Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g40890 | OGI:01071800 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23125531-23127535 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCGAACAAACAAATACTCCAAGTTTACCATGGACCAGGAAACGTCCGTTATGGGCCAACTGGGGTAGATCTGTCAGATTTTATTGTATCAGAAAGGGGAATTGATAGACCGGCTGAGAGGAGTGTACCTTCTATAAAAGGATGGTTAATGAGGGGCTTGAGAGTTGATCCACAGACAAGTGACATAACAATCAATGTTATAGTAAGTCGGGCAACTGAGGGTTTTTATTGGGAACTAATGCCAGTTCAAAACTCTCGAGTGTGGATATGGTATTTGGAAAATGCATTGCAACGCGAGTGGCCTCTAGCTTTGGTTCCGTTTGTTCACCCGAAGGATCCAGGTGTGCAGATGAACATGGATGATGGCGAGGGACCAAGTGCTGAAGTAAATGAGACTTCTGTAGAGGAGGTCAACGCACGAGAGGACGGGGGCGTAGTAGCTCCAGTGGGCATTCAACCAAGTGGAGTGGCCGACGAGGGGGAGACTGTCGGTGCCATTGTGGATGAAATGGAGAGGGAGGATTCTGACAACGAGCGTGTAGAGGAAGGTGATTCGTCAGATGATGAGACGGATATTAATCCAGCAGAATGGGCTAGTGAGGATTTTTCTGGGCTGATCGTCTCTGAAGAGGATAGTGTGAGATGGGAGTACAAAGAAAATGAGGTTATTCAGGGAGCGATTTATAGTAGAGCAGAAGATATGAAGGAGGCGGTAAAACATTTTGCAGTGTCACTTCATAGAGAGTTTTGGGTTGCCAAGTCGAACCGGTCGCAATATGAAGTTCGGTGTGTTAAGGAAAAAGATGGTTATCCCTGGAGAGTGCACGCGTATAAGGGGAAATGGAAGGATTATTGGACAGTGTCAGTCGTTACCAAGCATACATGTTTTCTACCTGGTGTTCAGAAATACCACAGGAACATTACATGTGCATTTGTTGCATCTGAGATGTATGCGCATGTAATCGATAATCTCACATATGAACCAAGGTCAATAATCCAACACATCGAAGAGACATACAAGTATACTATTAGCTATGCCAAGTATTGGAACTTATGAAGCCTCGTATGACAATTTGCCACGCCTGCTTGGTGTTATCGAGGAAAGAAACCCTGGGAGCTCTTACGAAGTGAAGAAATTCCCCTCAATTGAACATCCTGGCAAGAGTGTGCTGCAAAGGGCGTTCTTAGCTCTACATGCATGCAAGATGACATTCGTGAACTGTCGTCCTGTTCTCTGCATTGATGGGACATTCTTGACAGGAAAGTATCGGGGCCAGATACTAACAGCAATAGGGGTAGATGGGAACAATCAGGTATTGCCCTTGGCATTTGCTTTTGTTGAGAGTGAGAATACCGACAGCTGGTACTGGTTCCTGAAATTGGTTAAAACAAAAGTTGTTGGTATGAGGCCAAATGTGTGCCTGATACATGATAGGCACGCTGGCATTCTGCGAGCGATAGAAGAGTTGCAGTTTGGGAGTATGGAACGAGGATACCCCAGTGTTTGGGAAGATGTACAGAGTAGGTGGTGCATGCGTCATATGGGAGCTAATTTCTTCAAGCAATTCAAGAACAAGGAGCTCATGAACATGTTCAAGAGGCTGTGCAATCAGAACCAGGAGAAAAAATTCAATGAGCTTTGGAAGAGATTAGATGAGTTGATAGCCAAATGCAGTGATCAGCGTGCAGCGGCTCCATCGACCGCCGTTGCTGACCCTCCTCAAGCTCTTGGACCTCTCCCAACGGATAGTCCAACATTGGTTAGAAGAACTGGATTGGAGATTGGGAAATTTTCTCAGTGGATTCTGCATGAACCAAAAGAGAAATGGGCCAAGGCGTATGACACAGGTGGTGCTAAATATGGAATAATGACAACAAATTTGGCAGAAGTTTACAACTGGGTGATGCGCGGTGTCCGTGGACTGCCACTAGTTGGCATAATGGAGTTCATTTTACATGGGACATTGTCGCGACCGAGAAAATTGCCTTTTCCCGAACGCTAG
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| CDS seq | ATGTCGAACAAACAAATACTCCAAGTTTACCATGGACCAGGAAACGTCCGTTATGGGCCAACTGGGGTAGATCTGTCAGATTTTATTGTATCAGAAAGGGGAATTGATAGACCGGCTGAGAGGAGTGTACCTTCTATAAAAGGATGGTTAATGAGGGGCTTGAGAGTTGATCCACAGACAAGTGACATAACAATCAATGTTATAGTAAGTCGGGCAACTGAGGGTTTTTATTGGGAACTAATGCCAGTTCAAAACTCTCGAGTGTGGATATGGTATTTGGAAAATGCATTGCAACGCGAGTGGCCTCTAGCTTTGGTTCCGTTTGTTCACCCGAAGGATCCAGGTGTGCAGATGAACATGGATGATGGCGAGGGACCAAGTGCTGAAGTAAATGAGACTTCTGTAGAGGAGGTCAACGCACGAGAGGACGGGGGCGTAGTAGCTCCAGTGGGCATTCAACCAAGTGGAGTGGCCGACGAGGGGGAGACTGTCGGTGCCATTGTGGATGAAATGGAGAGGGAGGATTCTGACAACGAGCGTGTAGAGGAAGGTGATTCGTCAGATGATGAGACGGATATTAATCCAGCAGAATGGGCTAGTGAGGATTTTTCTGGGCTGATCGTCTCTGAAGAGGATAGTGTGAGATGGGAGTACAAAGAAAATGAGGTTATTCAGGGAGCGATTTATAGTAGAGCAGAAGATATGAAGGAGGCGGTAAAACATTTTGCAGTGTCACTTCATAGAGAGTTTTGGGTTGCCAAGTCGAACCGGTCGCAATATGAAGTTCGGTGTGTTAAGGAAAAAGATGGTTATCCCTGGAGAGTGCACGCGTATAAGGGGAAATGGAAGGATTATTGGACAGTGTCAGTCGTTACCAAGCATACATGTTTTCTACCTGGTGTTCAGAAATACCACAGGAACATTACATGTGCATTTGTTGCATCTGAGATGTATGCGCATGTAATCGATAATCTCACATATGAACCAAGTATTGGAACTTATGAAGCCTCGTATGACAATTTGCCACGCCTGCTTGGTGTTATCGAGGAAAGAAACCCTGGGAGCTCTTACGAAGTGAAGAAATTCCCCTCAATTGAACATCCTGGCAAGAGTGTGCTGCAAAGGGCGTTCTTAGCTCTACATGCATGCAAGATGACATTCGTGAACTGTCGTCCTGTTCTCTGCATTGATGGGACATTCTTGACAGGAAAGTATCGGGGCCAGATACTAACAGCAATAGGGGTAGATGGGAACAATCAGGTATTGCCCTTGGCATTTGCTTTTGTTGAGAGTGAGAATACCGACAGCTGGTACTGGTTCCTGAAATTGGTTAAAACAAAAGTTGTTGGTATGAGGCCAAATGTGTGCCTGATACATGATAGGCACGCTGGCATTCTGCGAGCGATAGAAGAGTTGCAGTTTGGGAGTATGGAACGAGGATACCCCAGTGTTTGGGAAGATGTACAGAGTAGGTGGTGCATGCGTCATATGGGAGCTAATTTCTTCAAGCAATTCAAGAACAAGGAGCTCATGAACATGTTCAAGAGGCTGTGCAATCAGAACCAGGAGAAAAAATTCAATGAGCTTTGGAAGAGATTAGATGAGTTGATAGCCAAATGCAGTGATCAGCGTGCAGCGGCTCCATCGACCGCCGTTGCTGACCCTCCTCAAGCTCTTGGACCTCTCCCAACGGATAGTCCAACATTGGTTAGAAGAACTGGATTGGAGATTGGGAAATTTTCTCAGTGGATTCTGCATGAACCAAAAGAGAAATGGGCCAAGGCGTATGACACAGGTGGTGCTAAATATGGAATAATGACAACAAATTTGGCAGAAGTTTACAACTGGGTGATGCGCGGTGTCCGTGGACTGCCACTAGTTGGCATAATGGAGTTCATTTTACATGGGACATTGTCGCGACCGAGAAAATTGCCTTTTCCCGAACGCTAG
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| Protein seq | MSNKQILQVYHGPGNVRYGPTGVDLSDFIVSERGIDRPAERSVPSIKGWLMRGLRVDPQTSDITINVIVSRATEGFYWELMPVQNSRVWIWYLENALQREWPLALVPFVHPKDPGVQMNMDDGEGPSAEVNETSVEEVNAREDGGVVAPVGIQPSGVADEGETVGAIVDEMEREDSDNERVEEGDSSDDETDINPAEWASEDFSGLIVSEEDSVRWEYKENEVIQGAIYSRAEDMKEAVKHFAVSLHREFWVAKSNRSQYEVRCVKEKDGYPWRVHAYKGKWKDYWTVSVVTKHTCFLPGVQKYHRNITCAFVASEMYAHVIDNLTYEPSIGTYEASYDNLPRLLGVIEERNPGSSYEVKKFPSIEHPGKSVLQRAFLALHACKMTFVNCRPVLCIDGTFLTGKYRGQILTAIGVDGNNQVLPLAFAFVESENTDSWYWFLKLVKTKVVGMRPNVCLIHDRHAGILRAIEELQFGSMERGYPSVWEDVQSRWCMRHMGANFFKQFKNKELMNMFKRLCNQNQEKKFNELWKRLDELIAKCSDQRAAAPSTAVADPPQALGPLPTDSPTLVRRTGLEIGKFSQWILHEPKEKWAKAYDTGGAKYGIMTTNLAEVYNWVMRGVRGLPLVGIMEFILHGTLSRPRKLPFPER |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40890 | LOC_Os01g40890.1 | Chr01 | 23125531 | 23127535 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCGAACAAACAAATACTCCAAGTTTACCATGGACCAGGAAACGTCCGTTATGGGCCAACTGGGGTAGATCTGTCAGATTTTATTGTATCAGAAAGGGGAATTGATAGACCGGCTGAGAGGAGTGTACCTTCTATAAAAGGATGGTTAATGAGGGGCTTGAGAGTTGATCCACAGACAAGTGACATAACAATCAATGTTATAGTAAGTCGGGCAACTGAGGGTTTTTATTGGGAACTAATGCCAGTTCAAAACTCTCGAGTGTGGATATGGTATTTGGAAAATGCATTGCAACGCGAGTGGCCTCTAGCTTTGGTTCCGTTTGTTCACCCGAAGGATCCAGGTGTGCAGATGAACATGGATGATGGCGAGGGACCAAGTGCTGAAGTAAATGAGACTTCTGTAGAGGAGGTCAACGCACGAGAGGACGGGGGCGTAGTAGCTCCAGTGGGCATTCAACCAAGTGGAGTGGCCGACGAGGGGGAGACTGTCGGTGCCATTGTGGATGAAATGGAGAGGGAGGATTCTGACAACGAGCGTGTAGAGGAAGGTGATTCGTCAGATGATGAGACGGATATTAATCCAGCAGAATGGGCTAGTGAGGATTTTTCTGGGCTGATCGTCTCTGAAGAGGATAGTGTGAGATGGGAGTACAAAGAAAATGAGGTTATTCAGGGAGCGATTTATAGTAGAGCAGAAGATATGAAGGAGGCGGTAAAACATTTTGCAGTGTCACTTCATAGAGAGTTTTGGGTTGCCAAGTCGAACCGGTCGCAATATGAAGTTCGGTGTGTTAAGGAAAAAGATGGTTATCCCTGGAGAGTGCACGCGTATAAGGGGAAATGGAAGGATTATTGGACAGTGTCAGTCGTTACCAAGCATACATGTTTTCTACCTGGTGTTCAGAAATACCACAGGAACATTACATGTGCATTTGTTGCATCTGAGATGTATGCGCATGTAATCGATAATCTCACATATGAACCAAGTATTGGAACTTATGAAGCCTCGTATGACAATTTGCCACGCCTGCTTGGTGTTATCGAGGAAAGAAACCCTGGGAGCTCTTACGAAGTGAAGAAATTCCCCTCAATTGAACATCCTGGCAAGAGTGTGCTGCAAAGGGCGTTCTTAGCTCTACATGCATGCAAGATGACATTCGTGAACTGTCGTCCTGTTCTCTGCATTGATGGGACATTCTTGACAGGAAAGTATCGGGGCCAGATACTAACAGCAATAGGGGTAGATGGGAACAATCAGGTATTGCCCTTGGCATTTGCTTTTGTTGAGAGTGAGAATACCGACAGCTGGTACTGGTTCCTGAAATTGGTTAAAACAAAAGTTGTTGGTATGAGGCCAAATGTGTGCCTGATACATGATAGGCACGCTGGCATTCTGCGAGCGATAGAAGAGTTGCAGTTTGGGAGTATGGAACGAGGATACCCCAGTGTTTGGGAAGATGTACAGAGTAGGTGGTGCATGCGTCATATGGGAGCTAATTTCTTCAAGCAATTCAAGAACAAGGAGCTCATGAACATGTTCAAGAGGCTGTGCAATCAGAACCAGGAGAAAAAATTCAATGAGCTTTGGAAGAGATTAGATGAGTTGATAGCCAAATGCAGTGATCAGCGTGCAGCGGCTCCATCGACCGCCGTTGCTGACCCTCCTCAAGCTCTTGGACCTCTCCCAACGGATAGTCCAACATTGGTTAGAAGAACTGGATTGGAGATTGGGAAATTTTCTCAGTGGATTCTGCATGAACCAAAAGAGAAATGGGCCAAGGCGTATGACACAGGTGGTGCTAAATATGGAATAATGACAACAAATTTGGCAGAAGTTTACAACTGGGTGATGCGCGGTGTCCGTGGACTGCCACTAGTTGGCATAATGGAGTTCATTTTACATGGGACATTGTCGCGACCGAGAAAATTGCCTTTTCCCGAACGCTAG
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| Protein seq | MSNKQILQVYHGPGNVRYGPTGVDLSDFIVSERGIDRPAERSVPSIKGWLMRGLRVDPQTSDITINVIVSRATEGFYWELMPVQNSRVWIWYLENALQREWPLALVPFVHPKDPGVQMNMDDGEGPSAEVNETSVEEVNAREDGGVVAPVGIQPSGVADEGETVGAIVDEMEREDSDNERVEEGDSSDDETDINPAEWASEDFSGLIVSEEDSVRWEYKENEVIQGAIYSRAEDMKEAVKHFAVSLHREFWVAKSNRSQYEVRCVKEKDGYPWRVHAYKGKWKDYWTVSVVTKHTCFLPGVQKYHRNITCAFVASEMYAHVIDNLTYEPSIGTYEASYDNLPRLLGVIEERNPGSSYEVKKFPSIEHPGKSVLQRAFLALHACKMTFVNCRPVLCIDGTFLTGKYRGQILTAIGVDGNNQVLPLAFAFVESENTDSWYWFLKLVKTKVVGMRPNVCLIHDRHAGILRAIEELQFGSMERGYPSVWEDVQSRWCMRHMGANFFKQFKNKELMNMFKRLCNQNQEKKFNELWKRLDELIAKCSDQRAAAPSTAVADPPQALGPLPTDSPTLVRRTGLEIGKFSQWILHEPKEKWAKAYDTGGAKYGIMTTNLAEVYNWVMRGVRGLPLVGIMEFILHGTLSRPRKLPFPER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0595300 | SBH | 0.916307 | 0.456079 | 1.496882 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19860 | RBH | 0.082928 | 0.039034 | 0.070140 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0595300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023470 | SBH | 0.115423 | 0.000000 | 0.938548 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023790 | SBH | 0.267439 | 0.0 | 0.483934 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023200 | SBH | 0.000000 | 0.064466 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022900 | SBH | 0.000000 | 13.148704 | 3.219382 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0431300 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022830 | SBH | 0.089217 | 0.090601 | 0.469352 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0705200 | SBH | 0.045426 | 0.151458 | 0.057569 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022860 | SBH | 0.000000 | 0.056177 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022810 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023060 | SBH | 0.529715 | 0.227037 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023190 | SBH | 0.0 | 1.635728 | 1.304630 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022850 | SBH | 0.633314 | 7.158085 | 3.657980 |
