Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g41950 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23782487-23785775 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TAAATATATAGGCAGTCCCGGTCCGTTCGTGTTCCACGCACTGTGGGCACTGTGAATGTGTGACTAAATGGGCCGAGCCCAACTACTATAGCTAAGTCGCGCTGTCCATCTCACCATCTCCCGGAAGGCAAAAAGTACACCGAAGGTCCCTCAACTTGTCACCGAGTTACAAAATCGTCCCCCAACCATAAAACCGATACAACACATCCCCTAACTTGTTTTGACCCGGTTTTGTCTCACGTGACGGCTGAGTCAGCGTGAGACCCACGTGGACCCCACATGGCAGGGTGTCCCTGTCAGCTCCTGCTCTCTTTCCTCTCTTCTCTTTTTTTTTTTTCTCTTCTCCTTTCCTCCCTCTCGCTCTCTGCTCTCGCACAGGCGACGGCGCGCGCGGCCGGCGACGGCGGCTCCCGGGTGGCGGCGCGCGGGTTCAGGGCGGCGCGCGGCTACGGCCATCATCACATCTCGACGACGCCGCCATCAGTCGCTGCCATCGGCGATGGCGGCACGCTGCAGTGGGCCATCCAAAACTTCATCCGCGCCAGTGACTACATCACGCTGTTGCACGTCTGCCCGCCAGCGAGGTTGCGCAGCCTACGCCTCGGCGGCTTCCAGCTCGCCCTCGCCTTCAGGGAGCTCTGCAACGGCATCGCGGAGGTAAACCCATCAATCAATGGTGGTAGTTGGCTCAACTCAAAACAAAGAAAGAAGCAAATCATCTTTTTAATTGTGAAATGGTATGCAGGCGAAGGTGGAGATAGTGGTTAGGGAGGGGAAGGTCGGGGAGACGGTGGTGGTGACGGTGAACCAGCTCGCCGCCACCACGCTCGTCGTCGGTCTCCACGACAAGATTCCTCAACTGAACTGAACTATACTGTACCGAAGCTGGTCCTCCACCACGCCGTCGTCTGGCCTCCGCATTCTGCAGGCCAACAACCCCGGCCTCGTGCACCGGCATGGAGGGCCCTAGGGGCGGCGAGATCGACGATGGCCGCTGCCCACGACGAGGTCCCCTTGGAGGCGGTGGTGGTCGATTCCATTTTTTCCCACATCCAGGCAGGTGGCGCGGCGGAGGTGGCGGCGGGATCCGCCGGGAGGTCGCGGAGGTGGGACGCCGCGGACGAATGGAGCGGCGGCGCGGCGGGCGACCAGGACGATGGCCACTGCGCCACGGCGGGATCCAGCGGGGACGAGGGGGACGACGACACCGACGAGGAAGAGAGGATCCCGTCGGGAGGAGCGGGCGCTCGCGCCCAACTCCTCGCCCACTGTCGTTGCCTCCCATCTCTTCCCCCGGCGGCAGCCGCCCGCGCCCAGCTATTCCCCCTTTGGCCACCGCCCGTGCCCAGCTCCTCGGTCGTTGTCGCCGACGCCCATCTCTTCCCCCGCCGCCCATGCGCGCGCGGCTGTGCTCAATTGACCAAGCCTTCCTCCCTCGGCGGCCGCCGACACGCCCGCCTCACCGGCCATCCCCCGCCAGCCGCCGGTGCGCGGCACTCCTCCCCTGTCGCTGTGAGTGAGAGAGAGAGAGAGGAGGATGAAGAGAGAGAGAGAGGAGGGGAAAGAGATAGAGGGCGCTGACGTGGCATCCTGACACGTGGGGCTCACGTGGGTCCCATGCTGACTCAGCCATCACATCGGATAAATGAGTGAACGGTTTTGTAAGTTGATAGATGTTATATATCTGATTTTGTGGTTGGGGGATGATTTTGTAATTCGATGACAGGTTGAGGGACCTTGGGTGTACTTTTTCCTCTCCCGGAATCAACTCGCCGCCCATTTCCTCGATTTACCGCCTTGTCTCATACTCTCATCTCATGGGGCAGGTAGGGTTTACTGCCCGGCGATCATCTCCGCCGCCGCCTCCGTCGCCGTCGCCGGCGACCGAGGCGAGGGCCTGCGGTAGCGACCCAACCCAGCCGCCGCCGCCGGCGAAACGCCGGAGGACAACACGCCGCGTCGTCGGCATCGACTCCCTCGGCGAGGACCTCCTCCTGGACATCCTCCTCCGCCTCCCCACCCTCGCCTCGCTCGTCCGCGCCGCGCTCACCTGCAGGGCGTAGCGCGCCGCGGTGGCCTCCTCCCCGTCCTTCCGCCGCCGCTTCAGGGACCTCCACCCGCCGCCCTTCCTCGGCGCCTTCGGCGACCCCGACGGCCACGACGGCCTCCCGGTCTTCCTCCCCGCGCGGCGCACCCGCGACCGGGACCGCGGCGGCGACTTCCTCCTCACCTGCCTCCAGGACCCCGACCACGACGCGCCCCTCCGCTGGCGCGTCGCCGACTGCCGGGACGGCTACCTCCTCCTCTTCAACTCCGACGCAGGATTGGTCGCCACCGTCAACCCCATGGCCCCGCGGATGACGGATCTCATCAAAACGCCCTTCCGGATCAACAATTCGGCCAGCAATGGCGCCATCCAAGACGAATCCTTGCCAATCTCCCTCGACGTGCACCTGATTTCCTCGGAAGAGGATCCCATGTCATTCCAACTGGTCTGGCTTTGCCACGACGAGTTCAGGGTTCAGGTGTCCGTCTTCTCGAACGACACAAGGGATTGGTGCTTTCTCCCATGGGTGGACATCGAGGAGAGGGTTTCTTCGCCGGATGTGCCACAAGATGGCACCAAATACTGGCTTATGTCCGGGATGCAAGCCAATGGCCTCATATTCTGGCCCTTCCAGAATGGGAAGCACATGCTGGTGCTGGACACTGGCACCATGGAGTTCTCCGTGTATGAGTTCCCAATATACTCTAAGCTCGTGCAAGGTTGTAGCTTCGGTGTCGGCGAGACCAAAGACGGCATCCCTTGCATTGCTTATGTCAATGGAGCCACCATTGTTGTGTTGATCCGCAGATTCGACAAGAAGCAGGGTGTTCAGGGGTGGAGGTTTGTCGACGGCGTCAATTGCGACGACGAGGCGGACCAACTGGGTATTAATGGTGGGCTTGATGTGGTGGCCATAAAGGATGGCTTTGTGTACCTGGCCGCGACAGGGATGATCCTTTCGCTCTGCTTAGAAACAAGGAAGCTTGAGAAGCTGTTTCCAATGAGTTTCCAGTTCCCTCTCCATCCCTACATCATGGCGTGGCCTCCTACTTTGGTAGGAAACTATGGGAGCTTTGCAGAGATCCAAGATGATATTAGCAATGTTTAACTGCTAGCTAGGTTAAGGTGGCAAATTTAATCTTTATTAATTGTTGCGGGAACATTGTTTTATTCAATTCTCTAATCAGGGGATCAACATTTTGGTGATATTATGCAAAAAAGAAAAAAATCTTTCAACTTCAA
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| CDS seq | ATGGCCCCGCGGATGACGGATCTCATCAAAACGCCCTTCCGGATCAACAATTCGGCCAGCAATGGCGCCATCCAAGACGAATCCTTGCCAATCTCCCTCGACGTGCACCTGATTTCCTCGGAAGAGGATCCCATGTCATTCCAACTGGTCTGGCTTTGCCACGACGAGTTCAGGGTTCAGGTGTCCGTCTTCTCGAACGACACAAGGGATTGGTGCTTTCTCCCATGGGTGGACATCGAGGAGAGGGTTTCTTCGCCGGATGTGCCACAAGATGGCACCAAATACTGGCTTATGTCCGGGATGCAAGCCAATGGCCTCATATTCTGGCCCTTCCAGAATGGGAAGCACATGCTGGTGCTGGACACTGGCACCATGGAGTTCTCCGTGTATGAGTTCCCAATATACTCTAAGCTCGTGCAAGGTTGTAGCTTCGGTGTCGGCGAGACCAAAGACGGCATCCCTTGCATTGCTTATGTCAATGGAGCCACCATTGTTGTGTTGATCCGCAGATTCGACAAGAAGCAGGGTGTTCAGGGGTGGAGGTTTGTCGACGGCGTCAATTGCGACGACGAGGCGGACCAACTGGGTATTAATGGTGGGCTTGATGTGGTGGCCATAAAGGATGGCTTTGTGTACCTGGCCGCGACAGGGATGATCCTTTCGCTCTGCTTAGAAACAAGGAAGCTTGAGAAGCTGTTTCCAATGAGTTTCCAGTTCCCTCTCCATCCCTACATCATGGCGTGGCCTCCTACTTTGGTAGGAAACTATGGGAGCTTTGCAGAGATCCAAGATGATATTAGCAATGTTTAA
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| Protein seq | MAPRMTDLIKTPFRINNSASNGAIQDESLPISLDVHLISSEEDPMSFQLVWLCHDEFRVQVSVFSNDTRDWCFLPWVDIEERVSSPDVPQDGTKYWLMSGMQANGLIFWPFQNGKHMLVLDTGTMEFSVYEFPIYSKLVQGCSFGVGETKDGIPCIAYVNGATIVVLIRRFDKKQGVQGWRFVDGVNCDDEADQLGINGGLDVVAIKDGFVYLAATGMILSLCLETRKLEKLFPMSFQFPLHPYIMAWPPTLVGNYGSFAEIQDDISNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g41950 | LOC_Os01g41950.1 | Chr01 | 23782487 | 23785775 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCCCGCGGATGACGGATCTCATCAAAACGCCCTTCCGGATCAACAATTCGGCCAGCAATGGCGCCATCCAAGACGAATCCTTGCCAATCTCCCTCGACGTGCACCTGATTTCCTCGGAAGAGGATCCCATGTCATTCCAACTGGTCTGGCTTTGCCACGACGAGTTCAGGGTTCAGGTGTCCGTCTTCTCGAACGACACAAGGGATTGGTGCTTTCTCCCATGGGTGGACATCGAGGAGAGGGTTTCTTCGCCGGATGTGCCACAAGATGGCACCAAATACTGGCTTATGTCCGGGATGCAAGCCAATGGCCTCATATTCTGGCCCTTCCAGAATGGGAAGCACATGCTGGTGCTGGACACTGGCACCATGGAGTTCTCCGTGTATGAGTTCCCAATATACTCTAAGCTCGTGCAAGGTTGTAGCTTCGGTGTCGGCGAGACCAAAGACGGCATCCCTTGCATTGCTTATGTCAATGGAGCCACCATTGTTGTGTTGATCCGCAGATTCGACAAGAAGCAGGGTGTTCAGGGGTGGAGGTTTGTCGACGGCGTCAATTGCGACGACGAGGCGGACCAACTGGGTATTAATGGTGGGCTTGATGTGGTGGCCATAAAGGATGGCTTTGTGTACCTGGCCGCGACAGGGATGATCCTTTCGCTCTGCTTAGAAACAAGGAAGCTTGAGAAGCTGTTTCCAATGAGTTTCCAGTTCCCTCTCCATCCCTACATCATGGCGTGGCCTCCTACTTTGGTAGGAAACTATGGGAGCTTTGCAGAGATCCAAGATGATATTAGCAATGTTTAA
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| Protein seq | MAPRMTDLIKTPFRINNSASNGAIQDESLPISLDVHLISSEEDPMSFQLVWLCHDEFRVQVSVFSNDTRDWCFLPWVDIEERVSSPDVPQDGTKYWLMSGMQANGLIFWPFQNGKHMLVLDTGTMEFSVYEFPIYSKLVQGCSFGVGETKDGIPCIAYVNGATIVVLIRRFDKKQGVQGWRFVDGVNCDDEADQLGINGGLDVVAIKDGFVYLAATGMILSLCLETRKLEKLFPMSFQFPLHPYIMAWPPTLVGNYGSFAEIQDDISNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.234056 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41970 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024452 | SBH | 0.063073 | 1.759760 | 0.419726 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024020 | SBH | 0.130820 | 0.000000 | 0.097566 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024370 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023760 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023450 | RBH | 0.0 | 0.0 | 0.772678 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0398800 | SBH | 0.202417 | 0.1956425 | 0.1436605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0387000 | RBH | 0.5505975 | 1.5200695 | 3.3412095 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023390 | RBH | 0.019289 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023380 | SBH | 0.118309 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023650 | SBH | 0.0 | 0.000000 | 0.090404 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023530 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023740 | RBH | 0.095493 | 0.610451 | 1.216912 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0023470 | RBH | 0.387958 | 5.262270 | 2.240492 |
