Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g25740 | OGI:01044920 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:14587007-14591754 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGAACAAAATGATTCATCCAAATATTGTCAACATAATCGCAGATACAGATTAATGAATTTGTGGACTTAGAAATACCTAGCTCCTAAAAACCTTCGATAGTTGTGCCAAACAAGACTTTAGTAAGCTTTAAGAATGGGACACTCCCATTAAGCAAAACTGTGCAAAATTCATACAGCACGAGTGCAATTATCAATCGTACCATTATTGCGCTGCTGTCCTGTGAACTTCTCTTATGGGCAGCAATTCCATAGCCACATGCTTATCTTGCACAAACAAATTTTCAAAAATTCATTAATCAATTCTACTGCTTTATGCATAAAAATTGTTTAAGCATCTCAATGTATCAAATGTTAACCAAAACTAAACTGAAGCGGTTAAATAAGCTTTTTTTTTTATTGCTGAAGAGTACATTAATTTAAGTGTTGCATTCATGGTAAGAACAAGAACAACTATACAGAGTTTTTGTATGTACGAAGTTGAGTACTCACATATGTCAACGTCATTTACCTAGACAAATTTGAAGAATTCAGCAGAAGAAAGATTATGTTCTTGGTTTTCCATAGTCCACATCATGGTCCACATTTGGAGGGAAAATGAAAATTGAGACAGTACCGAGTAGATATCTCCATATATTTGTACCTCTGAAGAGAACAATCCCTGATACAAATTACTGATGCAAAAATAAGTTGTTTTCGGCCCCCATAGACATTATGAAATTCCTCTTGACTTGAATACAGAAAGGATTCAATCATGCACTACCTTTTGTACAGGGAGTATTTGAATGTTTATTTGGTAACGATGCCATGTTCTCGCAGCCGACAATGGAGACAGTTTCCAATGATGAGAAGGATCCTTCGTATGACTCCACTAGTTTCAGCTTTTCACAAAATCGAATATCTAGTTGCCCAAGTTTATCAAGCTTCCCTGACAGGACTTCAAGCTTAGGACACTCTGAAATAATTATAGTTCTCATGGATGAAGGAAGAGCAAGAACCTCTACCAAGCTTACACAATATGCTATTCTTAGGTATTCTAAGCATGGCAGGAGATATTTGCTTCTCCATGTTCCTTGATCTTCTATAGTTATAGATGCACTGAGATCACTGCTAGATTCTGATATAGCCATGCCGTTATTACGCTCAACATATTTACTTTCGACTTTTATATCCTGCTTTCCCCTTATAGATCTAAGCTCAGGGCAACTCCAAATGTGTATTTCCTTCAGATATAGGGGAAAATTGAGAAGCACTACTAAGCTTTGACAACTTATCACTGTTAGAGACTCCATACAAGGTAAATGTGTATTTGTTGCCAAAGGTGCATCTGCAGAGGATACTAGGATGCTATAAGATTCTGACCTCAAATCATCTTTGTTTTCAGCATACCAACTCTTATTTTCAGTGTCCTTTTGACCCCATATGAACTCGAGCTTACCACATCTCTCAATATATATTTCCCTTAGAGATGAAGGAAGGATGAGAACCTCAACCAATTTGGGACAATCTTTTATTTCTATATACTCCAAGCATGGGAGTAGCTGATTTTTTTCTAATGGCGCTTCTAGAACATCACCAGATTTAGTCAGATTATTGCAAGAATAAACTGTTAATCTTTTCAAGGATACCAAGCATTGGAGCTGTTTCAGTGGCCAATAGACGAGTTCGTTGCAGCAGTTGATTACTAAATCTTGCAGGTTCACAAAACATTCCCAATCCATACAGAAGAAGTAACATCCCCGTAGTTCCATAGTTGCATTAGAAGTTTTATGACTAAATTCTTCTGTACCACTGACCTGTTGTATTGCACATTGTACTTGTGAGGAAGAAGCTGCAATTGTTAATCTGACATCGGACAGTGTTGCCATATATCTTGCTATGGATAACCACATCAATGATTTATCTTCGGGAAATACTAATACTCTCAGCTTTGGTGCTTCAGGTAGAGTTGCCAACTCCGGGCACTCCATAATATTAGCATTCTCAAGTTGAGGAAATATTGGTTGATATCTTTCTTGTGTTCCCCATGCCTTCAAACTCTTCAGATTGTGCAACTTGAGGTTTTTTAAAGCTGGAAATGGGGAGTTCCCTTTATTATCTAAGAATTGAGAAGATTCACCAAATATTACTGCATCTGGAAAGTTTTCCAAGTTAGAGCAACTATCAATTGATAGAATCTCTAGAAGGGGAAACACTAGCTTTTGCCCAGGTCCTCCTTTTACTTCCCACCAACCATTCAAACTTTTTAGATCAACTAAAATAAGTTCCCTTAATTTAGGAAACGTTGAAGATGTCGAATTGTCAACACCCGAGCACAGGTATTGCAAACTTTGCAGCCCTTCCAAATGAAGAATTTCAAGAGATGGCAATTGCCACAATTGCGGAAGGCTCTCGCACATTGTGCAACTAACTAGTTGGAGCTTGATTAGATCTTGCATCATTGTGGGGTTTGTCACCCAAGTTGGAAAATTGGAACTTCTGTAGGAATCCACAGATAGAATTTTAAGCCTGCTGTTTGGAGTAAAAGCATCTAGTACCTTCTCATGTAAATCAATCACTTCATTATGATCATCCTTCCATCCAAAAGATAGCTGGGTTAGGTCTTTCCCTTCCCCATGGCTGCTCATGGATACATCTGCCTCTGTTACATTTTGTAGATGACATAGCTGGAGTTGACCTTGGAGTTTGAGGTGCCTTAGTTCTCCAATGCTACTACAACCAGAATTATTGCCCACAACAAAATATGTTAGTGTCTGTAGGGATGTTAGATGCCCAAGGTTTGGAGGCATGGATTTTAAGGACATGCATCCATCAGTATAGAGATGACGAAGGCCAATCATGTTTTTAATATCCTTAGGAAGGTGACCAAGAGATATACAACCCGAAAGATTTAATGTTTGTAGATTATACAAAATGCATATTTCTTCAGGAAGTGACTTGATATGACAATTGCCAGAGAGATCAAGAAACCTGAGGTGCTTCAAGTGCTTCACTCTTATCTGAAGTCCACCCAAGTTATGGTAATAGAGGCGTAATGCTCGAAGAGAATGGCATTTTGATAAATAATGTAACGAAGAATTGCTAGTATTCATAATGCACAAAAGTGTTTGCATACCTTGACATCTCTGCTTTAGTGAAACATCTGAGAGGGTTTCTGGACGATCAGAGCACAAGAACAAATGACGAACAGTATTTGGCAAAAACTCAATGTAATTGTGACCCTCAGCTATAGTAAAACATTCTTTTCCAATAACAGAAACAGCAACATCATGCATGAGATCATGGATGCTACATATAGTTCGGTAACTATGTCCACTTTCATCCTTGTGTAAAGGTACCTCCTTGACATCCTGAAAGAATGACCTTGAAGCAAGCTCATTGAAAATCTGCTTGCCTTTTGTTTCTGGGCGAATTGCTTCTTCAGATGGGATAAAATCATTCGCCATCCAGAGCAATATCAGCATTTCCACATCAATCACATAGTTTTTGGGAAAGATCGCACAAAAAGCAAAACATTGCTTCATGTATGATGGCAGATCATCATAGCTGAGCTTCAGTATAGGTAAAATTCCATTCTCGTCATCACAGATGCTACTTTTGGTTAATACGGCCCTCCATTCTTCTACAGCTTTCCGTGTGCTTAACATTGAACCCAAGGCTTTTGCAGCTAAAGGGGACCCGTGACATCTGTCCATAATCTCCCAGCCAATTTGAACCAGCTCATCAGGTTTCTGCTCATCAAAACGGAATGCTCTTTTTTCAAAAATTGCAAGCAAATCCTCTTTTTCCATTCTTACCAATTGATGGGCTTTAGTTGTTCCCATTAGCTGAGCTACCCCTTGATCACGTGTTGTCATCAATATGGCACTCCCAACACCACCATATTGTTGAAGGCAATATTTTAGCTTCGCCCACTTATCGGCATCGCAATTCCATACATCATCCAAAATAAGGAGGTACCTCTTTCCACGGACTTCCTGCTGGAGCTTCTCTAGTGCATTTTCGCATTCTTTCTCAATTGACATGCTGATCTTGTTAGCAATGCTTGTAACATCAAAATCATCCAAGACACACACCCACTTCCGTAGCTGGAAATGCTTTTGGATCTCAGGATCGTTGTAAATTATCTGAGCAAAAGTGGTCTTGCCCAAACCACCCATTCCAATGATTGGAAGGACCATGAGATTCCTGTTGCTGGCATCGGTAAGCAGCAAATTAACAATATGCTGCTTCTCTTTCTCTCTGCTGACAATATTCTCAGAGTCAATGATGATTGAATCTGTCTGTCTCCACTGCTTGGAGGTTGGCATTTGTGGTCTATACCTGAACCCAAAGGCATTCATATCAGCAACAAGGTCCTCAATAGAACTGACAATTTTACGCAGCTTCTTGCTCATCCTGTAACGGAACACTAGAGGATTGTTAGCAAGGACTATACTAGTGCTGAGATTTCCATGATTTCCCCTCCTCTTAGCTTCACGACGAAGGGCTTCATACTTGAACTCATCAAATATGTCATTAGCTTTGTAAGCAACAGCCTTGAGTGCTTTGAGCCAAGCACTTACCCCAGGACGGTGAGTTCCTTGCTCCTCAGCATCAATGATGACATCCAATATGGCCGGCAGTTTGCGCTCCAGAATTGTGAGCTGCTCCTCCATACCATCCAGCTCTTGGTACTGTTGCAACAGGTAATTGGAGACCTGCCGATTGACCAAGGCGATGAGAGGCCCAAGCAGCATGCTCGTAGCCAT
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| CDS seq | ATGGCTACGAGCATGCTGCTTGGGCCTCTCATCGCCTTGGTCAATCGGCAGGTCTCCAATTACCTGTTGCAACAGTACCAAGAGCTGGATGGTATGGAGGAGCAGCTCACAATTCTGGAGCGCAAACTGCCGGCCATATTGGATGTCATCATTGATGCTGAGGAGCAAGGAACTCACCGTCCTGGGGTAAGTGCTTGGCTCAAAGCACTCAAGGCTGTTGCTTACAAAGCTAATGACATATTTGATGAGTTCAAGTATGAAGCCCTTCGTCGTGAAGCTAAGAGGAGGGGAAATCATGGAAATCTCAGCACTAGTATAGTCCTTGCTAACAATCCTCTAGTGTTCCGTTACAGGATGAGCAAGAAGCTGCGTAAAATTGTCAGTTCTATTGAGGACCTTGTTGCTGATATGAATGCCTTTGGGTTCAGGTATAGACCACAAATGCCAACCTCCAAGCAGTGGAGACAGACAGATTCAATCATCATTGACTCTGAGAATATTGTCAGCAGAGAGAAAGAGAAGCAGCATATTGTTAATTTGCTGCTTACCGATGCCAGCAACAGGAATCTCATGGTCCTTCCAATCATTGGAATGGGTGGTTTGGGCAAGACCACTTTTGCTCAGATAATTTACAACGATCCTGAGATCCAAAAGCATTTCCAGCTACGGAAGTGGGTGTGTGTCTTGGATGATTTTGATGTTACAAGCATTGCTAACAAGATCAGCATGTCAATTGAGAAAGAATGCGAAAATGCACTAGAGAAGCTCCAGCAGGAAGTCCGTGGAAAGAGGTACCTCCTTATTTTGGATGATGTATGGAATTGCGATGCCGATAAGTGGGCGAAGCTAAAATATTGCCTTCAACAATATGGTGGTGTTGGGAGTGCCATATTGATGACAACACGTGATCAAGGGGTAGCTCAGCTAATGGGAACAACTAAAGCCCATCAATTGGTAAGAATGGAAAAAGAGGATTTGCTTGCAATTTTTGAAAAAAGAGCATTCCGTTTTGATGAGCAGAAACCTGATGAGCTGGTTCAAATTGGCTGGGAGATTATGGACAGATGTCACGGGTCCCCTTTAGCTGCAAAAGCCTTGGGTTCAATGTTAAGCACACGGAAAGCTGTAGAAGAATGGAGGGCCGTATTAACCAAAAGTAGCATCTGTGATGACGAGAATGGAATTTTACCTATACTGAAGCTCAGCTATGATGATCTGCCATCATACATGAAGCAATGTTTTGCTTTTTGTGCGATCTTTCCCAAAAACTATGTGATTGATGTGGAAATGCTGATATTGCTCTGGATGGCGAATGATTTTATCCCATCTGAAGAAGCAATTCGCCCAGAAACAAAAGGCAAGCAGATTTTCAATGAGCTTGCTTCAAGGTCATTCTTTCAGGATGTCAAGGAGGTACCTTTACACAAGGATGAAAGTGGACATAGTTACCGAACTATATGTAGCATCCATGATCTCATGCATGATGTTGCTGTTTCTGTTATTGGAAAAGAATGTTTTACTATAGCTGAGGGTCACAATTACATTGAGTTTTTGCCAAATACTGTTCGTCATTTGTTCTTGTGCTCTGATCGTCCAGAAACCCTCTCAGATGTTTCACTAAAGCAGAGATGTCAAGGTATGCAAACACTTTTGTGCATTATGAATACTAGCAATTCTTCGTTACATTATTTATCAAAATGCCATTCTCTTCGAGCATTACGCCTCTATTACCATAACTTGGGTGGACTTCAGATAAGAGTGAAGCACTTGAAGCACCTCAGGTTTCTTGATCTCTCTGGCAATTGTCATATCAAGTCACTTCCTGAAGAAATATGCATTTTGTATAATCTACAAACATTAAATCTTTCGGGTTGTATATCTCTTGGTCACCTTCCTAAGGATATTAAAAACATGATTGGCCTTCGTCATCTCTATACTGATGGATGCATGTCCTTAAAATCCATGCCTCCAAACCTTGGGCATCTAACATCCCTACAGACACTAACATATTTTGTTGTGGGCAATAATTCTGGTTGTAGTAGCATTGGAGAACTAAGGCACCTCAAACTCCAAGGTCAACTCCAGCTATGTCATCTACAAAATGTAACAGAGGCAGATGTATCCATGAGCAGCCATGGGGAAGGGAAAGACCTAACCCAGCTATCTTTTGGATGGAAGGATGATCATAATGAAGTGATTGATTTACATGAGAAGGTACTAGATGCTTTTACTCCAAACAGCAGGCTTAAAATTCTATCTGTGGATTCCTACAGAAGTTCCAATTTTCCAACTTGGGTGACAAACCCCACAATGATGCAAGATCTAATCAAGCTCCAACTAGTTAGTTGCACAATGTGCGAGAGCCTTCCGCAATTGTGGCAATTGCCATCTCTTGAAATTCTTCATTTGGAAGGGCTGCAAAGTTTGCAATACCTGTGCTCGGGTGTTGACAATTCGACATCTTCAACGTTTCCTAAATTAAGGGAACTTATTTTAGTTGATCTAAAAAGTTTGAATGGTTGGTGGGAAGTAAAAGGAGGACCTGGGCAAAAGCTAGTGTTTCCCCTTCTAGAGATTCTATCAATTGATAGTTGCTCTAACTTGGAAAACTTTCCAGATGCAGTAATATTTGGTGAATCTTCTCAATTCTTAGATAATAAAGGGAACTCCCCATTTCCAGCTTTAAAAAACCTCAAGTTGCACAATCTGAAGAGTTTGAAGGCATGGGGAACACAAGAAAGATATCAACCAATATTTCCTCAACTTGAGAATGCTAATATTATGGAGTGCCCGGAGTTGGCAACTCTACCTGAAGCACCAAAGCTGAGAGTATTAGTATTTCCCGAAGATAAATCATTGATGTGGTTATCCATAGCAAGATATATGGCAACACTGTCCGATGTCAGATTAACAATTGCAGCTTCTTCCTCACAAGTACAATGTGCAATACAACAGGTCAGTGGTACAGAAGAATTTAGTCATAAAACTTCTAATGCAACTATGGAACTACGGGGATGTTACTTCTTCTGTATGGATTGGGAATGTTTTGTGAACCTGCAAGATTTAGTAATCAACTGCTGCAACGAACTCGTCTATTGGCCACTGAAACAGCTCCAATGCTTGGTATCCTTGAAAAGATTAACAGTTTATTCTTGCAATAATCTGACTAAATCTGGTGATGTTCTAGAAGCGCCATTAGAAAAAAATCAGCTACTCCCATGCTTGGAGTATATAGAAATAAAAGATTGTCCCAAATTGGTTGAGGTTCTCATCCTTCCTTCATCTCTAAGGGAAATATATATTGAGAGATGTGGTAAGCTCGAGTTCATATGGGGTCAAAAGGACACTGAAAATAAGAGTTGGTATGCTGAAAACAAAGATGATTTGAGGTCAGAATCTTATAGCATCCTAGTATCCTCTGCAGATGCACCTTTGGCAACAAATACACATTTACCTTGTATGGAGTCTCTAACAGTGATAAGTTGTCAAAGCTTAGTAGTGCTTCTCAATTTTCCCCTATATCTGAAGGAAATACACATTTGGAGTTGCCCTGAGCTTAGATCTATAAGGGGAAAGCAGGATATAAAAGTCGAAAGTAAATATGTTGAGCGTAATAACGGCATGGCTATATCAGAATCTAGCAGTGATCTCAGTGCATCTATAACTATAGAAGATCAAGGAACATGGAGAAGCAAATATCTCCTGCCATGCTTAGAATACCTAAGAATAGCATATTGTGTAAGCTTGGTAGAGGTTCTTGCTCTTCCTTCATCCATGAGAACTATAATTATTTCAGAGTGTCCTAAGCTTGAAGTCCTGTCAGGGAAGCTTGATAAACTTGGGCAACTAGATATTCGATTTTGTGAAAAGCTGAAACTAGTGGAGTCATACGAAGGATCCTTCTCATCATTGGAAACTGTCTCCATTGTCGGCTGCGAGAACATGGCATCGTTACCAAATAAACATTCAAATACTCCCTGTACAAAAGGGATTGTTCTCTTCAGAGGTACAAATATATGGAGATATCTACTCGGTACTGTCTCAATTTTCATTTTCCCTCCAAATGTGGACCATGATGTGGACTATGGAAAACCAAGAACATAA
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| Protein seq | MATSMLLGPLIALVNRQVSNYLLQQYQELDGMEEQLTILERKLPAILDVIIDAEEQGTHRPGVSAWLKALKAVAYKANDIFDEFKYEALRREAKRRGNHGNLSTSIVLANNPLVFRYRMSKKLRKIVSSIEDLVADMNAFGFRYRPQMPTSKQWRQTDSIIIDSENIVSREKEKQHIVNLLLTDASNRNLMVLPIIGMGGLGKTTFAQIIYNDPEIQKHFQLRKWVCVLDDFDVTSIANKISMSIEKECENALEKLQQEVRGKRYLLILDDVWNCDADKWAKLKYCLQQYGGVGSAILMTTRDQGVAQLMGTTKAHQLVRMEKEDLLAIFEKRAFRFDEQKPDELVQIGWEIMDRCHGSPLAAKALGSMLSTRKAVEEWRAVLTKSSICDDENGILPILKLSYDDLPSYMKQCFAFCAIFPKNYVIDVEMLILLWMANDFIPSEEAIRPETKGKQIFNELASRSFFQDVKEVPLHKDESGHSYRTICSIHDLMHDVAVSVIGKECFTIAEGHNYIEFLPNTVRHLFLCSDRPETLSDVSLKQRCQGMQTLLCIMNTSNSSLHYLSKCHSLRALRLYYHNLGGLQIRVKHLKHLRFLDLSGNCHIKSLPEEICILYNLQTLNLSGCISLGHLPKDIKNMIGLRHLYTDGCMSLKSMPPNLGHLTSLQTLTYFVVGNNSGCSSIGELRHLKLQGQLQLCHLQNVTEADVSMSSHGEGKDLTQLSFGWKDDHNEVIDLHEKVLDAFTPNSRLKILSVDSYRSSNFPTWVTNPTMMQDLIKLQLVSCTMCESLPQLWQLPSLEILHLEGLQSLQYLCSGVDNSTSSTFPKLRELILVDLKSLNGWWEVKGGPGQKLVFPLLEILSIDSCSNLENFPDAVIFGESSQFLDNKGNSPFPALKNLKLHNLKSLKAWGTQERYQPIFPQLENANIMECPELATLPEAPKLRVLVFPEDKSLMWLSIARYMATLSDVRLTIAASSSQVQCAIQQVSGTEEFSHKTSNATMELRGCYFFCMDWECFVNLQDLVINCCNELVYWPLKQLQCLVSLKRLTVYSCNNLTKSGDVLEAPLEKNQLLPCLEYIEIKDCPKLVEVLILPSSLREIYIERCGKLEFIWGQKDTENKSWYAENKDDLRSESYSILVSSADAPLATNTHLPCMESLTVISCQSLVVLLNFPLYLKEIHIWSCPELRSIRGKQDIKVESKYVERNNGMAISESSSDLSASITIEDQGTWRSKYLLPCLEYLRIAYCVSLVEVLALPSSMRTIIISECPKLEVLSGKLDKLGQLDIRFCEKLKLVESYEGSFSSLETVSIVGCENMASLPNKHSNTPCTKGIVLFRGTNIWRYLLGTVSIFIFPPNVDHDVDYGKPRT |
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| Function | Putative disease resistance protein RGA4 [UniProtKB/Swiss-Prot:Q7XA39] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g25740 | LOC_Os01g25740.1 | Chr01 | 14587007 | 14591754 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTACGAGCATGCTGCTTGGGCCTCTCATCGCCTTGGTCAATCGGCAGGTCTCCAATTACCTGTTGCAACAGTACCAAGAGCTGGATGGTATGGAGGAGCAGCTCACAATTCTGGAGCGCAAACTGCCGGCCATATTGGATGTCATCATTGATGCTGAGGAGCAAGGAACTCACCGTCCTGGGGTAAGTGCTTGGCTCAAAGCACTCAAGGCTGTTGCTTACAAAGCTAATGACATATTTGATGAGTTCAAGTATGAAGCCCTTCGTCGTGAAGCTAAGAGGAGGGGAAATCATGGAAATCTCAGCACTAGTATAGTCCTTGCTAACAATCCTCTAGTGTTCCGTTACAGGATGAGCAAGAAGCTGCGTAAAATTGTCAGTTCTATTGAGGACCTTGTTGCTGATATGAATGCCTTTGGGTTCAGGTATAGACCACAAATGCCAACCTCCAAGCAGTGGAGACAGACAGATTCAATCATCATTGACTCTGAGAATATTGTCAGCAGAGAGAAAGAGAAGCAGCATATTGTTAATTTGCTGCTTACCGATGCCAGCAACAGGAATCTCATGGTCCTTCCAATCATTGGAATGGGTGGTTTGGGCAAGACCACTTTTGCTCAGATAATTTACAACGATCCTGAGATCCAAAAGCATTTCCAGCTACGGAAGTGGGTGTGTGTCTTGGATGATTTTGATGTTACAAGCATTGCTAACAAGATCAGCATGTCAATTGAGAAAGAATGCGAAAATGCACTAGAGAAGCTCCAGCAGGAAGTCCGTGGAAAGAGGTACCTCCTTATTTTGGATGATGTATGGAATTGCGATGCCGATAAGTGGGCGAAGCTAAAATATTGCCTTCAACAATATGGTGGTGTTGGGAGTGCCATATTGATGACAACACGTGATCAAGGGGTAGCTCAGCTAATGGGAACAACTAAAGCCCATCAATTGGTAAGAATGGAAAAAGAGGATTTGCTTGCAATTTTTGAAAAAAGAGCATTCCGTTTTGATGAGCAGAAACCTGATGAGCTGGTTCAAATTGGCTGGGAGATTATGGACAGATGTCACGGGTCCCCTTTAGCTGCAAAAGCCTTGGGTTCAATGTTAAGCACACGGAAAGCTGTAGAAGAATGGAGGGCCGTATTAACCAAAAGTAGCATCTGTGATGACGAGAATGGAATTTTACCTATACTGAAGCTCAGCTATGATGATCTGCCATCATACATGAAGCAATGTTTTGCTTTTTGTGCGATCTTTCCCAAAAACTATGTGATTGATGTGGAAATGCTGATATTGCTCTGGATGGCGAATGATTTTATCCCATCTGAAGAAGCAATTCGCCCAGAAACAAAAGGCAAGCAGATTTTCAATGAGCTTGCTTCAAGGTCATTCTTTCAGGATGTCAAGGAGGTACCTTTACACAAGGATGAAAGTGGACATAGTTACCGAACTATATGTAGCATCCATGATCTCATGCATGATGTTGCTGTTTCTGTTATTGGAAAAGAATGTTTTACTATAGCTGAGGGTCACAATTACATTGAGTTTTTGCCAAATACTGTTCGTCATTTGTTCTTGTGCTCTGATCGTCCAGAAACCCTCTCAGATGTTTCACTAAAGCAGAGATGTCAAGGTATGCAAACACTTTTGTGCATTATGAATACTAGCAATTCTTCGTTACATTATTTATCAAAATGCCATTCTCTTCGAGCATTACGCCTCTATTACCATAACTTGGGTGGACTTCAGATAAGAGTGAAGCACTTGAAGCACCTCAGGTTTCTTGATCTCTCTGGCAATTGTCATATCAAGTCACTTCCTGAAGAAATATGCATTTTGTATAATCTACAAACATTAAATCTTTCGGGTTGTATATCTCTTGGTCACCTTCCTAAGGATATTAAAAACATGATTGGCCTTCGTCATCTCTATACTGATGGATGCATGTCCTTAAAATCCATGCCTCCAAACCTTGGGCATCTAACATCCCTACAGACACTAACATATTTTGTTGTGGGCAATAATTCTGGTTGTAGTAGCATTGGAGAACTAAGGCACCTCAAACTCCAAGGTCAACTCCAGCTATGTCATCTACAAAATGTAACAGAGGCAGATGTATCCATGAGCAGCCATGGGGAAGGGAAAGACCTAACCCAGCTATCTTTTGGATGGAAGGATGATCATAATGAAGTGATTGATTTACATGAGAAGGTACTAGATGCTTTTACTCCAAACAGCAGGCTTAAAATTCTATCTGTGGATTCCTACAGAAGTTCCAATTTTCCAACTTGGGTGACAAACCCCACAATGATGCAAGATCTAATCAAGCTCCAACTAGTTAGTTGCACAATGTGCGAGAGCCTTCCGCAATTGTGGCAATTGCCATCTCTTGAAATTCTTCATTTGGAAGGGCTGCAAAGTTTGCAATACCTGTGCTCGGGTGTTGACAATTCGACATCTTCAACGTTTCCTAAATTAAGGGAACTTATTTTAGTTGATCTAAAAAGTTTGAATGGTTGGTGGGAAGTAAAAGGAGGACCTGGGCAAAAGCTAGTGTTTCCCCTTCTAGAGATTCTATCAATTGATAGTTGCTCTAACTTGGAAAACTTTCCAGATGCAGTAATATTTGGTGAATCTTCTCAATTCTTAGATAATAAAGGGAACTCCCCATTTCCAGCTTTAAAAAACCTCAAGTTGCACAATCTGAAGAGTTTGAAGGCATGGGGAACACAAGAAAGATATCAACCAATATTTCCTCAACTTGAGAATGCTAATATTATGGAGTGCCCGGAGTTGGCAACTCTACCTGAAGCACCAAAGCTGAGAGTATTAGTATTTCCCGAAGATAAATCATTGATGTGGTTATCCATAGCAAGATATATGGCAACACTGTCCGATGTCAGATTAACAATTGCAGCTTCTTCCTCACAAGTACAATGTGCAATACAACAGGTCAGTGGTACAGAAGAATTTAGTCATAAAACTTCTAATGCAACTATGGAACTACGGGGATGTTACTTCTTCTGTATGGATTGGGAATGTTTTGTGAACCTGCAAGATTTAGTAATCAACTGCTGCAACGAACTCGTCTATTGGCCACTGAAACAGCTCCAATGCTTGGTATCCTTGAAAAGATTAACAGTTTATTCTTGCAATAATCTGACTAAATCTGGTGATGTTCTAGAAGCGCCATTAGAAAAAAATCAGCTACTCCCATGCTTGGAGTATATAGAAATAAAAGATTGTCCCAAATTGGTTGAGGTTCTCATCCTTCCTTCATCTCTAAGGGAAATATATATTGAGAGATGTGGTAAGCTCGAGTTCATATGGGGTCAAAAGGACACTGAAAATAAGAGTTGGTATGCTGAAAACAAAGATGATTTGAGGTCAGAATCTTATAGCATCCTAGTATCCTCTGCAGATGCACCTTTGGCAACAAATACACATTTACCTTGTATGGAGTCTCTAACAGTGATAAGTTGTCAAAGCTTAGTAGTGCTTCTCAATTTTCCCCTATATCTGAAGGAAATACACATTTGGAGTTGCCCTGAGCTTAGATCTATAAGGGGAAAGCAGGATATAAAAGTCGAAAGTAAATATGTTGAGCGTAATAACGGCATGGCTATATCAGAATCTAGCAGTGATCTCAGTGCATCTATAACTATAGAAGATCAAGGAACATGGAGAAGCAAATATCTCCTGCCATGCTTAGAATACCTAAGAATAGCATATTGTGTAAGCTTGGTAGAGGTTCTTGCTCTTCCTTCATCCATGAGAACTATAATTATTTCAGAGTGTCCTAAGCTTGAAGTCCTGTCAGGGAAGCTTGATAAACTTGGGCAACTAGATATTCGATTTTGTGAAAAGCTGAAACTAGTGGAGTCATACGAAGGATCCTTCTCATCATTGGAAACTGTCTCCATTGTCGGCTGCGAGAACATGGCATCGTTACCAAATAAACATTCAAATACTCCCTGTACAAAAGGGATTGTTCTCTTCAGAGGTACAAATATATGGAGATATCTACTCGGTACTGTCTCAATTTTCATTTTCCCTCCAAATGTGGACCATGATGTGGACTATGGAAAACCAAGAACATAA
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| Protein seq | MATSMLLGPLIALVNRQVSNYLLQQYQELDGMEEQLTILERKLPAILDVIIDAEEQGTHRPGVSAWLKALKAVAYKANDIFDEFKYEALRREAKRRGNHGNLSTSIVLANNPLVFRYRMSKKLRKIVSSIEDLVADMNAFGFRYRPQMPTSKQWRQTDSIIIDSENIVSREKEKQHIVNLLLTDASNRNLMVLPIIGMGGLGKTTFAQIIYNDPEIQKHFQLRKWVCVLDDFDVTSIANKISMSIEKECENALEKLQQEVRGKRYLLILDDVWNCDADKWAKLKYCLQQYGGVGSAILMTTRDQGVAQLMGTTKAHQLVRMEKEDLLAIFEKRAFRFDEQKPDELVQIGWEIMDRCHGSPLAAKALGSMLSTRKAVEEWRAVLTKSSICDDENGILPILKLSYDDLPSYMKQCFAFCAIFPKNYVIDVEMLILLWMANDFIPSEEAIRPETKGKQIFNELASRSFFQDVKEVPLHKDESGHSYRTICSIHDLMHDVAVSVIGKECFTIAEGHNYIEFLPNTVRHLFLCSDRPETLSDVSLKQRCQGMQTLLCIMNTSNSSLHYLSKCHSLRALRLYYHNLGGLQIRVKHLKHLRFLDLSGNCHIKSLPEEICILYNLQTLNLSGCISLGHLPKDIKNMIGLRHLYTDGCMSLKSMPPNLGHLTSLQTLTYFVVGNNSGCSSIGELRHLKLQGQLQLCHLQNVTEADVSMSSHGEGKDLTQLSFGWKDDHNEVIDLHEKVLDAFTPNSRLKILSVDSYRSSNFPTWVTNPTMMQDLIKLQLVSCTMCESLPQLWQLPSLEILHLEGLQSLQYLCSGVDNSTSSTFPKLRELILVDLKSLNGWWEVKGGPGQKLVFPLLEILSIDSCSNLENFPDAVIFGESSQFLDNKGNSPFPALKNLKLHNLKSLKAWGTQERYQPIFPQLENANIMECPELATLPEAPKLRVLVFPEDKSLMWLSIARYMATLSDVRLTIAASSSQVQCAIQQVSGTEEFSHKTSNATMELRGCYFFCMDWECFVNLQDLVINCCNELVYWPLKQLQCLVSLKRLTVYSCNNLTKSGDVLEAPLEKNQLLPCLEYIEIKDCPKLVEVLILPSSLREIYIERCGKLEFIWGQKDTENKSWYAENKDDLRSESYSILVSSADAPLATNTHLPCMESLTVISCQSLVVLLNFPLYLKEIHIWSCPELRSIRGKQDIKVESKYVERNNGMAISESSSDLSASITIEDQGTWRSKYLLPCLEYLRIAYCVSLVEVLALPSSMRTIIISECPKLEVLSGKLDKLGQLDIRFCEKLKLVESYEGSFSSLETVSIVGCENMASLPNKHSNTPCTKGIVLFRGTNIWRYLLGTVSIFIFPPNVDHDVDYGKPRT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.751765 | 1.423245 | 0.478644 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359600 | RBH | 2.510630 | 2.269976 | 2.048501 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25720 | SBH | 1.926517 | 1.888892 | 1.677886 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0359600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016750 | SBH | 2.686067 | 8.307322 | 7.161385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016430 | SBH | 0.186836 | 2.266571 | 1.176480 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016640 | SBH | 3.956863 | 7.882003 | 12.720966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016130 | SBH | 0.234253 | 0.193804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016170 | RBH | 7.443349 | 5.452519 | 8.691284 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0246300 | RBH | 10.1699405 | 25.732087 | 2.949927 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016220 | SBH | 0.074638 | 0.082488 | 0.379317 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0241600 | RBH | 2.9028165 | 11.698604 | 0.5912565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016110 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016110 | RBH | 0.775541 | 3.832317 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016330 | RBH | 5.647802 | 17.338108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016170 | RBH | 0.820173 | 0.367919 | 0.316204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015960 | SBH | 0.030707 | 0.714120 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016390 | RBH | 0.859529 | 0.387296 | 1.158092 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016190 | SBH | 0.990932 | 11.795040 | 1.633597 |
