Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g33440 | OGI:01059020 | 1/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:18412624-18415350 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGCTACAAGGTGAAAGAGTGAGTACGTACATACGCACGTGGGCTAGGTGGGATGTGCTTTCTTTTGTTTTTTATAAGATAGATATAATTTCTAACCAATGTAGAGTGGAAAAAATAATTTTAGGGAATAGGAGGAAGAGAGCAAAGCAATACCTCTTTTTTCCATAGGATTGCTAATGGTAGGAATAGGAAAAGCCACATTTTCTCTATACAGCAAGGGGAGGAGGTTCTTTCAGATTTCCAACAAATACAGACTCATATTTATAATTATTACAAGCAGTTGTTTGGGAGGGAAGAATTGAGAAACATTCATTTGGAACAGGGGGTTTGGGCTGACAGGTCAAGTTTGAATGAGGGGGATAATGAAAGCTTGATGAAACCTTTTGAGTTGTCAGAAATTGATCATGTCATGAAGAGTATGAAAACAAATACTGCCCCTGGTCCTGATGGTTTTCCAGTGGGTTTCTATAAGAAACTTTGGCCTGAATTTAGGGGTTTGATCAAAGAGATGCTTGATGATCTTCAGAGAGGAATTTTAGACAGTGATAGGATAAATTATAGGGTGATTTCTCTGCTGCCAAAAATTAAGGATGCTAATACAATAAAGCAATATAGACCCATTTGTCCTCAGAATGTGATTCTGAAAATTCTAACTAAAGCTTTAACCATGAGGATAACTGGTGTGATTGGGGGGATTATTAACTGGACACAGACTGCGTTCATTCCTGGGAGGTATATTTTGGATGGGTGTGTAATTCTCCATGAGGTTTTGCATGAGCTCCATAAAAAGAAAGAATCGGGTGTTATCTTTAAGATAGATTTTGAAAAGGCTTATGATAGGGTGCAGTGGGGGTTTCTTTATGAGGTGATGCAGAAGAAGAATTTTAACATCATTTTTATTGAATGGATTAAGAAGATCACTGAAGGGGGTAGAGTCAGTATAAATATTAATGGGGAACATGGACCTTTTTTCAAGACTTTTTCTAATAGGGGGTCTGAGGCAGGGGGATCCTCTGTCTCCTATCTTATTTAATCTAATAGGGGATGCTTTGTCAGTTATTCTGGATGGTGCTAATAGTAATGGGGTTTTGGAGGGGTTGGTTCTTAATCTGGTTCCAGGGGGTCTTACTCATCTCCAGTATGCTGATGACACTATTCTTTTTACTAAAGCTACTAAGGAAAATGTGTTAACCTTGAAATTCTTGCTGTTCTGTTTTGAAGAGATGTTTGGAATGAAAATCAATTATCAGAAGAGTGAGGTTTATGTGTTGGGGGTTCCAAAGGATGAGGAGGAATTGTATGCTGACATGCTTAATTGTAAAGTGGGCTCTCTTCCTTTTACTTACTTGGGTTTGCCTATGGGGGTTGGTAAGGTAGGGAAAAGGGATTTGCTTCCAATCATGCAAAAAATAGAGAAAAGATTGCAATCCTGGCACATTGGTCATCTCTCCTATGGGGGGAGGGAGATCAGGATCAATACCTGTCTGTCCAGTGTCCTAATGTATGCTATGGGATTTTTTAAGCTTTCTGAGGAGTTCCACAAAAATTTAGACACTGTAAGGGGAGATTCTATTGGTAGGGGAATGGGAAGAAGAAGAAATATCACCTTATTAAGTGGCAGGGCTTGTGTAGACCTAAAGACTTTTGTGGCTTGGGATTCTTGGACACTAGGACCATGAATATCTGCCTGTTGAGTAAATGGATCATGGAGTTGGAAGGCAACTCTCAGGATATGAGCTATGTTGTTCTTAGGAATAAGTACTCAGGAGTTCTGCTAGTGGGGGGTCCCAGTTTTGGAAAGGCCTTCATGAGTGCAAAGTCTGGTTAAATTATTCGGTAGTTAAGAAGATTGGTAATGGAGAAAAAAACCCAGTTCTGGGAGGATGTTTGGTTGGGAGATGTTCCCCTAAAATTTTTGTTTCCTTCCTTATATATGGTGAATAATCAACAACATCTTTTGGTTAAGGAGGTTATGGGTGCCCCTAATTGGGTTTTGTCCTTTAGAAGAAATCTAGATCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCTAGATGTTTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAGGTTGTTAAAGTTTGGGGGTGTTGTGGACAAAGAGATGAAAGAGATTTGGGGGTGCAAAGTTCCTTTGAAAGTCAAGCATTTCTTGTTTTTGGCTGGGAGAGGGAGAATACCTTGCGCTAAACTCTTAGTTCAGAGAAATTGGAAGGGGTACTAAATTTTGTAAAATATGCCTGGGAACTGAATCTACTAACCATGTTCTTTTTACTTGTCCTATTGCTTGCTTTGCTTGGTGCTCTGTAATGGAGGTAATTGGGGGGGGGGGGGGTGGGGTTAATTCCAACCAATTTTTGGGATGGTATAAGAGTTGTTAAGGATAAATTGGGGGTGAACTTAGGTCTTTTTCTTTGTGCTAGTCTGTGCTGGGGTTTGTGGTTGGTAAGAAATGACTTTGTTTCTGAGAATAAATTAGTGAAATCACCTTTGCAGGTAGTGTACAAGGCAATTTCCTTGATGCAGAGGGAAGGTGCTGCTGTCAAAGGAAAGAGATCGCGAAGCTCTGAACGCGCTGCTTGAGAAGCTGAAGGCTAAGCTGGAGTCTCTACGTCCAGTGAATGTGCTACCGGACAATATTAGTGTTTAA
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| CDS seq | ATGGGCTACAAGGTGAAAGAGTCAAGTTTGAATGAGGGGGATAATGAAAGCTTGATGAAACCTTTTGAGTTGTCAGAAATTGATCATGTCATGAAGAGTATGAAAACAAATACTGCCCCTGGTCCTGATGGTTTTCCAGTGGGTTTCTATAAGAAACTTTGGCCTGAATTTAGGGGTTTGATCAAAGAGATGCTTGATGATCTTCAGAGAGGAATTTTAGACAGTGATAGGATAAATTATAGGGTGATTTCTCTGCTGCCAAAAATTAAGGATGCTAATACAATAAAGCAATATAGACCCATTTGTCCTCAGAATGTGATTCTGAAAATTCTAACTAAAGCTTTAACCATGAGGATAACTGGTGTGATTGGGGGGATTATTAACTGGACACAGACTGCGTTCATTCCTGGGAGGTATATTTTGGATGGGTGTGTAATTCTCCATGAGGTTTTGCATGAGCTCCATAAAAAGAAAGAATCGGGTGTTATCTTTAAGATAGATTTTGAAAAGGCTTATGATAGGGTGCAGTGGGGGTTTCTTTATGAGGTGATGCAGAAGAAGAATTTTAACATCATTTTTATTGAATGGATTAAGAAGATCACTGAAGGGGGGGATGCTTTGTCAGTTATTCTGGATGGTGCTAATAGTAATGGGGTTTTGGAGGGGTTGGTTCTTAATCTGGTTCCAGGGGGTCTTACTCATCTCCAGTATGCTGATGACACTATTCTTTTTACTAAAGCTACTAAGGAAAATGTGTTAACCTTGAAATTCTTGCTGTTCTGTTTTGAAGAGATGTTTGGAATGAAAATCAATTATCAGAAGAGTGAGGTTTATGTGTTGGGGGTTCCAAAGGATGAGGAGGAATTGTATGCTGACATGCTTAATTGTAAAGTGGGCTCTCTTCCTTTTACTTACTTGGGTTTGCCTATGGGGGTTGGTAAGGAGGTTATGGGTGCCCCTAATTGGGTTTTGTCCTTTAGAAGAAATCTAGATCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCTAGATGTTTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAGGTTGTTAAAGTTTGGGGGTGTTGTGGACAAAGAGATGAAAGAGATTTGGGGGTGCAAAGTTCCTTTGAAAGTCAAGCATTTCTTGTTTTTGGCTGGGAGAGGGAGAATACCTTGCGCTAAACTCTTAGTTCAGAGAAATTGGAAGGGAGGGAAGGTGCTGCTGTCAAAGGAAAGAGATCGCGAAGCTCTGAACGCGCTGCTTGAGAAGCTGAAGGCTAAGCTGGAGTCTCTACGTCCAGTGAATGTGCTACCGGACAATATTAGTGTTTAA
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| Protein seq | MGYKVKESSLNEGDNESLMKPFELSEIDHVMKSMKTNTAPGPDGFPVGFYKKLWPEFRGLIKEMLDDLQRGILDSDRINYRVISLLPKIKDANTIKQYRPICPQNVILKILTKALTMRITGVIGGIINWTQTAFIPGRYILDGCVILHEVLHELHKKKESGVIFKIDFEKAYDRVQWGFLYEVMQKKNFNIIFIEWIKKITEGGDALSVILDGANSNGVLEGLVLNLVPGGLTHLQYADDTILFTKATKENVLTLKFLLFCFEEMFGMKINYQKSEVYVLGVPKDEEELYADMLNCKVGSLPFTYLGLPMGVGKEVMGAPNWVLSFRRNLDQSDKAQLDVLKSLLQDVRLDVLPDSLIWPHEKNKKFTTKSMYRLLKFGGVVDKEMKEIWGCKVPLKVKHFLFLAGRGRIPCAKLLVQRNWKGGKVLLSKERDREALNALLEKLKAKLESLRPVNVLPDNISV |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:O00370] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g33440 | LOC_Os01g33440.1 | Chr01 | 18412624 | 18415350 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGCTACAAGGTGAAAGAGTCAAGTTTGAATGAGGGGGATAATGAAAGCTTGATGAAACCTTTTGAGTTGTCAGAAATTGATCATGTCATGAAGAGTATGAAAACAAATACTGCCCCTGGTCCTGATGGTTTTCCAGTGGGTTTCTATAAGAAACTTTGGCCTGAATTTAGGGGTTTGATCAAAGAGATGCTTGATGATCTTCAGAGAGGAATTTTAGACAGTGATAGGATAAATTATAGGGTGATTTCTCTGCTGCCAAAAATTAAGGATGCTAATACAATAAAGCAATATAGACCCATTTGTCCTCAGAATGTGATTCTGAAAATTCTAACTAAAGCTTTAACCATGAGGATAACTGGTGTGATTGGGGGGATTATTAACTGGACACAGACTGCGTTCATTCCTGGGAGGTATATTTTGGATGGGTGTGTAATTCTCCATGAGGTTTTGCATGAGCTCCATAAAAAGAAAGAATCGGGTGTTATCTTTAAGATAGATTTTGAAAAGGCTTATGATAGGGTGCAGTGGGGGTTTCTTTATGAGGTGATGCAGAAGAAGAATTTTAACATCATTTTTATTGAATGGATTAAGAAGATCACTGAAGGGGGGGATGCTTTGTCAGTTATTCTGGATGGTGCTAATAGTAATGGGGTTTTGGAGGGGTTGGTTCTTAATCTGGTTCCAGGGGGTCTTACTCATCTCCAGTATGCTGATGACACTATTCTTTTTACTAAAGCTACTAAGGAAAATGTGTTAACCTTGAAATTCTTGCTGTTCTGTTTTGAAGAGATGTTTGGAATGAAAATCAATTATCAGAAGAGTGAGGTTTATGTGTTGGGGGTTCCAAAGGATGAGGAGGAATTGTATGCTGACATGCTTAATTGTAAAGTGGGCTCTCTTCCTTTTACTTACTTGGGTTTGCCTATGGGGGTTGGTAAGGAGGTTATGGGTGCCCCTAATTGGGTTTTGTCCTTTAGAAGAAATCTAGATCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCTAGATGTTTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAGGTTGTTAAAGTTTGGGGGTGTTGTGGACAAAGAGATGAAAGAGATTTGGGGGTGCAAAGTTCCTTTGAAAGTCAAGCATTTCTTGTTTTTGGCTGGGAGAGGGAGAATACCTTGCGCTAAACTCTTAGTTCAGAGAAATTGGAAGGGAGGGAAGGTGCTGCTGTCAAAGGAAAGAGATCGCGAAGCTCTGAACGCGCTGCTTGAGAAGCTGAAGGCTAAGCTGGAGTCTCTACGTCCAGTGAATGTGCTACCGGACAATATTAGTGTTTAA
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| Protein seq | MGYKVKESSLNEGDNESLMKPFELSEIDHVMKSMKTNTAPGPDGFPVGFYKKLWPEFRGLIKEMLDDLQRGILDSDRINYRVISLLPKIKDANTIKQYRPICPQNVILKILTKALTMRITGVIGGIINWTQTAFIPGRYILDGCVILHEVLHELHKKKESGVIFKIDFEKAYDRVQWGFLYEVMQKKNFNIIFIEWIKKITEGGDALSVILDGANSNGVLEGLVLNLVPGGLTHLQYADDTILFTKATKENVLTLKFLLFCFEEMFGMKINYQKSEVYVLGVPKDEEELYADMLNCKVGSLPFTYLGLPMGVGKEVMGAPNWVLSFRRNLDQSDKAQLDVLKSLLQDVRLDVLPDSLIWPHEKNKKFTTKSMYRLLKFGGVVDKEMKEIWGCKVPLKVKHFLFLAGRGRIPCAKLLVQRNWKGGKVLLSKERDREALNALLEKLKAKLESLRPVNVLPDNISV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g08725 | RBH | 0.243436 | 0.164773 | 0.153151 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005690 | SBH | 0.000000 | 0.000000 | 0.822811 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0003910 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005790 | SBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005690 | SBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0003510 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0070300 | SBH | 0.0607155 | 0.4176305 | 0.16561 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0003570 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005900 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005750 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005760 | SBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005710 | SBH | 0.000000 | 1.931193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G005550 | SBH | 0.000000 | 0.000000 | 1.118834 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0003510 | SBH | 0.0 | 0.0 | 0.0 |
