Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g14870 | OGI:01026160 | 8/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:8334519-8338574 | ||||||||
| Gene Symbol | C3H3, OsC3H3 | ||||||||||
| DNA seq | AGAAGAGTTGTCGAGAGAGAGAAGAGAAGCCGCGGAAGGGGGAAAAAAGGGAGGCGGCGGAAGGGGATCGGAGATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGCCGCCCGCAAGCGCCACCTCGACGGCGCCCAGCACCACCGCGCCCGCGCCCTCTGGTACGACGCCGTCCGCCGCCAAGGTTGCCCCCCCACTCCTCCTCCTCCTCCTCCCCTTCGCTCTTCTCGCTCCGACACCTTCTGACCCTTCTCCCCCCTCCCGCAGAGCTTCACGGCGGCGGCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCGCCGCCATCGGCGTCTGCCAACACTTCGTCCGTACGGTGTGTACTTGCGATTCTGCCGATCTTATTACATCTGTTACTACTCAACGAGGATGACTAACATTTCTGCAATTGACCCCATTTTTTGGTGTTTTTTTAGGGGACGTGCAAGTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGTGACTGTACTTCTTGTGCTCTGTTTTGTTTTTAAATTTTTGAGTAAATTTTAGAAAACTGCAACTATAGTGACAAAACTATCAGTTTGCTGCAATAATAGCGTTGGAAATAATCACAAAACTACAGCTTTTACGTGATATGCTGCTATAGTTGTTACCTATGTGTACCGTAGCAGTATATCATGTAAAAGTTGGAGTTTTGAGATAATTTCCTACGCTATTATTTCTGCAAACTGAAATATATCAGTAATGTTGCAGCAAACTGATAGTTTTGTCACTATAGTTGCAGTTTTCTGAAATTTACTCTAAAGTTTTTGGTATATTTCCGCAAAGGTGATTTTTAGTAAGATTCTTCAGTGAAAGTCTGCTTGATGTTGGGATATAATTGTTCGTTATATTCTACAACTCATTGGATTGCCTTTGCCCCCATTGGGTGTTGATCTGAACTATATAGACTTCATTACGTACTGGCGCGGTACTGCCATTAGGTCTTCACAGATTCATATACAGTTGAATTCATCTTGATGTTGGCGCGCAAAGCGAAGACGCTAGCTTGATGTTAACTTGGTGCATCGAATTGCCGTGCAACTTAGTTATTTTAGAGGATCATCTGTATTTTGCCCTTGTTTCGGAATTCTACCAATACCTTTTTCTTCCTCCAGTTTTATCTAAGATGAAGTAATTAGCTGCCTGTAAGCTTGTAACCAAGTCTGTTGGATTATATTTTTGCACCATTGTAGAGCACTGCTCAATTCTCTCAGCCCCGTGTAGTGTACACAAAACAAAGCAGGGTAGTATATTTGTATGTGTGTGCAATTGTGAATTGCAAATACACAAATGCAACTTTCATGAAATTAGTAGCCTATAGTACTATCCGCATATTTGAGTTTCCTTATCAGTTGTTACTACTATTATGAGTGCACGACAAATTTACGACAATCACTGTTCCTATTTCTATAAGATAATTCTTAGAACACGTTGTTCTAAATTAGATTAAAAACTGTGGATAGGACTTAAGTTCTGACTTGCCCTTTTATTATCCAGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGTGATCTGATTATGGCACACTCAGCAAAAAATAATATTGTTACAGCTAGCTGGAGTAGTGCAGAAAATTGAATGGCTCTCACTGCTTCCTCCCAACTGATGATTGGATTTTATTCCAACACAACTTCTCGTTTTCTGTTCTAATTAATTTAGGATCTGGTTTTTAGTTCTTACATAACTTTCTCCATTCAGCTTGGATTAAATCAATGAATGGAGACATTTGGTAGTTATTATATGTTAGTCAAGCACATCATTATTAAAATATGAACTTAATGTCTTGACTCTCGACCATAGCTGCCGCAACGAGTCGTAAAATGGACTCTATATATTACCTTTACTCTCGCCTTTTTTTTGTTGCAATATAGTAAGGTCCAACGTGCATTCATAGCATATTTTAGGTAGGTTGCTTTTGTAGCATGCCATGCCACAGCTATTGGACCTGTGAAACATTATTGTATAGATAATGTAAAATGGGGATAGAAGTGAATGAAAAAAATGGTTTTCTCTATTTATTCAGCATGTTTTCCATCCAGTCACCTGTCATGCCATGAATAGGACACTTTGCACCTGCCAGGTTGCCATGCAATCATTGGATGTACTCCTTTATCCATGTAGGTCCAATGGTTGGTGCTACTAATGTGGTGCGATGTTTCTAGGCAATTTGATTGCATCTCTGTCTGTCGGTTGGTCTCTTTTATTGATGAATGAGGGGCTAGATACTATGACATTTAAATAGTTTGGCTTACCCTAGAATCTGTGGTCAAACTACTGAATTCATGAGAAGCGTGCTCAAAAGCCTTGCCCTAAGCAATGAATTCTGATGCTCTGGGATGCAAAAGCTGCAAGGGTAGCATATGTTTTAGGGTGTGTTTAGTTCACACCAAAATTGGAAGTTTGATTGAAATTGGAACGACGTGACAGAAAAGTTAGAAGTTTGTATGTGTAGGAAAGTTTTGATGTGATGAAAAAGTTGGAAGTTTGAAGAAAAAATTTGGAACTAAACTCGGCCTTAGTATATTTTGAAGTATTTATACCAGATCTCACTCTAGCGAGTTTCTTGTTGATAGTAATATCTAATTGATTTCTTTCTCTCTTTTTTTTCTACAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGAATTGCTTGTTAATCTGAAGGTGCCATATGTTGAAACTTCATGCCGGCTATGCAATAGTTCAAACACACAATGAATTTTACTATTGCTCTCTACAAATGGGTTTATATTAGCTGTGAGAATGCTCTCATATGCAGTGGAACCTGTACCTCTAGTGAACTGGGAGCCTGGTTTTCACTTAAAATGCTCCTATTAGGAAGTGATCCCTCTTTGTAGTTAAAATTGTGTTGTCCGAAGGGAGAAGACTAAAGGATGTAGCTCCCCTGATCTACGTGGCCTCCAAGAAAAAGAACAGCACGCTACAACAGACCTCAGCCACAGACCAGTGGCTGCTCGATCTAGACCTTCCTCCAGCCTCAAGCTGGACAACGGAGCTGGTCAGCCAGCTAATCAATGTCTGGAGTGCAGTGCACAACGTGCATTTCACAGAGAATGAGGAGGACAAGATAGTGTGGAAGCTCACTAGCCACGGTGAATATAAGGCGACGTCGGCCTACAAAGCGCAGCTCCTAGGTACTACTGCCACCAACTTTAACATCCTAATATGGAAGCCGTGGGCACCGCGCAAGTGCAAGACCTTTGCCTGGTTGATCATCCAAAATAGAGTTTGGACCTCCGACAGACTGGCAACCAGGGGTTGGCAGAACAACTCTTTCTGCCCCTTATGCAGACACACCCAAGAAACTGCTCTCCACCTCCTCGCAGAATGCAGATACACCAGGAAAATTTGGGCGGCGTTATCTGATTGGACTAGGTGTGGTCAACTGAACCCTGGACAATGGCAACCAGCTCAATCGGTGTTAGAGTGGTGGGAGGCCACCGCCAACTTGAAGGAAGTCCCAAAGAAAGCACTCCGCACGTTAACACTTCTGGTCAACTGGGAAATCTGGAACGAGAGAAATCGTAGAATTTTCCAGCACAAAGAGCTATCTACAGGAAGTCTGTTGGCCAAAATTAAAGAGGAGGCCAAAACATGGTCTCGGGCGGGGGCGAGGCATCTTGGTAGCTGGCTTGCTTTTTATTTTTAGCTCAGTAGGACCGAAGGTCCTGGGCCTGGTTTTTCTTACTCGTAAAGTTTACTCCTTCTCTATTCAATGAAATTGGCAGCTTGCCGATTCGTTCAAAAAAAAAATTGTGTTGTCCAGCCTC
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| CDS seq | ATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGCCGCCCGCAAGCGCCACCTCGACGGCGCCCAGCACCACCGCGCCCGCGCCCTCTGGTACGACGCCGTCCGCCGCCAAGAGCTTCACGGCGGCGGCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCGCCGCCATCGGCGTCTGCCAACACTTCGTCCGTACGGGGACGTGCAAGTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGA
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| Protein seq | MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQPNFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG |
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| Function | Zinc finger CCCH domain-containing protein 3 [UniProtKB/Swiss-Prot:Q0JP11] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g14870 | LOC_Os01g14870.1 | Chr01 | 8334519 | 8338574 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGCTGGGCAAGTACTACTGCGACTACTGCGAGAAGCAGTTCCAGGACACCCCCGCCGCCCGCAAGCGCCACCTCGACGGCGCCCAGCACCACCGCGCCCGCGCCCTCTGGTACGACGCCGTCCGCCGCCAAGAGCTTCACGGCGGCGGCGGCGGCGCTCCTCCCCTCCTCCACCAGCCCGGCGCCGCCGCCATCGGCGTCTGCCAACACTTCGTCCGTACGGGGACGTGCAAGTTTGGGGATTCATGTAGATACTTCCACCCGAAGCCACCTCCTGCTAATCCAGGACCAGCTCCTTCTGGCCCTGTCTCTGGACCAATGGCGCAGCAGTCTAATATTCAAGGAAGTCAACCCAATTTTGTTGGATATCAGGCAGCAGATGGAAGTTCTTTCTCAGGGAACATTCTAGGGGGTCACACCTCATGGGGCAACTTGCCTCCATCACTGCGGCCACCTCCTGAAGGCGGCTATCCTCCATTTCCTTTTGTAGACTGGGGTTGA
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| Protein seq | MPLGKYYCDYCEKQFQDTPAARKRHLDGAQHHRARALWYDAVRRQELHGGGGGAPPLLHQPGAAAIGVCQHFVRTGTCKFGDSCRYFHPKPPPANPGPAPSGPVSGPMAQQSNIQGSQPNFVGYQAADGSSFSGNILGGHTSWGNLPPSLRPPPEGGYPPFPFVDWG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.508595 | 0.390942 | 0.176235 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0252200 | RBH | 0.752079 | 0.581255 | 0.684622 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0252200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010730 | SBH | 3.641753 | 48.553879 | 33.841053 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010820 | SBH | 0.745680 | 4.793701 | 9.691854 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010720 | RBH | 0.669090 | 9.318810 | 1.664582 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010680 | SBH | 0.195914 | 0.798410 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010280 | RBH | 0.0 | 0.0 | 1.976144 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0138000 | RBH | 22.7891065 | 27.571309 | 46.6077465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010280 | SBH | 1.165747 | 2.078288 | 4.531998 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0137700 | SBH | 26.5279505 | 20.065677 | 74.285225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010260 | RBH | 0.081610 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010330 | RBH | 0.646907 | 5.085918 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010250 | RBH | 3.206712 | 21.404230 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010850 | SBH | 1.511989 | 1.694014 | 4.986853 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010690 | SBH | 0.516122 | 9.254601 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010360 | RBH | 0.000000 | 4.562826 | 1.457260 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010710 | SBH | 1.026453 | 17.656080 | 23.456615 |
