Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsN22_12G005550 | OGI:12011760 | 15/16 | N22 | OsN22RS2 | Gramene(+IsoSeq) | Chr12:4268608-4269364 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTAAGCACTAATATTGTCCGGTAGCACATTCACAGGACGTAGAGACTCCAGCTTAGCCTTCAGCTTCTCAAGCAGCGCGTTCAAAGCTTCGCGATCTCTTTCTTTTGACAGCAGCACCTTCCATCTCTGCATCAAGGAAATTGCCTTGTACACTACCTGCAAAGGTGATCTCACTAATTTATTCTCAAAAACAAAGTCATTTCTTACCAACCACAAACCCCAGCACAGACTAGCACAAAGAAAAAGGCCTAAATTCACCCCCAATTTATTATCCTTAACAGCTCTTATACCATCCCAAAAATTGGTTGGAATTAAACCCCCCCCCCCCCCCCAATTACCTCCATTACAGAGCACCAAGCAAAGCAAGCAATAGGACAAGTAAAAAGAGCATGGTTAGTAGATTCAGTTCTCAGGCATAATTTACAAAATTTAGTACCCCCTTCCAATTTCTCTGAACTAAGAGTTCAGCACAAGGTATTCTCCCTCTCCCAGCCAAAAACAAGAAATGCTTGACTTTTAAAGGAACTTTGCACCCCCAAATCTCTGATATCTCTTTGTCCACAACACCCCCAAACTTTAACAACTTATACATAGATTTAGTAGTGAACTTCTTATTCTTCTCATGAGGCCAAATTAAGCTGTCAGGCAAATCATCTAGCCTCACATCCTGCAGCAAACTTTTCAAAACGTCTAATTGAGCCTTGTCAGACTGGTCCAGATTTCTTCTAAAGGACAAATCCCAATTAGGGGCACCCAT
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| CDS seq | ATGGGTGCCCCTAATTGGGATTTGTCCTTTAGAAGAAATCTGGACCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCTAGATGATTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAAGTTGTTAAAGTTTGGGGGTGTTGTGGACAAAGAGATATCAGAGATTTGGGGGTGCAAAGTTCCTTTAAAAGTCAAGCATTTCTTGTTTTTGGCTGGGAGAGGGAGAATACCTTGTGCTGAACTCTTAGTTCAGAGAAATTGGAAGGGGGTAGTGTACAAGGCAATTTCCTTGATGCAGAGATGGAAGGTGCTGCTGTCAAAAGAAAGAGATCGCGAAGCTTTGAACGCGCTGCTTGAGAAGCTGAAGGCTAAGCTGGAGTCTCTACGTCCTGTGAATGTGCTACCGGACAATATTAGTGCTTAA
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| Protein seq | MGAPNWDLSFRRNLDQSDKAQLDVLKSLLQDVRLDDLPDSLIWPHEKNKKFTTKSMYKLLKFGGVVDKEISEIWGCKVPLKVKHFLFLAGRGRIPCAELLVQRNWKGVVYKAISLMQRWKVLLSKERDREALNALLEKLKAKLESLRPVNVLPDNISA |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsN22_12G005550 | OsN22_12G005550_01 | Chr12 | 4268608 | 4269364 | - | NAM | ||
| CDS seq | ATGGGTGCCCCTAATTGGGATTTGTCCTTTAGAAGAAATCTGGACCAGTCTGACAAGGCTCAATTAGACGTTTTGAAAAGTTTGCTGCAGGATGTGAGGCTAGATGATTTGCCTGACAGCTTAATTTGGCCTCATGAGAAGAATAAGAAGTTCACTACTAAATCTATGTATAAGTTGTTAAAGTTTGGGGGTGTTGTGGACAAAGAGATATCAGAGATTTGGGGGTGCAAAGTTCCTTTAAAAGTCAAGCATTTCTTGTTTTTGGCTGGGAGAGGGAGAATACCTTGTGCTGAACTCTTAGTTCAGAGAAATTGGAAGGGGGTAGTGTACAAGGCAATTTCCTTGATGCAGAGATGGAAGGTGCTGCTGTCAAAAGAAAGAGATCGCGAAGCTTTGAACGCGCTGCTTGAGAAGCTGAAGGCTAAGCTGGAGTCTCTACGTCCTGTGAATGTGCTACCGGACAATATTAGTGCTTAA
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| Protein seq | MGAPNWDLSFRRNLDQSDKAQLDVLKSLLQDVRLDDLPDSLIWPHEKNKKFTTKSMYKLLKFGGVVDKEISEIWGCKVPLKVKHFLFLAGRGRIPCAELLVQRNWKGVVYKAISLMQRWKVLLSKERDREALNALLEKLKAKLESLRPVNVLPDNISA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 1.118834 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g08725 | RBH | 0.243436 | 0.164773 | 0.153151 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0005690 | RBH | 0.000000 | 0.000000 | 0.822811 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0005760 | RBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0005790 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0005690 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0005780 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0070300 | RBH | 0.0607155 | 0.4176305 | 0.16561 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0005750 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0075400 | RBH | 74.633438 | 14.454308 | 4.99907 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0005900 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0005750 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0005760 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0005710 | RBH | 0.000000 | 1.931193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005760 | RBH | 0.000000 | 0.000000 | 0.732450 |
