAGGGTGTTGAGAGGTGGAGATTTGCTGACAGTATCCTTTCCAGTGAGGAAGCAAACCAACTGGGAATCCATGGTGGGCTGAAGGTGGTGACTCTATAA
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| Protein seq | MARLRLPGRLPPPRELRRRIGRHRQPHGPADDRFHQYALSDQRFCGQQCGWSGCHDESRVQATVFSNGTNGWCHLPWVDIEARASPVAPHDGNKHWLKPGMQANGLIFWPFKNKEHMLVLDTNTMKFTVHEIPVFSEVQQGCSFAVGETKDDVPCIVCVVGTTVSVWMRKFDEKGVERWRFADSILSSEEANQLGIHGGLKVVTL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g41970 | LOC_Os01g41970.1 | Chr01 | 23801274 | 23801986 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCGTCTCCGACTGCCGGGGCGGCTACCTCCTCCTCGTGAACTCCGACGCCGGATTGGTCGCCACCGTCAACCCCATGGCCCCGCGGATGACAGATTTCATCAATATGCCCTTTCGGATCAACGATTCTGCGGCCAACAATGCGGCTGGTCTGGCTGCCACGATGAGTCCAGGGTGCAGGCAACCGTCTTCTCAAATGGCACCAACGGTTGGTGCCATCTCCCGTGGGTAGACATTGAGGCGAGAGCTTCGCCGGTTGCGCCGCACGACGGTAACAAGCATTGGCTTAAGCCCGGGATGCAGGCCAATGGCCTCATTTTCTGGCCTTTCAAGAACAAGGAGCACATGCTGGTGCTGGACACCAACACCATGAAGTTCACAGTCCACGAGATCCCGGTATTCTCCGAGGTCCAACAGGGTTGCAGCTTCGCCGTTGGTGAAACCAAAGATGACGTCCCTTGCATTGTCTGCGTCGTCGGAACCACCGTTAGTGTATGGATGCGCAAATTCGACGAGAAGGGTGTTGAGAGGTGGAGATTTGCTGACAGTATCCTTTCCAGTGAGGAAGCAAACCAACTGGGAATCCATGGTGGGCTGAAGGTGGTGACTCTATAA
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| Protein seq | MARLRLPGRLPPPRELRRRIGRHRQPHGPADDRFHQYALSDQRFCGQQCGWSGCHDESRVQATVFSNGTNGWCHLPWVDIEARASPVAPHDGNKHWLKPGMQANGLIFWPFKNKEHMLVLDTNTMKFTVHEIPVFSEVQQGCSFAVGETKDDVPCIVCVVGTTVSVWMRKFDEKGVERWRFADSILSSEEANQLGIHGGLKVVTL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41950 | RBH | 0.0 | 0.0 | 0.234056 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024452 | RBH | 0.063073 | 1.759760 | 0.419726 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024060 | RBH | 0.0 | 0.0 | 0.847229 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023460 | RBH | 0.0 | 0.0 | 1.375619 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0398800 | RBH | 0.202417 | 0.1956425 | 0.1436605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0387600 | RBH | 0.117651 | 0.0796605 | 1.5031075 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023400 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023380 | RBH | 0.118309 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023630 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023650 | RBH | 0.0 | 0.000000 | 0.090404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023530 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023760 | RBH | 0.0 | 0.0 | 0.425471 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023490 | RBH | 0.0 | 0.0 | 0.099549 |
