Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g15840 | OGI:01027800 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:8921590-8925372 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAACTAGAATTCTGAATCATTGCTTCAATTGCTTTGTTGGCCTTAATCAGTTCCCCTTTTAAGCAAAGTGAAGCGATTGCTGGATAATATGTGTCAAAGTCATCATGGAAAGAATTCCGTAGCAAATTATCATAGTAAATATCAGTATCATCACTTGGTGTGCATAAATTCTCAGCTCCATCTATTGTGGGTTGAACTGTGCCTTCAGAAATTCCATGAAGACAGTTGCTAGAAACACCATAAGTAGTTGAACATAAAACTTGTCCAGGATTATCCATATTACGATCATAAGCCACAGGTGTCTCTACGTTCTTCAGGTGACTAAGCGTGCTACAATTATTAGAATCTGAAGAGGATACAGACATGAGCGCCACTTCATTTAGGATAGTCACGACCTCATCAATCCTCCCTTGCTCACAGGCAGAAAATAGAAGGCCAACAAAAGATTCTGCTTGGATCTTATCCCCAACACTGTTTATGAACTCTGCAACTTCTTTGCACTGAAACATCTCTCTCAAGATGCTCCTAGATTCTTCCATTCTTCCTTTTGCATAGAGTCCTTTGACCAGGCTCATGAAGCCAACAAAATCTGGAACCATCTCCTTATGATAGTATTCACTAAAGAAGCCTAATGCTGATTCAATGTCACCTTTTAGGCAGTGTCCATTAATTATTGCACCAATTGTAATAGCGTCTGGGAATAGAAATATTTCCTCAAAATGTGATATAAGCTCCAGTGCTTTCTCAGTTAACCCGTAGTTACAATAACCACTTATTAGCAAGTTGTAAACACGTGTAGTGGGTTTGATACCCTTGGTGGACATTTTCTGAAACAACTCATGAGCGTCATCCAAAAAACCTTCTCTGCACAAAGCAGCTATAAGTATAGAGTAAGTTACCAGTGTCGGAAGCACTTCACTGCTTTCTAGGTAGTCAAATAGCCGGAATGCTTCAGTAAGGCATCCCTGCTGGCACAAACCATTCAGAACAGAGTTATGGATGACAATGTTTGGCTGAATCCCTTCTTCTTTCATGCTTTCGCATAGGTCTAATGCCTTCTCAAGATAACCACTTTTACAAAGGCCTTCCACTAATATGGAGTACATGGCAAGATCCACTGAATAACCATTTTGTTCAGCTTCCTTCAAAAAGTTGCATGCATCCAGAATTCTACCTTCCCTCTTTAGTGTGTATACAGCTTCTCTTAGAACACTGACAGGAACACGGCCATTGTTCATGTAATTGGAAAACCCAATAGCTTCACCAACACTGTTCTTGCTGAGGTGGCAAGATAGCATATTAATCATTCTAGGTTCATCCAGGCCATGAATTTTAATGAACTGACTTAATAATGGCTGGATGGTCTGTTCATGACCATTTCGGAGCAAGCATTTGAGTAGCCTGTAGCATGTTTTGCTAGTTACAGTAAATGATTTCATTCTTAGAAGCTTGTAAACATCCAATGCTCCTTGGTAGCAATCTCTTGTGCTTAAGAAAGCGGAAGCATAATTACATAGAGATGAAAATAAGTCAATTTCAGATCCATCCACCTTAAGAATGAAATTCAGCACGCCATGTTCACCGCCTTCTTTAAAGTGTGTATGGATCAACTTCTTGTAAGTACAGGAATCAGGCCTTAAATTTCTTTGGATAAGATCATTAAAAATCTGCTCAGCCATGTTTACCTTTCCTCCATTACACAATGCTATAATCAGGCAATTGTGTACTATTGTAGAGGAGAACAAGATGTCTTCTTTGTAATCATCAAACAACTGCAGTGCCCTGTCAGTTTCTCCAAGTTTACACATCATGTCAATAACTGTATGATATGTGACAATATTAGGCCTTAATCTCATCTCGGGCATTCTAAGAAACAAGCTGCAGGCATCATCCACCTTCTTAATCATAAATAATGCTTTGATAAGTACATTGCATGTGACAACATCAATTGTAACACCGCTGCTCTCAAGCCTACCTTTTATTGCCATTACACCAGTTGCATCTTCTACCTTAATGTGACCATGTAACAGCGTGCTATATGTGAAGTTATCAGCAGCAATACCTTCATATATTTCAACAGCCTTCTTGGTGTGACCAACCTTACATAGACCATTTATTACTGAATTGTATGTTACGATTCCAATCTTTATCCCCTTTTTATCCATCTCTTCAAGCAAAGAGAAAGCCCTATCCAAATATCCCTTTTTGCACAAATTGTCAATCAAAATTGAGTAAACATATTCATCCACCACCACTCCTGTCTGTTCCAGTTTCCTCACTATAGAAAAAGCATCATCCAACCTGTTTCTCTTGCAGAAACCACCAATCAATGATGTATAAGTGATCAAATTCGGCTTAGCATCCCTTCGGTTCATCTCATCCAAGAATCCCATCACTTTTTCCACACTACGTTCTCTGCAAAGTCCATCAATAACAGTAGTATAACTAACTACATCAGCTGCAATGCCCTTATCTAACATCACCCGATGCTCACGGAGCCCTTTCATCAATAACCCGCTACTCATGTATCCATGAACCAAGCTGCCATATAAAACAGCATCACCAACCAACCCCTTCCCTTCCATCTCCCTTACCAATTGTGCTGCCTCAGTAGTTCTCCCTACACGGCCAAGCACATCGACAAAAGCGGTTAATGTGATCAAGCCTGGCTCAAATCCATTGAACTCTCTCCTCACCCTCCTATAGAATTCCAGCCCATCCCCAGCCTTCCCGACCTTGGAGAAGCCTGAAATGATCACGCTGCAAACACGATCATCCACCTGACACCCCGCTGCAGCCATTACGTCGAACACCTTGAGCGCGGTCTCCATGTCACCGCGGGCACACAGCATCGTCAGGGCCACACGATACGTGGACGGAGAAAACACGAGCCCGCACTCCTCTACGCCGGCGGAGAGCACCTCCAGCGCGCGGCGAGCATCGCCGCGCACCGCGCAGGCCCGGCGGAGCAGCGCGTCCCAGAGGCGGCGCGCGGAGGAGGTTGCCGGGCCGGCGAGCGCGAGGCGCGCTGCCGCGTCGCGCGGACGGGAAGAATCTAGAAGCGCCGAGGCGACCAGGAGGTGGGTGCGCGCGGTGGGGCGCACGGAGTTGGCGACCGCCTGCGAGGCGAGCGCGCCGACGAGGCGGTGCCTCCGCCGGCGGAGGAGCGCCGCCAGTAGGATGTCCACGCGGCGCGGCGTGACGGCCCTTCCGAGCTTGACCAGCGACGGGAGCGGCGGTGGTGGTCGGGGCTCGCCGCCGGCGAGCGGCATGGCGGAGGGTGGTGGTGGTGGCGCCGCCGCCGCGTGGGAAGCGAAGCGCAAACGTTCGAAACGTTGGAAGCCGATGGCGTGGGCCGAATTTGGATACGAGCTTGTTTGGATCTGGGCCTGAATAGATATGGGCTTGTATTGGTTCTGGGCCTGTTTGGATATGGGCTTATTTAGGTGAGGCGTTTCGAGTCGGAAGCGAGAAGGGGAGAAGAGGAAGATGCAGCAAGCGCAGGCGTCGGCGGTGGTGGCCGCGCCGGTGGCGGCGGCGGCGGCGGCGGCGGCGGGGGCGACGGGGCACCAGCACGAGGGGGCGAGGGGTGACGCGCCGCCGAAGCAGGTGGCGCAGGCGATGGAGCGGCTGGGGCGGGCGGGGCGGCTCATCGCGGACATCCGGCTGGGCGCGGACCGTCTGCTCGAGGCGCTCTTCGTCGCCGGCGACGCGCCCCCGCACAGCGCCCCGCAGCACGTTGAGAAGACCGCGCTCGCCGTCGCCCAGGAGGAGGCCGCCAT
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| CDS seq | ATGGCGGCCTCCTCCTGGGCGACGGCGAGCGCGGTCTTCTCAACGTGCTGCGGGGCGCTGTGCGGGGGCGCGTCGCCGGCGACGAAGAGCGCCTCGAGCAGACGGTCCGCGCCCAGCCGGATGTCCGCGATGAGCCGCCCCGCCCGCCCCAGCCGCTCCATCGCCTGCGCCACCTGCTTCGGCGGCGCGTCACCCCTCGCCCCCTCGTGCTGGTGCCCCGTCGCCCCCGCCGCCGCCGCCGCCGCCGCCGCCACCGGCGCGGCCACCACCGCCGACGCCTGCGCTTGCTGCATCTTCCTCTTCTCCCCTTCTCGCTTCCGACTCGAAACGCCTCACCTAAATAAGCCCATATCCAAACAGGCCCAGAACCAATACAAGCCCATATCTATTCAGGCCCAGATCCAAACAAGCTCGTATCCAAATTCGGCCCACGCCATCGGCTTCCAACGTTTCGAACGTTTGCGCTTCGCTTCCCACGCGGCGGCGGCGCCACCACCACCACCCTCCGCCATGCCGCTCGCCGGCGGCGAGCCCCGACCACCACCGCCGCTCCCGTCGCTGGTCAAGCTCGGAAGGGCCGTCACGCCGCGCCGCGTGGACATCCTACTGGCGGCGCTCCTCCGCCGGCGGAGGCACCGCCTCGTCGGCGCGCTCGCCTCGCAGGCGGTCGCCAACTCCGTGCGCCCCACCGCGCGCACCCACCTCCTGGTCGCCTCGGCGCTTCTAGATTCTTCCCGTCCGCGCGACGCGGCAGCGCGCCTCGCGCTCGCCGGCCCGGCAACCTCCTCCGCGCGCCGCCTCTGGGACGCGCTGCTCCGCCGGGCCTGCGCGGTGCGCGGCGATGCTCGCCGCGCGCTGGAGGTGCTCTCCGCCGGCGTAGAGGAGTGCGGGCTCGTGTTTTCTCCGTCCACGTATCGTGTGGCCCTGACGATGCTGTGTGCCCGCGGTGACATGGAGACCGCGCTCAAGGTGTTCGACGTAATGGCTGCAGCGGGGTGTCAGGTGGATGATCGTGTTTGCAGCGTGATCATTTCAGGCTTCTCCAAGGTCGGGAAGGCTGGGGATGGGCTGGAATTCTATAGGAGGGTGAGGAGAGAGTTCAATGGATTTGAGCCAGGCTTGATCACATTAACCGCTTTTGTCGATGTGCTTGGCCGTGTAGGGAGAACTACTGAGGCAGCACAATTGGTAAGGGAGATGGAAGGGAAGGGGTTGGTTGGTGATGCTGTTTTATATGGCAGCTTGGTTCATGGATACATGAGTAGCGGGTTATTGATGAAAGGGCTCCGTGAGCATCGGGTGATGTTAGATAAGGGCATTGCAGCTGATGTAGTTAGTTATACTACTGTTATTGATGGACTTTGCAGAGAACGTAGTGTGGAAAAAGTGATGGGATTCTTGGATGAGATGAACCGAAGGGATGCTAAGCCGAATTTGATCACTTATACATCATTGATTGGTGGTTTCTGCAAGAGAAACAGGTTGGATGATGCTTTTTCTATAGTGAGGAAACTGGAACAGACAGGAGTGGTGGTGGATGAATATGTTTACTCAATTTTGATTGACAATTTGTGCAAAAAGGGATATTTGGATAGGGCTTTCTCTTTGCTTGAAGAGATGGATAAAAAGGGGATAAAGATTGGAATCGTAACATACAATTCAGTAATAAATGGTCTATGTAAGGTTGGTCACACCAAGAAGGCTGTTGAAATATATGAAGGTATTGCTGCTGATAACTTCACATATAGCACGCTGTTACATGGTCACATTAAGGTAGAAGATGCAACTGGTGTAATGGCAATAAAAGGTAGGCTTGAGAGCAGCGGTGTTACAATTGATGTTGTCACATGCAATGTACTTATCAAAGCATTATTTATGATTAAGAAGGTGGATGATGCCTGCAGCTTGTTTCTTAGAATGCCCGAGATGAGATTAAGGCCTAATATTGTCACATATCATACAGTTATTGACATGATGTGTAAACTTGGAGAAACTGACAGGGCACTGCAGTTGTTTGATGATTACAAAGAAGACATCTTGTTCTCCTCTACAATAGTACACAATTGCCTGATTATAGCATTGTGTAATGGAGGAAAGGTAAACATGGCTGAGCAGATTTTTAATGATCTTATCCAAAGAAATTTAAGGCCTGATTCCTGTACTTACAAGAAGTTGATCCATACACACTTTAAAGAAGGCGGTGAACATGGCGTGCTGAATTTCATTCTTAAGGTGGATGGATCTGAAATTGACTTATTTTCATCTCTATGTAATTATGCTTCCGCTTTCTTAAGCACAAGAGATTGCTACCAAGGAGCATTGGATGTTTACAAGCTTCTAAGAATGAAATCATTTACTGTAACTAGCAAAACATGCTACAGGCTACTCAAATGCTTGCTCCGAAATGGTCATGAACAGACCATCCAGCCATTATTAAGTCAGTTCATTAAAATTCATGGCCTGGATGAACCTAGAATGATTAATATGCTATCTTGCCACCTCAGCAAGAACAGTGTTGGTGAAGCTATTGGGTTTTCCAATTACATGAACAATGGCCGTGTTCCTGTCAGTGTTCTAAGAGAAGCTGTATACACACTAAAGAGGGAAGGTAGAATTCTGGATGCATGCAACTTTTTGAAGGAAGCTGAACAAAATGGTTATTCAGTGGATCTTGCCATGTACTCCATATTAGTGGAAGGCCTTTGTAAAAGTGGTTATCTTGAGAAGGCATTAGACCTATGCGAAAGCATGAAAGAAGAAGGGATTCAGCCAAACATTGTCATCCATAACTCTGTTCTGAATGGTTTGTGCCAGCAGGGATGCCTTACTGAAGCATTCCGGCTATTTGACTACCTAGAAAGCAGTGAAGTGCTTCCGACACTGGTAACTTACTCTATACTTATAGCTGCTTTGTGCAGAGAAGGTTTTTTGGATGACGCTCATGAGTTGTTTCAGAAAATGTCCACCAAGGGTATCAAACCCACTACACGTGTTTACAACTTGCTAATAAGTGGTTATTGTAACTACGGGTTAACTGAGAAAGCACTGGAGCTTATATCACATTTTGAGGAAATATTTCTATTCCCAGACGCTATTACAATTGGTGCAATAATTAATGGACACTGCCTAAAAGGTGACATTGAATCAGCATTAGGCTTCTTTAGTGAATACTATCATAAGGAGATGGTTCCAGATTTTGTTGGCTTCATGAGCCTGGTCAAAGGACTCTATGCAAAAGGAAGAATGGAAGAATCTAGGAGCATCTTGAGAGAGATGTTTCAGTGCAAAGAAGTTGCAGAGTTCATAAACAGTGTTGGGGATAAGATCCAAGCAGAATCTTTTGTTGGCCTTCTATTTTCTGCCTGTGAGCAAGGGAGGATTGATGAGGTCGTGACTATCCTAAATGAAGTGGCGCTCATGTCTGTATCCTCTTCAGATTCTAATAATTGTAGCACGCTTAGTCACCTGAAGAACGTAGAGACACCTGTGGCTTATGATCGTAATATGGATAATCCTGGACAAGTTTTATGTTCAACTACTTATGGTGTTTCTAGCAACTGTCTTCATGGAATTTCTGAAGGCACAGTTCAACCCACAATAGATGGAGCTGAGAATTTATGCACACCAAGTGATGATACTGATATTTACTATGATAATTTGCTACGGAATTCTTTCCATGATGACTTTGACACATATTATCCAGCAATCGCTTCACTTTGCTTAAAAGGGGAACTGATTAAGGCCAACAAAGCAATTGAAGCAATGATTCAGAATTCTAGTTGA
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| Protein seq | MAASSWATASAVFSTCCGALCGGASPATKSASSRRSAPSRMSAMSRPARPSRSIACATCFGGASPLAPSCWCPVAPAAAAAAAATGAATTADACACCIFLFSPSRFRLETPHLNKPISKQAQNQYKPISIQAQIQTSSYPNSAHAIGFQRFERLRFASHAAAAPPPPPSAMPLAGGEPRPPPPLPSLVKLGRAVTPRRVDILLAALLRRRRHRLVGALASQAVANSVRPTARTHLLVASALLDSSRPRDAAARLALAGPATSSARRLWDALLRRACAVRGDARRALEVLSAGVEECGLVFSPSTYRVALTMLCARGDMETALKVFDVMAAAGCQVDDRVCSVIISGFSKVGKAGDGLEFYRRVRREFNGFEPGLITLTAFVDVLGRVGRTTEAAQLVREMEGKGLVGDAVLYGSLVHGYMSSGLLMKGLREHRVMLDKGIAADVVSYTTVIDGLCRERSVEKVMGFLDEMNRRDAKPNLITYTSLIGGFCKRNRLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGYLDRAFSLLEEMDKKGIKIGIVTYNSVINGLCKVGHTKKAVEIYEGIAADNFTYSTLLHGHIKVEDATGVMAIKGRLESSGVTIDVVTCNVLIKALFMIKKVDDACSLFLRMPEMRLRPNIVTYHTVIDMMCKLGETDRALQLFDDYKEDILFSSTIVHNCLIIALCNGGKVNMAEQIFNDLIQRNLRPDSCTYKKLIHTHFKEGGEHGVLNFILKVDGSEIDLFSSLCNYASAFLSTRDCYQGALDVYKLLRMKSFTVTSKTCYRLLKCLLRNGHEQTIQPLLSQFIKIHGLDEPRMINMLSCHLSKNSVGEAIGFSNYMNNGRVPVSVLREAVYTLKREGRILDACNFLKEAEQNGYSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEGIQPNIVIHNSVLNGLCQQGCLTEAFRLFDYLESSEVLPTLVTYSILIAALCREGFLDDAHELFQKMSTKGIKPTTRVYNLLISGYCNYGLTEKALELISHFEEIFLFPDAITIGAIINGHCLKGDIESALGFFSEYYHKEMVPDFVGFMSLVKGLYAKGRMEESRSILREMFQCKEVAEFINSVGDKIQAESFVGLLFSACEQGRIDEVVTILNEVALMSVSSSDSNNCSTLSHLKNVETPVAYDRNMDNPGQVLCSTTYGVSSNCLHGISEGTVQPTIDGAENLCTPSDDTDIYYDNLLRNSFHDDFDTYYPAIASLCLKGELIKANKAIEAMIQNSS |
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| Function | Pentatricopeptide repeat-containing protein At5g57250, mitochondrial [UniProtKB/Swiss-Prot:Q9LVD3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g15840 | LOC_Os01g15840.1 | Chr01 | 8921590 | 8925372 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCGGCCTCCTCCTGGGCGACGGCGAGCGCGGTCTTCTCAACGTGCTGCGGGGCGCTGTGCGGGGGCGCGTCGCCGGCGACGAAGAGCGCCTCGAGCAGACGGTCCGCGCCCAGCCGGATGTCCGCGATGAGCCGCCCCGCCCGCCCCAGCCGCTCCATCGCCTGCGCCACCTGCTTCGGCGGCGCGTCACCCCTCGCCCCCTCGTGCTGGTGCCCCGTCGCCCCCGCCGCCGCCGCCGCCGCCGCCGCCACCGGCGCGGCCACCACCGCCGACGCCTGCGCTTGCTGCATCTTCCTCTTCTCCCCTTCTCGCTTCCGACTCGAAACGCCTCACCTAAATAAGCCCATATCCAAACAGGCCCAGAACCAATACAAGCCCATATCTATTCAGGCCCAGATCCAAACAAGCTCGTATCCAAATTCGGCCCACGCCATCGGCTTCCAACGTTTCGAACGTTTGCGCTTCGCTTCCCACGCGGCGGCGGCGCCACCACCACCACCCTCCGCCATGCCGCTCGCCGGCGGCGAGCCCCGACCACCACCGCCGCTCCCGTCGCTGGTCAAGCTCGGAAGGGCCGTCACGCCGCGCCGCGTGGACATCCTACTGGCGGCGCTCCTCCGCCGGCGGAGGCACCGCCTCGTCGGCGCGCTCGCCTCGCAGGCGGTCGCCAACTCCGTGCGCCCCACCGCGCGCACCCACCTCCTGGTCGCCTCGGCGCTTCTAGATTCTTCCCGTCCGCGCGACGCGGCAGCGCGCCTCGCGCTCGCCGGCCCGGCAACCTCCTCCGCGCGCCGCCTCTGGGACGCGCTGCTCCGCCGGGCCTGCGCGGTGCGCGGCGATGCTCGCCGCGCGCTGGAGGTGCTCTCCGCCGGCGTAGAGGAGTGCGGGCTCGTGTTTTCTCCGTCCACGTATCGTGTGGCCCTGACGATGCTGTGTGCCCGCGGTGACATGGAGACCGCGCTCAAGGTGTTCGACGTAATGGCTGCAGCGGGGTGTCAGGTGGATGATCGTGTTTGCAGCGTGATCATTTCAGGCTTCTCCAAGGTCGGGAAGGCTGGGGATGGGCTGGAATTCTATAGGAGGGTGAGGAGAGAGTTCAATGGATTTGAGCCAGGCTTGATCACATTAACCGCTTTTGTCGATGTGCTTGGCCGTGTAGGGAGAACTACTGAGGCAGCACAATTGGTAAGGGAGATGGAAGGGAAGGGGTTGGTTGGTGATGCTGTTTTATATGGCAGCTTGGTTCATGGATACATGAGTAGCGGGTTATTGATGAAAGGGCTCCGTGAGCATCGGGTGATGTTAGATAAGGGCATTGCAGCTGATGTAGTTAGTTATACTACTGTTATTGATGGACTTTGCAGAGAACGTAGTGTGGAAAAAGTGATGGGATTCTTGGATGAGATGAACCGAAGGGATGCTAAGCCGAATTTGATCACTTATACATCATTGATTGGTGGTTTCTGCAAGAGAAACAGGTTGGATGATGCTTTTTCTATAGTGAGGAAACTGGAACAGACAGGAGTGGTGGTGGATGAATATGTTTACTCAATTTTGATTGACAATTTGTGCAAAAAGGGATATTTGGATAGGGCTTTCTCTTTGCTTGAAGAGATGGATAAAAAGGGGATAAAGATTGGAATCGTAACATACAATTCAGTAATAAATGGTCTATGTAAGGTTGGTCACACCAAGAAGGCTGTTGAAATATATGAAGGTATTGCTGCTGATAACTTCACATATAGCACGCTGTTACATGGTCACATTAAGGTAGAAGATGCAACTGGTGTAATGGCAATAAAAGGTAGGCTTGAGAGCAGCGGTGTTACAATTGATGTTGTCACATGCAATGTACTTATCAAAGCATTATTTATGATTAAGAAGGTGGATGATGCCTGCAGCTTGTTTCTTAGAATGCCCGAGATGAGATTAAGGCCTAATATTGTCACATATCATACAGTTATTGACATGATGTGTAAACTTGGAGAAACTGACAGGGCACTGCAGTTGTTTGATGATTACAAAGAAGACATCTTGTTCTCCTCTACAATAGTACACAATTGCCTGATTATAGCATTGTGTAATGGAGGAAAGGTAAACATGGCTGAGCAGATTTTTAATGATCTTATCCAAAGAAATTTAAGGCCTGATTCCTGTACTTACAAGAAGTTGATCCATACACACTTTAAAGAAGGCGGTGAACATGGCGTGCTGAATTTCATTCTTAAGGTGGATGGATCTGAAATTGACTTATTTTCATCTCTATGTAATTATGCTTCCGCTTTCTTAAGCACAAGAGATTGCTACCAAGGAGCATTGGATGTTTACAAGCTTCTAAGAATGAAATCATTTACTGTAACTAGCAAAACATGCTACAGGCTACTCAAATGCTTGCTCCGAAATGGTCATGAACAGACCATCCAGCCATTATTAAGTCAGTTCATTAAAATTCATGGCCTGGATGAACCTAGAATGATTAATATGCTATCTTGCCACCTCAGCAAGAACAGTGTTGGTGAAGCTATTGGGTTTTCCAATTACATGAACAATGGCCGTGTTCCTGTCAGTGTTCTAAGAGAAGCTGTATACACACTAAAGAGGGAAGGTAGAATTCTGGATGCATGCAACTTTTTGAAGGAAGCTGAACAAAATGGTTATTCAGTGGATCTTGCCATGTACTCCATATTAGTGGAAGGCCTTTGTAAAAGTGGTTATCTTGAGAAGGCATTAGACCTATGCGAAAGCATGAAAGAAGAAGGGATTCAGCCAAACATTGTCATCCATAACTCTGTTCTGAATGGTTTGTGCCAGCAGGGATGCCTTACTGAAGCATTCCGGCTATTTGACTACCTAGAAAGCAGTGAAGTGCTTCCGACACTGGTAACTTACTCTATACTTATAGCTGCTTTGTGCAGAGAAGGTTTTTTGGATGACGCTCATGAGTTGTTTCAGAAAATGTCCACCAAGGGTATCAAACCCACTACACGTGTTTACAACTTGCTAATAAGTGGTTATTGTAACTACGGGTTAACTGAGAAAGCACTGGAGCTTATATCACATTTTGAGGAAATATTTCTATTCCCAGACGCTATTACAATTGGTGCAATAATTAATGGACACTGCCTAAAAGGTGACATTGAATCAGCATTAGGCTTCTTTAGTGAATACTATCATAAGGAGATGGTTCCAGATTTTGTTGGCTTCATGAGCCTGGTCAAAGGACTCTATGCAAAAGGAAGAATGGAAGAATCTAGGAGCATCTTGAGAGAGATGTTTCAGTGCAAAGAAGTTGCAGAGTTCATAAACAGTGTTGGGGATAAGATCCAAGCAGAATCTTTTGTTGGCCTTCTATTTTCTGCCTGTGAGCAAGGGAGGATTGATGAGGTCGTGACTATCCTAAATGAAGTGGCGCTCATGTCTGTATCCTCTTCAGATTCTAATAATTGTAGCACGCTTAGTCACCTGAAGAACGTAGAGACACCTGTGGCTTATGATCGTAATATGGATAATCCTGGACAAGTTTTATGTTCAACTACTTATGGTGTTTCTAGCAACTGTCTTCATGGAATTTCTGAAGGCACAGTTCAACCCACAATAGATGGAGCTGAGAATTTATGCACACCAAGTGATGATACTGATATTTACTATGATAATTTGCTACGGAATTCTTTCCATGATGACTTTGACACATATTATCCAGCAATCGCTTCACTTTGCTTAAAAGGGGAACTGATTAAGGCCAACAAAGCAATTGAAGCAATGATTCAGAATTCTAGTTGA
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| Protein seq | MAASSWATASAVFSTCCGALCGGASPATKSASSRRSAPSRMSAMSRPARPSRSIACATCFGGASPLAPSCWCPVAPAAAAAAAATGAATTADACACCIFLFSPSRFRLETPHLNKPISKQAQNQYKPISIQAQIQTSSYPNSAHAIGFQRFERLRFASHAAAAPPPPPSAMPLAGGEPRPPPPLPSLVKLGRAVTPRRVDILLAALLRRRRHRLVGALASQAVANSVRPTARTHLLVASALLDSSRPRDAAARLALAGPATSSARRLWDALLRRACAVRGDARRALEVLSAGVEECGLVFSPSTYRVALTMLCARGDMETALKVFDVMAAAGCQVDDRVCSVIISGFSKVGKAGDGLEFYRRVRREFNGFEPGLITLTAFVDVLGRVGRTTEAAQLVREMEGKGLVGDAVLYGSLVHGYMSSGLLMKGLREHRVMLDKGIAADVVSYTTVIDGLCRERSVEKVMGFLDEMNRRDAKPNLITYTSLIGGFCKRNRLDDAFSIVRKLEQTGVVVDEYVYSILIDNLCKKGYLDRAFSLLEEMDKKGIKIGIVTYNSVINGLCKVGHTKKAVEIYEGIAADNFTYSTLLHGHIKVEDATGVMAIKGRLESSGVTIDVVTCNVLIKALFMIKKVDDACSLFLRMPEMRLRPNIVTYHTVIDMMCKLGETDRALQLFDDYKEDILFSSTIVHNCLIIALCNGGKVNMAEQIFNDLIQRNLRPDSCTYKKLIHTHFKEGGEHGVLNFILKVDGSEIDLFSSLCNYASAFLSTRDCYQGALDVYKLLRMKSFTVTSKTCYRLLKCLLRNGHEQTIQPLLSQFIKIHGLDEPRMINMLSCHLSKNSVGEAIGFSNYMNNGRVPVSVLREAVYTLKREGRILDACNFLKEAEQNGYSVDLAMYSILVEGLCKSGYLEKALDLCESMKEEGIQPNIVIHNSVLNGLCQQGCLTEAFRLFDYLESSEVLPTLVTYSILIAALCREGFLDDAHELFQKMSTKGIKPTTRVYNLLISGYCNYGLTEKALELISHFEEIFLFPDAITIGAIINGHCLKGDIESALGFFSEYYHKEMVPDFVGFMSLVKGLYAKGRMEESRSILREMFQCKEVAEFINSVGDKIQAESFVGLLFSACEQGRIDEVVTILNEVALMSVSSSDSNNCSTLSHLKNVETPVAYDRNMDNPGQVLCSTTYGVSSNCLHGISEGTVQPTIDGAENLCTPSDDTDIYYDNLLRNSFHDDFDTYYPAIASLCLKGELIKANKAIEAMIQNSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.393457 | 0.133543 | 0.243627 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0263400 | RBH | 0.672479 | 0.229492 | 1.093891 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0263400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011480 | RBH | 0.150654 | 0.000000 | 0.335294 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0011130 | RBH | 0.067917 | 0.286158 | 0.758182 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011470 | RBH | 0.000000 | 0.000000 | 1.400155 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010980 | RBH | 0.056428 | 0.031185 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0011030 | RBH | 0.690887 | 0.912795 | 0.845249 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0149400 | RBH | 0.647968 | 8.119924 | 5.3946275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0011010 | RBH | 0.058491 | 0.042501 | 0.097969 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0147200 | RBH | 0.685068 | 2.093769 | 3.7672715 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0011020 | RBH | 0.055946 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0011050 | RBH | 0.096022 | 1.600970 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010990 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0011140 | RBH | 0.048841 | 0.126302 | 0.121997 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010980 | RBH | 0.062415 | 0.644309 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G011130 | RBH | 0.219921 | 0.470192 | 0.187896 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010990 | RBH | 0.502473 | 1.046616 | 0.621379 |
