Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_01g0010850 | OGI:01027180 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr01:8721461-8726860 | ||||||||
| Gene Symbol | C3H3, OsC3H3, C3H6, OsC3H6 | ||||||||||
| DNA seq | gacttcatctatactaccatttcagtattccagcaagactttcattaaataagcatctcttgtccgttacaatgtgccttgctcccagtatagacacatatgtacttatgtagtttcgagtctcatgtccgttgaatatatagatatataatatatgacaatatacagaaccaaaaaaaaaagggaaaaagacgaactccggaagctggacgagcaaaatccagtagcttctgcatgtataaacctccttgcctgagaattatttaccgagggaatggatccgagtctcccagtgccgcgaactgccgatgagaactatcgagcctgacattcaaaaaccttccttttctttcccgtttcagagaacagaagaacgcaaaaattgcaagtgaatcgagcttgcctgtaacctatgaatgctttattgagatggcagagaaacaccaccctcgccgagccttctctacagaggccacagctttttattcacattggaggggcctatcataactgatgtggaaatgtgcagaatagattgcattagcactttagcggcgccacatatagtataataagggggaaatcaaggagaattcaaaccaacctgtgtcaagtgattgaaaaattgtgctgagatctctcagctcagaaaaatcagcgaccaccgccaggactcgagctaccaccagatgttgtgttagtctgagcacgcatcatggtgtctgctgggaaaacccctttcggcaatattgatccaacaggctcggatgctgccactggcgatgttacttggttgacagattggtctttggtcgaaatgtattctggccttaaatccggggaaggcgaagacggagccaatgtggcaatagagaagccaataggatatggggcaattggcatatcagagaggggcaaagcagacggactgtagccaagcgtgcccattgggtgatcatacttgcatgcaactccatatctgcaatacccattttgggcatagtatgcacaaggctgagccccctgcaagttgagataacacaagcagcttagcaagaaaccaaggagcattttctctacaaaaaagcaaagacaaaaacataggtctatgtgcaatcaccaatcaacttcttccaaacatactatgcaagcctgacactatagatgattaatgcacgaatgtgctgtctcctagcataaattttaagaactgtgtaaaccttttgggcagtgcaaactaattcaggatatcacactgaaaaacaattagtatgagtttgcaactaaagaaggggatcttacaagacctccaaactaattatagaaaagaaagtaatatcaccaatggatatttttaacaatataggacatatttccctacaaagcaagttaaatcagacactagcatttgaaattatgcgtattaggctatttaaagtccatgtatctgttgaagtttgcgcttcactcagatagtgatctctgatttatgggaatatttgggagcccctgtttctataacttgctgagttacactgacgtgtgggccaaacatggctcatcctcacattcaatgttattttcaatttatacatgctcagtgttattgagtaagttttccctctgaaatattataaatgcttattaagtcaaaaaaaaacattatgaatgcttcatccaataacaatttaagctgcaaatagcttcaaaactcaggagctaagtttgaacaatgtatcttacttgatacattcaagtttcaaccaatctttggcccataaaagttatatactagtagatgacaatataacacagttaatatttatcagctaaccaaaattattaagtaatcaactatgttccatgatctcataatccctaaatactcagcataagaaagcttacaatgcctaattgcccaataatctgcttcttctttttgtgattacaagaaagatgcacatgtgcacacacacagaaacatgagcacatgcataagtgcgcctccttttaacacatactcaaacacacaggccaaggataaatccatgaacctcaataaaattcctagtgaaagtgcacatagagaacattatcgttaggaggcttcaacgagtagtggacataatcatatgactagttcctacaacctgtttttcaaaacaaaaatatatgtgcagcctttttttttAaaaaaaaaagaaaaaacatggacattaggactatggaagttcaaccccactcccaaggacattgatgctacggtacgtattagaggtttcagggtactcaccggacgaagtggaagacaaagggagttgaccatatagcctgatttaggtgcactcaactctcgggggtgatgatatttacatgtagctccaaatttgcaatctcctgttctcatataatattgacaatcaggctgccctggccgctcagggaatccatgttcttgttgattgttgcttgattgtccagttgaggaagcatatggaacgtaaggaccaccataagcaattgtagaggaagatccatggtgccccatgccgtacacaggtccagcttgaacattttgttgagctccacctgacactacagggtttaccgaagcctgtataaaatagaagagttaaaaccacaatgagaagactccatcatggcatgtgtcaattattttgtcccatctgattgtttgcttaacacttaaacactggctggttattcaggcagcacatcagtgagtgccttccagctcttgcctaaaagacaataagcacattctacatctttcagtctagattacaaagaacctgcttcacaaatcatgacacaagtatgctgtcgtgcctcatttgttgattcactttgcatttcatagtataagttggctgtcatgtccaatttgtttatcagttttgcatttataggtatgctgtttatttttccacaatagaacatgtaattcaaatcaattaccggataagggctccatccttgcaatgggatcattccagatgagagcatcattggggtgtatgagcctggtatatatgatccaggaactacaggtggtctccccatttgccaatttgcaagagaagcatatggatgaggggaagctatagatggagactgtaatggtgggtatattccaggggtcatcggaacaccaccgaattccggatgatggaatttacatgtagttccaaatttacattgcccagttttcatgtagtaggagcactccttctcaccctgcattttatttgtaccaacatctctttttcaaaacaggaaaaacaagtgtatgaataagcaatattttacgagagatttcacaccaggcgtatagggaatccactgttgtttaacataacaggtagcacagctccatcttgcttaggatggtgatatttgcaattggtaccaaatttgcaagtcccagtcttcatgtaatactgtaaaacaaggaaaaagaattaggaccaacatttacatgtcatatgacatgacattaaaattgttatgtgcttaacaatctcagccaattattatttgagtattatgttgcatgccctgcctgcctgccagttagcaagcaaagaacacatggtgttaatgcaagcttaagtgatggcgggtgcctttttcgttgcataaaagataattgaattcaagcaccaagctgtttagtttgagtacctcgcatataggttgacccgccctttctggataatccaatgctgctgcattccttgcacctccaccaaactacattttgaaaaaatagcaactacttaattttgatgttccaaaatcaagcgaagctttactacctatagactagcataggcaaatatggcatcccatgcgcacagacaaactaatcaatttcttaacgaaaacagaaacatggaaagtagataggctatcaatagacatgagtttcataaatcatttagaaagatcacagttgcaacagaagaatgtaaacttataacaagaactactgaatagttgctatatcttttgcaaacccaacaagtgagaaattcacaaaatcaggatagagggtaaactatcagccaaaagccaaatatgctaaacaaaggactttgctaaccaacggtaagaaaacaggcaagaaagattttcatgtcaataatcattgatcctagatgtctttgttgacacatttgatttaatcaaccaaattaatgacaacggaatgggaaaagaaggatattttttattatgttatcagaatcaacaactgatcttacttaaagaaagattgagcacagaagtttgccatctgcagatgcatgtagtctgacccagtacaatacaatccaattaagcaaaattagcaaacacaaaacacccaaaaaagcagaataagtaaacatgaagcggccaataaagcaggcaacctacagctttctgctttcaaagggatatccaagtgctttaacttgcagaggtgcacctccaccgcgaacccaaactctaatgctgctacccgatgagtgctaccgatgcgccggacaagatctaggcagtggcatgcccaattttcaagctacagaagaactacatttacattggccgaatcaatgttccccatggcacgatcctcacttgggcactaagctgatcacatggttaatccatccaccctagagctgcctcatccacgcacgcgcgcgcgcgcaagccgcaacgaaccagatcgggaagggaagcgcgaattaggagactcacctcagtgccgccgcgatcgcgcgggtggttgtagcggcagcggtcaccgaagccgcacgcgccggtgcggaggtagtagacgcagtcctcctccccgggccgctccggcagcctccccgccgcgtccccatcccctcctcctccacctccacctcccccgcctcctcctcccagccccatcctccacatcggccctgcaaccacaaccaacaaaaccaaaaccaaaacgcagctgctcatccaccacccccgccacacagatcccgcgccacccccgtacggacgccgagatctacatcctcgagctccaaacacaaaaaagcacacaacgagcacgcacgcacgcaccttccaggccggtgtcggggctagccccgccctccccctcccctccaccagctgcggcggcggcggcgtgcggctgctccatgccttcgtcggcgtcagcggcggcgatcggggcggggagcgatcggagtgggaggaggaggagatcgggggtgaggttttgtttcctcttattctctctcctctctctctctctctttctcgcgtttcctttccttccaccaccactctggtgtggtgtggctactgctcttttctctctctctcctcgttttttttcctccc
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| CDS seq | atggagcagccgcacgccgccgccgccgcagctggtggaggggagggggagggcggggctagccccgacaccggcctggaagggccgatgtggaggatggggctgggaggaggaggcgggggaggtggaggtggaggaggaggggatggggacgcggcggggaggctgccggagcggcccggggaggaggactgcgtctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgcgcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatccagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccatatgcttctcttgcaaattggcaaatggggagaccacctgtagttcctggatcatatataccaggctcatacaccccaatgatgctctcatctggaatgatcccattgcaaggatggagcccttatccggcttcggtaaaccctgtagtgtcaggtggagctcaacaaaatgttcaagctggacctgtgtacggcatggggcaccatggatcttcctctacaattgcttatggtggtccttacgttccatatgcttcctcaactggacaatcaagcaacaatcaacaagaacatggattccctgagcggccagggcagcctgattgtcaatattatatgagaacaggagattgcaaatttggagctacatgtaaatatcatcacccccgagagttgagtgcacctaaatcaggctatatggtcaactccctttgtcttccacttcgtccgggggctcagccttgtgcatactatgcccaaaatgggtattgcagatatggagttgcatgcaagtatgatcacccaatgggcacgcttggctacagtccgtctgctttgcccctctctgatatgccaattgccccatatcctattggcttctctattgccacattggctccgtcttcgccttccccggatttaaggccagaatacatttcgaccaaagaccaatctgtcaaccaagtaacatcgccagtggcagcatccgagcctgttggatcaatattgccgaaaggggttttcccagcagacaccatgatgcgtgctcagactaacacaacatctggtggtagctcgagtcctggcggtggtcgctga
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| Protein seq | MEQPHAAAAAAGGGEGEGGASPDTGLEGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTTSGGSSSPGGGR |
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| Function | Zinc finger CCCH domain-containing protein 6 [UniProtKB/Swiss-Prot:Q5NAW2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0010850 | OsLiXu_01g0010850.02 | Chr01 | 8721461 | 8726798 | - | NAM | ||
| CDS seq | atgagcagctgcgttttggttttggttttgttggttgtggttgcagggccgatgtggaggatggggctgggaggaggaggcgggggaggtggaggtggaggaggaggggatggggacgcggcggggaggctgccggagcggcccggggaggaggactgcgtctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgcgcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatccagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccatatgcttctcttgcaaattggcaaatggggagaccacctgtagttcctggatcatatataccaggctcatacaccccaatgatgctctcatctggaatgatcccattgcaaggatggagcccttatccggcttcggtaaaccctgtagtgtcaggtggagctcaacaaaatgttcaagctggacctgtgtacggcatggggcaccatggatcttcctctacaattgcttatggtggtccttacgttccatatgcttcctcaactggacaatcaagcaacaatcaacaagaacatggattccctgagcggccagggcagcctgattgtcaatattatatgagaacaggagattgcaaatttggagctacatgtaaatatcatcacccccgagagttgagtgcacctaaatcaggctatatggtcaactccctttgtcttccacttcgtccgggggctcagccttgtgcatactatgcccaaaatgggtattgcagatatggagttgcatgcaagtatgatcacccaatgggcacgcttggctacagtccgtctgctttgcccctctctgatatgccaattgccccatatcctattggcttctctattgccacattggctccgtcttcgccttccccggatttaaggccagaatacatttcgaccaaagaccaatctgtcaaccaagtaacatcgccagtggcagcatccgagcctgttggatcaatattgccgaaaggggttttcccagcagacaccatgatgcgtgctcagactaacacaacatctggtggtagctcgagtcctggcggtggtcgctga
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| Protein seq | MSSCVLVLVLLVVVAGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTTSGGSSSPGGGR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_01g0010850 | OsLiXu_01g0010850.01 | Chr01 | 8721461 | 8726860 | - | NAM | ||
| CDS seq | atggagcagccgcacgccgccgccgccgcagctggtggaggggagggggagggcggggctagccccgacaccggcctggaagggccgatgtggaggatggggctgggaggaggaggcgggggaggtggaggtggaggaggaggggatggggacgcggcggggaggctgccggagcggcccggggaggaggactgcgtctactacctccgcaccggcgcgtgcggcttcggtgaccgctgccgctacaaccacccgcgcgatcgcggcggcactgagtttggtggaggtgcaaggaatgcagcagcattggattatccagaaagggcgggtcaacctatatgcgagtattacatgaagactgggacttgcaaatttggtaccaattgcaaatatcaccatcctaagcaagatggagctgtgctacctgttatgttaaacaacagtggattccctatacgcctgggtgagaaggagtgctcctactacatgaaaactgggcaatgtaaatttggaactacatgtaaattccatcatccggaattcggtggtgttccgatgacccctggaatatacccaccattacagtctccatctatagcttcccctcatccatatgcttctcttgcaaattggcaaatggggagaccacctgtagttcctggatcatatataccaggctcatacaccccaatgatgctctcatctggaatgatcccattgcaaggatggagcccttatccggcttcggtaaaccctgtagtgtcaggtggagctcaacaaaatgttcaagctggacctgtgtacggcatggggcaccatggatcttcctctacaattgcttatggtggtccttacgttccatatgcttcctcaactggacaatcaagcaacaatcaacaagaacatggattccctgagcggccagggcagcctgattgtcaatattatatgagaacaggagattgcaaatttggagctacatgtaaatatcatcacccccgagagttgagtgcacctaaatcaggctatatggtcaactccctttgtcttccacttcgtccgggggctcagccttgtgcatactatgcccaaaatgggtattgcagatatggagttgcatgcaagtatgatcacccaatgggcacgcttggctacagtccgtctgctttgcccctctctgatatgccaattgccccatatcctattggcttctctattgccacattggctccgtcttcgccttccccggatttaaggccagaatacatttcgaccaaagaccaatctgtcaaccaagtaacatcgccagtggcagcatccgagcctgttggatcaatattgccgaaaggggttttcccagcagacaccatgatgcgtgctcagactaacacaacatctggtggtagctcgagtcctggcggtggtcgctga
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| Protein seq | MEQPHAAAAAAGGGEGEGGASPDTGLEGPMWRMGLGGGGGGGGGGGGGDGDAAGRLPERPGEEDCVYYLRTGACGFGDRCRYNHPRDRGGTEFGGGARNAAALDYPERAGQPICEYYMKTGTCKFGTNCKYHHPKQDGAVLPVMLNNSGFPIRLGEKECSYYMKTGQCKFGTTCKFHHPEFGGVPMTPGIYPPLQSPSIASPHPYASLANWQMGRPPVVPGSYIPGSYTPMMLSSGMIPLQGWSPYPASVNPVVSGGAQQNVQAGPVYGMGHHGSSSTIAYGGPYVPYASSTGQSSNNQQEHGFPERPGQPDCQYYMRTGDCKFGATCKYHHPRELSAPKSGYMVNSLCLPLRPGAQPCAYYAQNGYCRYGVACKYDHPMGTLGYSPSALPLSDMPIAPYPIGFSIATLAPSSPSPDLRPEYISTKDQSVNQVTSPVAASEPVGSILPKGVFPADTMMRAQTNTTSGGSSSPGGGR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.511989 | 1.694014 | 4.986853 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0258700 | RBH | 3.938390 | 4.567445 | 11.922901 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g15460 | RBH | 2.582922 | 2.943073 | 2.874292 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0258700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0011170 | RBH | 1.238924 | 17.907358 | 18.725035 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010820 | RBH | 0.745680 | 4.793701 | 9.691854 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0011180 | RBH | 2.676776 | 18.505861 | 30.084332 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0010680 | RBH | 0.195914 | 0.798410 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0010730 | RBH | 15.487335 | 29.334452 | 65.760170 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0145000 | RBH | 6.687996 | 14.981762 | 21.2012805 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0010730 | RBH | 0.648943 | 1.047784 | 3.239995 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0143500 | RBH | 10.643984 | 12.915085 | 21.898437 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0010700 | RBH | 0.439259 | 0.309262 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0010760 | RBH | 0.807127 | 16.720505 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0010700 | RBH | 9.552184 | 22.112516 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0010690 | RBH | 0.516122 | 9.254601 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010840 | RBH | 0.920453 | 4.113232 | 7.943194 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0010710 | RBH | 1.026453 | 17.656080 | 23.456615 |
