Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0562600 | OGI:01067180 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:21392230-21393650 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAGCAAAATATCAAAATATCTTATATTAGAGGACGGATGTAGTAATACTTTTCTCTACGAACTTAATCAAAATTAAAGCAGTTTGACTTTAACCATAGTCAAAATGTCTTATACCCTGAAACAATGGGAGTAGAGATTTTACAACTCTCAACTGTGTGATTGTGCTTAATTACCAAATTCACCCTTTTTTCAATGGAAACATGGTGAAGTAGGTCTGCATAACTGCGAGCACGACGGCGACTGCGGCGGCGACGAAGGAGATGGCCGACCACGGGCTGGCGAAGTAGTCGCGCCGGAGCGCCGCCGTCTTCCTCCGCCACCATGTCCCGCAGTAGCGGTCCACGTCCTTGTAGAGCCCGACGAAGGCGTGGCTGTCGTGGTTGACGGCGCCACAGTCGCCGAGGTGGTTGAAGAACCGGGCGGCATCGTCGTCGTTGGCCAGCATGTTCTCCAGCACGCCGCGCCGGCGGAGCAGCGCGACGTCGCGCGCCGTGACGATGAGCTGGCCCATCAGCGCCACGTAGCTGCTGAGGAGGATGGCCTCGTCGTTGCCCAGGCTCTGCTCGAACGCGATCAGGTTCGCGAGCAGCGGCGTCTTCGCGTCGTCGATCAATATGGTGGGTATCTCCATGACGCCCCTAAGGGAGTCGAACACCACGTCGTAGCCGTTGTCTGAGTTCCGCCGCACGGCGAAAGTCACCCCGGCTTCGCTCATCTCGACGGCGCACGGTAGCACTCGCGGCGCCGTGGTACTCTGTTCTTGCTGCGGCGTCCGCTGGCTCTGGGGCACGAAGCTCTCGTAGTACAGGTGTAGGATGTGATTGACCTGCCCGTTCGGCCATCTGATTGGAACTTGACGGCCGGCGATGTACTGAAGGAGAAGCTGGAGGAGGTTATTTCCGGCCTGGCCATCCTGTTCGCCAAAGGCGGTAACATATAACTTCTTGAGGACGAAGAACGGGAGCTGATTCTCCATAAGGAGCAAATCGGAGATGACGAACGTGAGGCCCCAACCAACGTCGCATAGCACATCGGGCTGATTTCTGCGCCACTTACGGAAGAACTCGAGGATGAAGCATCCGTCCAGGAGGAGCATCTGGACGAAGTCGTCGGAGCTGAGGTCGACGGGTTGCTCGCTGTAGCAGGCGCGCGCCTCGGCCTCGAGAGACCGCATCTTCTCAACCAAGGCGGATGCGGAGAGTCCGGAGACAAGGGGTGGAAGTGGAACGCGATGGTTGGGTTCCGGCGGTCCTTGCGGAGACAGCAGGTCGTGGAGGTAGCGCCACTTGTGGTCCTCCATGGCGCGGAGCGCGGCGGCGCCGTGGTAGTAGGGGCCGATGGACACCAAGCGCGGCTCGTAGGAGGTCCGGCTGCTCTCGCGAAGAAAGGCGGGGACGCGGAAGATGGTGAACGTCTGAT
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| CDS seq | CAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGCCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGGTGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACCTCGGCGACTGTGGCGCCGTCAACCACGACAGCCACGCCTTCGTCGGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGTGGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAAGGGTGA
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| Protein seq | QTFTIFRVPAFLRESSRTSYEPRLVSIGPYYHGAAALRAMEDHKWRYLHDLLSPQGPPEPNHRVPLPPLVSGLSASALVEKMRSLEAEARACYSEQPVDLSSDDFVQMLLLDGCFILEFFRKWRRNQPDVLCDVGWGLTFVISDLLLMENQLPFFVLKKLYVTAFGEQDGQAGNNLLQLLLQYIAGRQVPIRWPNGQVNHILHLYYESFVPQSQRTPQQEQSTTAPRVLPCAVEMSEAGVTFAVRRNSDNGYDVVFDSLRGVMEIPTILIDDAKTPLLANLIAFEQSLGNDEAILLSSYVALMGQLIVTARDVALLRRRGVLENMLANDDDAARFFNHLGDCGAVNHDSHAFVGLYKDVDRYCGTWWRRKTAALRRDYFASPWSAISFVAAAVAVVLAVMQTYFTMFPLKKG |
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| Function | UPF0481 protein At3g47200 [UniProtKB/Swiss-Prot:Q9SD53] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0562600 | OsNip_01t0562600-01 | Chr01 | 21392230 | 21393650 | - | RAP2018-11-26 | ||
| CDS seq | CAGACGTTCACCATCTTCCGCGTCCCCGCCTTTCTTCGCGAGAGCAGCCGGACCTCCTACGAGCCGCGCTTGGTGTCCATCGGCCCCTACTACCACGGCGCCGCCGCGCTCCGCGCCATGGAGGACCACAAGTGGCGCTACCTCCACGACCTGCTGTCTCCGCAAGGACCGCCGGAACCCAACCATCGCGTTCCACTTCCACCCCTTGTCTCCGGACTCTCCGCATCCGCCTTGGTTGAGAAGATGCGGTCTCTCGAGGCCGAGGCGCGCGCCTGCTACAGCGAGCAACCCGTCGACCTCAGCTCCGACGACTTCGTCCAGATGCTCCTCCTGGACGGATGCTTCATCCTCGAGTTCTTCCGTAAGTGGCGCAGAAATCAGCCCGATGTGCTATGCGACGTTGGTTGGGGCCTCACGTTCGTCATCTCCGATTTGCTCCTTATGGAGAATCAGCTCCCGTTCTTCGTCCTCAAGAAGTTATATGTTACCGCCTTTGGCGAACAGGATGGCCAGGCCGGAAATAACCTCCTCCAGCTTCTCCTTCAGTACATCGCCGGCCGTCAAGTTCCAATCAGATGGCCGAACGGGCAGGTCAATCACATCCTACACCTGTACTACGAGAGCTTCGTGCCCCAGAGCCAGCGGACGCCGCAGCAAGAACAGAGTACCACGGCGCCGCGAGTGCTACCGTGCGCCGTCGAGATGAGCGAAGCCGGGGTGACTTTCGCCGTGCGGCGGAACTCAGACAACGGCTACGACGTGGTGTTCGACTCCCTTAGGGGCGTCATGGAGATACCCACCATATTGATCGACGACGCGAAGACGCCGCTGCTCGCGAACCTGATCGCGTTCGAGCAGAGCCTGGGCAACGACGAGGCCATCCTCCTCAGCAGCTACGTGGCGCTGATGGGCCAGCTCATCGTCACGGCGCGCGACGTCGCGCTGCTCCGCCGGCGCGGCGTGCTGGAGAACATGCTGGCCAACGACGACGATGCCGCCCGGTTCTTCAACCACCTCGGCGACTGTGGCGCCGTCAACCACGACAGCCACGCCTTCGTCGGGCTCTACAAGGACGTGGACCGCTACTGCGGGACATGGTGGCGGAGGAAGACGGCGGCGCTCCGGCGCGACTACTTCGCCAGCCCGTGGTCGGCCATCTCCTTCGTCGCCGCCGCAGTCGCCGTCGTGCTCGCAGTTATGCAGACCTACTTCACCATGTTTCCATTGAAAAAAGGGTGA
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| Protein seq | QTFTIFRVPAFLRESSRTSYEPRLVSIGPYYHGAAALRAMEDHKWRYLHDLLSPQGPPEPNHRVPLPPLVSGLSASALVEKMRSLEAEARACYSEQPVDLSSDDFVQMLLLDGCFILEFFRKWRRNQPDVLCDVGWGLTFVISDLLLMENQLPFFVLKKLYVTAFGEQDGQAGNNLLQLLLQYIAGRQVPIRWPNGQVNHILHLYYESFVPQSQRTPQQEQSTTAPRVLPCAVEMSEAGVTFAVRRNSDNGYDVVFDSLRGVMEIPTILIDDAKTPLLANLIAFEQSLGNDEAILLSSYVALMGQLIVTARDVALLRRRGVLENMLANDDDAARFFNHLGDCGAVNHDSHAFVGLYKDVDRYCGTWWRRKTAALRRDYFASPWSAISFVAAAVAVVLAVMQTYFTMFPLKKG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.340209 | 0.0 | 0.419927 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g38190 | RBH | 0.211877 | 0.0 | 0.099551 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0562600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0021820 | RBH | 0.0 | 22.047739 | 2.236274 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0021440 | RBH | 0.0 | 1.419668 | 0.491968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0021750 | RBH | 0.0 | 1.691549 | 1.255877 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0021140 | RBH | 0.0 | 0.035764 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0020900 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0361600 | RBH | 0.722213 | 1.926792 | 0.018939 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0020880 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0353500 | RBH | 0.652872 | 0.5113815 | 0.3680955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0020990 | RBH | 0.065283 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0020900 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0021140 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0021080 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0020900 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G020250 | RBH | 0.0 | 0.696920 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019970 | RBH | 0.0 | 0.0 | 0.0 |
