Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g38120 | OGI:01067140 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:21348036-21349674 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTATTTGGCGGGAAACACGGTGAAGTAAGTCTGCGTGGCGGCGAGGAAGACGACGATCGCCGCGACTACGACGGAGATGGCCGACCACGGGCTGCCGAAGTAGTCACGCCGGAGCGCCGCCCTGTTGCGGTGCCACCACGAGCCACAGTACCCGCGCACGTCCTCGTACAGCCCGGCGAAAGCCTGGCGGCTGAAGTCCATGGCGGCGCCCTCGCCGAGGCGGCTGAAGAACCGGGCCGCCTCCTCGTCGTCGGCCAGCAGGCTCTCCAGGACGCCGCGCCGGCGGAGCAGCTCGACGTCGCGCGCCGTCACGATGAGCTGGCCCATCAGCGCCACGTAGCTGGTGAGGAGGCGCGGCTCCTCGCCCGCCTGCGTCTGCTCGAACGCCATGAGGTTGACGAGGAGCGGTCGCTTCATGTCGTCGATCTCTCTATGGCCGGGATCTCCATGACGCCCCTGCGGCGGTCGAACGTCACGTCGAACCTGTCCCGCGCCGCGCTCCGCCGCACGAGGGTGACACCCGCCTCCCGCAGTTCGCTGGCACGCAGAATCGTCCGCGTCGGCGCCGCCGGTGCCTTCCGGGCCGACTCGGGCAGCCGCGGCCGTGGCCGCTTGGGAACGAAGCACTCGTAGTACAGGTGGAGGAGGTGGTGGACGTCCCAGTCACCGGACGGCCGCCTGATGGGCTCCTCGTCGCTGATGTACTCGATGAGGAGGTTGAAGAGGGACTCCTTGTCGGGCTGCATGCCGGCGACGGCTTCGTAGAGCCTCTCGAGGACGAAGAACGGGATCTGGTTCTCCATCAAGAGCAGGTCGGCGGCGACGAGCGTGAGGCCCCAGCCGACGTCGCAGAGCGAGTCGGCCTCCTTGGTGTGCCACTTGAAGAAGAACTCGAGGATGAAGAAGCCGTCGAGGAGGAGCATCCGGACGAAGTCGTCGGAGGAGTCCATGCCCACGGGGCGCTCGCTGTAGCACGCGCGCGCCCGGGGCTCGAGGGTCCGCATTTCCGCGACCAAGGCGGACGCGGTGACCACGGCAGCGGCGCCGTCGCCAGCGCGGCGGGATAGCAGGTCGTGGAGGTAGCGCCACTTGTGGTCCTCCATGGCGCGGAGCGCGGCGCCGCCGTGGTGGTAGGGGCCGATGGATACCAGGCGCGGCTCGTACGCGGTGCGGTTGCCGTCGCGGACGTAGGCGGGGACGCGGAAGATGGTGAACGGCTGCAGCCGCGCCCGCCATTGATCTCCGCTGATGGCGTCCAACGTTGCCTCCACCGAAGCTTCCAACGACGCCACCGCCACGGGTTGGCAAATCTAGCGAAATAGTGGTGGCACGAATTAAAGAAAGCGCGCAGACGTGCAGGGAGTCGAAGTCGCAAAAAATAGTTTCCCCAGACGTGCGTGGCAAAATAGTTTCCCCAGATCGACGTGCATCTGCAAACTTGCAAAAACCGAAATGCATGTGGTCATCGAAGTCGCGTCATCGTCGTTTGACATATATGGTTGTTTTCATACGTTATGTGGTCGATCGAGCAGAAAAGCACGACCACCAACGCGTTGATGTTTGGGTGGATATCATTATCATATCATTCACTTGCCCGCAATTTCATCGCAAGTTTCGTGCAACAAAACAGCGTTACCAT
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| CDS seq | ATGATTTGCCAACCCGTGGCGGTGGCGTCGTTGGAAGCTTCGGTGGAGGCAACGTTGGACGCCATCAGCGGAGATCAATGGCGGGCGCGGCTGCAGCCGTTCACCATCTTCCGCGTCCCCGCCTACGTCCGCGACGGCAACCGCACCGCGTACGAGCCGCGCCTGGTATCCATCGGCCCCTACCACCACGGCGGCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTATCCCGCCGCGCTGGCGACGGCGCCGCTGCCGTGGTCACCGCGTCCGCCTTGGTCGCGGAAATGCGGACCCTCGAGCCCCGGGCGCGCGCGTGCTACAGCGAGCGCCCCGTGGGCATGGACTCCTCCGACGACTTCGTCCGGATGCTCCTCCTCGACGGCTTCTTCATCCTCGAGTTCTTCTTCAAGTGGCACACCAAGGAGGCCGACTCGCTCTGCGACGTCGGCTGGGGCCTCACGCTCGTCGCCGCCGACCTGCTCTTGATGGAGAACCAGATCCCGTTCTTCGTCCTCGAGAGGCTCTACGAAGCCGTCGCCGGCATGCAGCCCGACAAGGAGTCCCTCTTCAACCTCCTCATCGAGTACATCAGCGACGAGGAGCCCATCAGGCGGCCGTCCGGTGACTGGGACGTCCACCACCTCCTCCACCTGTACTACGAGTGCTTCGTTCCCAAGCGGCCACGGCCGCGGCTGCCCGAGTCGGCCCGGAAGGCACCGGCGGCGCCGACGCGGACGATTCTGCGTGCCAGCGAACTGCGGGAGGCGGGTGTCACCCTCGTGCGGCGGAGCGCGGCGCGGGACAGAGAGATCGACGACATGAAGCGACCGCTCCTCGTCAACCTCATGGCGTTCGAGCAGACGCAGGCGGGCGAGGAGCCGCGCCTCCTCACCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTGACGGCGCGCGACGTCGAGCTGCTCCGCCGGCGCGGCGTCCTGGAGAGCCTGCTGGCCGACGACGAGGAGGCGGCCCGGTTCTTCAGCCGCCTCGGCGAGGGCGCCGCCATGGACTTCAGCCGCCAGGCTTTCGCCGGGCTGTACGAGGACGTGCGCGGGTACTGTGGCTCGTGGTGGCACCGCAACAGGGCGGCGCTCCGGCGTGACTACTTCGGCAGCCCGTGGTCGGCCATCTCCGTCGTAGTCGCGGCGATCGTCGTCTTCCTCGCCGCCACGCAGACTTACTTCACCGTGTTTCCCGCCAAATAA
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| Protein seq | MICQPVAVASLEASVEATLDAISGDQWRARLQPFTIFRVPAYVRDGNRTAYEPRLVSIGPYHHGGAALRAMEDHKWRYLHDLLSRRAGDGAAAVVTASALVAEMRTLEPRARACYSERPVGMDSSDDFVRMLLLDGFFILEFFFKWHTKEADSLCDVGWGLTLVAADLLLMENQIPFFVLERLYEAVAGMQPDKESLFNLLIEYISDEEPIRRPSGDWDVHHLLHLYYECFVPKRPRPRLPESARKAPAAPTRTILRASELREAGVTLVRRSAARDREIDDMKRPLLVNLMAFEQTQAGEEPRLLTSYVALMGQLIVTARDVELLRRRGVLESLLADDEEAARFFSRLGEGAAMDFSRQAFAGLYEDVRGYCGSWWHRNRAALRRDYFGSPWSAISVVVAAIVVFLAATQTYFTVFPAK |
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| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g38120 | LOC_Os01g38120.1 | Chr01 | 21348036 | 21349674 | - | MSU_osa1r7 | ||
| CDS seq | ATGATTTGCCAACCCGTGGCGGTGGCGTCGTTGGAAGCTTCGGTGGAGGCAACGTTGGACGCCATCAGCGGAGATCAATGGCGGGCGCGGCTGCAGCCGTTCACCATCTTCCGCGTCCCCGCCTACGTCCGCGACGGCAACCGCACCGCGTACGAGCCGCGCCTGGTATCCATCGGCCCCTACCACCACGGCGGCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTATCCCGCCGCGCTGGCGACGGCGCCGCTGCCGTGGTCACCGCGTCCGCCTTGGTCGCGGAAATGCGGACCCTCGAGCCCCGGGCGCGCGCGTGCTACAGCGAGCGCCCCGTGGGCATGGACTCCTCCGACGACTTCGTCCGGATGCTCCTCCTCGACGGCTTCTTCATCCTCGAGTTCTTCTTCAAGTGGCACACCAAGGAGGCCGACTCGCTCTGCGACGTCGGCTGGGGCCTCACGCTCGTCGCCGCCGACCTGCTCTTGATGGAGAACCAGATCCCGTTCTTCGTCCTCGAGAGGCTCTACGAAGCCGTCGCCGGCATGCAGCCCGACAAGGAGTCCCTCTTCAACCTCCTCATCGAGTACATCAGCGACGAGGAGCCCATCAGGCGGCCGTCCGGTGACTGGGACGTCCACCACCTCCTCCACCTGTACTACGAGTGCTTCGTTCCCAAGCGGCCACGGCCGCGGCTGCCCGAGTCGGCCCGGAAGGCACCGGCGGCGCCGACGCGGACGATTCTGCGTGCCAGCGAACTGCGGGAGGCGGGTGTCACCCTCGTGCGGCGGAGCGCGGCGCGGGACAGAGAGATCGACGACATGAAGCGACCGCTCCTCGTCAACCTCATGGCGTTCGAGCAGACGCAGGCGGGCGAGGAGCCGCGCCTCCTCACCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTGACGGCGCGCGACGTCGAGCTGCTCCGCCGGCGCGGCGTCCTGGAGAGCCTGCTGGCCGACGACGAGGAGGCGGCCCGGTTCTTCAGCCGCCTCGGCGAGGGCGCCGCCATGGACTTCAGCCGCCAGGCTTTCGCCGGGCTGTACGAGGACGTGCGCGGGTACTGTGGCTCGTGGTGGCACCGCAACAGGGCGGCGCTCCGGCGTGACTACTTCGGCAGCCCGTGGTCGGCCATCTCCGTCGTAGTCGCGGCGATCGTCGTCTTCCTCGCCGCCACGCAGACTTACTTCACCGTGTTTCCCGCCAAATAA
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| Protein seq | MICQPVAVASLEASVEATLDAISGDQWRARLQPFTIFRVPAYVRDGNRTAYEPRLVSIGPYHHGGAALRAMEDHKWRYLHDLLSRRAGDGAAAVVTASALVAEMRTLEPRARACYSERPVGMDSSDDFVRMLLLDGFFILEFFFKWHTKEADSLCDVGWGLTLVAADLLLMENQIPFFVLERLYEAVAGMQPDKESLFNLLIEYISDEEPIRRPSGDWDVHHLLHLYYECFVPKRPRPRLPESARKAPAAPTRTILRASELREAGVTLVRRSAARDREIDDMKRPLLVNLMAFEQTQAGEEPRLLTSYVALMGQLIVTARDVELLRRRGVLESLLADDEEAARFFSRLGEGAAMDFSRQAFAGLYEDVRGYCGSWWHRNRAALRRDYFGSPWSAISVVVAAIVVFLAATQTYFTVFPAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0562600 | SBH | 0.340209 | 0.0 | 0.419927 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0562600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021770 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021380 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021690 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021080 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020840 | SBH | 0.0 | 0.000000 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0360700 | RBH | 0 | 0.0658645 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020820 | SBH | 0.0 | 0.246955 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0352300 | RBH | 0.0346685 | 0.276015 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020930 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020840 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021080 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021020 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020860 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020300 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0020020 | RBH | 0.0 | 0.0 | 0.0 |
