Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g09370 | OGI:01014270 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:4761304-4767339 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACAAAAATGACTGTACCTTCTTCATAAGCCTGATGTTCTGATAATTGCCTGGAACTGATACAATGTTCAGGGGTTGTGAGTAGTATCAGATAGATAACAGGGATTTATGGTTGGTTTTCCATCGTAGAGGTGAGTACGAGACTACGAGAGGACAGTCGCTGGCTGCCGATTGGTGAGAGTTCCGTGAAGTGCATTCTTTACATTTCATCACATATCCAACAAAATAGTGCATCGCTAAGAAAAGAAGTTCCAGCTAGTTATAGTTTACTGATGGACGATTATGCAGTTATTCTGCCTCACTGCTCATCTGGAGGTATCGCCATCAATTCCCTAGCTTTCCTACAAAACATTTGGACGAATAAAATGTCAGTTATAACAACCCAAAGCGTAAAATTGACCCAAAGAAGGAAGAATGGCATATAAAACCGAAAAGAACAGTCGAGTGTTGAGTTGCTTCAGTTGCAGTAAATGTGGGCACAAGCACAACGGAATATGCTAGTACTAATGGTCATGTTCCCTGCGCAACCACATTTTTATTTGGAAGGCATACTCGAGAGAAACGGAAGATTGCCTTAGTTCCCTCTCAATCTCAACATTCCCCGTATCTATTTTTTGCGCATCCATGAGAGCATCACACGCATGTTTGTACTCCTGGTTTTAGAGTAAATCAGGACACGGACCATAATACATGGATCACAATACGTTAGCTGCAGTGAGTCTTACCTTGGGTAGCATGTGAGCTGCACCCTGACGATAGCGAGCTTTTGCCCAGTTAGGCCGCATCATTCAGCATTTGTAAGCATCAGATAGAGCACCTTCAGCATCACCCATGAGCAATCTACAGATGCTCCTGTTTGCGTACAAAACTGCAGTCGGTCCGTGAGCAAGCCTATGCTCAAGCATCAGATAAACAAATCATTCCCAAGCTTAAGAATAACGTACAAAAACTTTATAACAACAATAATTGATTAGCGTTAACAATCAGAAATAAGGTGCAAGAAATTACCAGATCATATATTTTTGCTGCAGCGCCGTAATTCTTCTGCTTGAATAGCAAATCTGCCTGTGCCTTCAAAACGACTTTTCTACTCTCCTTCTGATGTTGATCCTAAACACAACGTAAACAATAGTATCCTGATGCAATCTGAAGTAAACTTTTGAAATTTTGAATAATAGAACATTTATTTAGGATGATTTCCATTAATAAAGAAACTAAGCATCTTTATCTCCAACATTCTTCATGATTTGTGGTTAGTCCTGTGGCATTCTTATGCTGTAATTTAAGCGTACTCGATGATATCGATAACTCAAACAGAACTCTAATTTTGATCAGTTGCAGAAGTCACTACCACTCAAGTATAGCTCTAATTTTCATCATTTACATAAGTCACAATATGTGATACTTACAAGGGAAAAGTCCCCCCCCCTCTGATTTATGTTTCACATTTGAATTAACAACTTAAGGTCCAAATTTGACTTTCTAAGTTGCTGACAATCAAGTCAACAGACAGATGGGCTAGATGTATTATTATATATGAAGAGCTCAAGATGCCACTTATATTTATTATTAAAATTTGTATGTGGACCAGACTTTTAAAGTCAGGTTATTAAGTACTCCAGCGAAATTGAAGACTTCACAACTACTCCAAAGGCTGAAGGACAAAACGGGTTTGTTCTACTTCAAAGGAATATGTATGATAACAAAGCTAAACCAGTACTATTAAGACATGATCCTTCTATCTAGTACTATTAAATGCCATTGATATGTAAGCTAACCCAGTTTTACAGCCTAACAACTTAACAAGCATCAGAGAACTACGTGAAGTGGTGAAATAGAGCTCTGCAATGCAAAGTGCATGGTAAGCAACACGAAATATGAACAGAGAGCATAGCAGTATCTTTAGTACAAAAAGATCAAAAGTGTGTAACTGTATAAAATGTACCATTGGCTTTGTATTTGACTTTTGCATGAGCGATATTCCATTGACACTCCAGTTTGGGACATTTGGAATTGAAGAAGTCAATGGAAATAGCATTTCAACTTCTTCCCTGCAATCATGTAATGCAGCGCTCTATTGGCAACCAACCCAACTGCACAAGCACAACAAAATGAAGAAAAGTCGCTTCATACAGTGTAATTCAGCAAGGAACCTAAAACAAACAATATTGGTGAAATCAGTGTATGGCCTATTATCACAATCTGTGGCTTTCAAGTTTCAACCAAACGACTCATTACGACCCAAAAAACCATGGTGTTAGGTTCAAAGCTGGCCATGGGATTTTTGGACATTGATATGACCTTCTATCAAAATGGTCTTTTGGATATAGGCTGGATTTGAGAACTCATCGGTTACTGAAAGGTCATCCATGCTTTGCACAACTCGTAAGATATACTTACACATACAATAATATAAACGAACACAGGTTCAGATAATCCATAGGAAACTATAAAATATGCAAATGATAAGTGCAATGTTTTTGTTAACTTAAGCCCTGTTCGGATGTGATAAGGATGAAGATTAAATATGGGGTACGTAAAACGAGAAAACCATTAGTGTATGATTAATTGAGTTTTAATTATTTTAAACTTGAAAATGGATTTATTTTATATTTCAAAGCAACTTCTATATATAAAGTTTTCACACGAAATACATAGTTTAACAATTTGAAAAATGTGCTAACGAAAACCGAAGTAAAATCTGTATCTTAATCATAAAGTAACATGACCTTAGTCAAAACAGCCTCAACTTATTGCTAAAATAACTCCCTAAAATAATCAGAGTTGTAATAAAACACACAAGAATCACAGACTTATAGACCAGAGTGGAGAACCAATAACTGACTCAGAAGAATAGAAAACATACATCATCAGGAATATTAGGGTTTGCTCCAGCCTTCAGAAGAAACTGAATGAAGTTAGTATAGCCTCCTTGCGACGCAGCAAGCATCAAAGGGGTTACAACTGTACCCTTGCCATTAACATCAGCACCAGCCTGAGAAAAGCATTGTGCAATAGAATATTTAGCTCCATAAGTTCATGGAACAAATGTCTTGAGTTAGCAAAATTAAAACACCGCATTAGTTGATCAAATATAGACTCAATAAAACACTGACCTTTATGAGTAGCTTCATACACTTCAATGATCGGTAGATAAGGGAACTCATCAGGGGACTACCGGCTCCATTATTGACAATTACGTTAGACTGAAAGCAGAATATAAGAATTTAGCCTCAGTACAACCAGAAAAATATGTGAAAGAAAAAGGGAAGCAATATAATGCTCTAACCTTTTTTTTTCTGATTAATGTTTGCCACTTTTTATAAGTCTAACTGTTGAAGTTAGCAACTTTCGATGTTGAAAGAATTAAAGTTGCATTATGTGCATATTTTACAGACTTTTAACTAAAATAGAAAAAATATATTACACATGAAACCATAATTATTATAATCAGAGTTCAGATATATGTAATGCCACATTTACACAAATTTCATGAAGCCAAACTGAAGTTACTGCATTGGAATGGAAGAGATTTTAGTGGACATTTAGTGAAGTCAATATCAAACCAGAAGGTCAGCAATGAGATAGATGGAGGTACAAATATGCCATGATGATCCTAAAGCATTTCAATCATTAAGAGATGAGTAGATAAAAGAGCAGGATAATAGCTTATATAAGTGCCATGAATTGAACACCTAAATTCTCATGCTCTTTCCCAAAAGAACATCAGCCAACCTTATTTAGAGCATGCCAAATGGCAATTTTAGGACTTGGAAGTATTACTCAAAGGTCAGCGGTATAATAATAATCACAACGCAGGTGGAAGATGCTACGCGCGCGGGGTGGCTGTGTCGATCAGGGGCCTCTGTGAGGCGCACTACACAGGTTAAGTAGCACGCTATCCTAACTCTCATCACAATAATTCATTTCATAACAAAAAAAAAAACAATCCTTTTTAAGACCTGGAAATCCCATATGATCTAAGATCCTCTATAAAATGTCTAAATAAAAACCAAAATGATAGATTATGCACTGCAGTATCTGAGAATGGGTCAATCCAAGCAAACAGAACAGTCCCATGCAAACACGCATCAGTGTACATCAGCTAATGAGCTAACTATCTAAGTGGAAAACAAAACAAACATCTAGCTATCAAACTAGCAGTGAAAAAAAAAAAGAAGAGGAAATAAGAAATAGTAGCAACTACATGCATCTGCCTTGTGATCCAACAAAATCTTCAGTGTCTTATCCTTGCCATTGTTAGCAGCATGAAAGAGTGGTGTTCCAAGGCCACAGTCTATGTCAACAGGTATTCCTTTTGAAAGCAAGAACTCTGTTACCTTACAGCATCCTGCAATGAATGAGATGGGCCATAAATCTTGGGGGAAACAAATACTATATAAATTGAGTTATTTGAATAAACATTTACCAATACAATGGACAAATCACAATAGATTGCATGTGAGATGTGAGCGAGTATAAACAGAGCAAACCAATACAACTTTGAGTGGTGATATATAAACTAAAAGTATCTAGATTAGCAACACAATAAAAGATAACTGTGACGACATGGTTGGATTAAATGTAATCTATTAATAGTAATGCAGTATCGTAGAATCTTGTACAACAATATAATTGGTAATATAACAAGGAAATGGATAGTGTTCATATCAAGGGAGACCTGTGCCAGCAGCATGGTGGAGAACTGTGCATCCTCTAACATCTGCTTTTGTTACATCACCACTATGATCAAGAAAATACTCCACCGTAGGAACATCACCAGACTCAGCAGCGGCCATAAACGGTGTTATATCTGTAATAAACAGCACATCAGTACACTTGGCACATTATACTGCCAAAGCATAGACATGGCAACCGTCAATTTCACGAAAGGATGGTACAGTTAGATAATGACCTTCTTTTCCAGCAATATTCACGTCACCCCCCAATTCCTCCACCAAGAACTTGCAAACATTCAGATGGCCCTGGCATGCCGCGGCGTGCAGCACCCCAATCCCATGCTTGTTAAGAGCTAAGACGGCATCTAGGGATGCAAGCGGGCCAACTCGCAAACCTACTTATATGTAAAATAAGTGATAACCCGTGTGTTTTCACGTCGTGGTCCGATTTGCCGCACTTAGAGATGCAAGTGGGTCGATCCATAAACTCATTTATACGGGTTACCTACTAATTTTGCCTATAAGCGGGTTCACGGGTTGACCCGCTTGCAACCCTAAGTCTTTCCTTTCTGAATCCCAAGGCTCTTTATAAAACCTTCTCCCAAATAAGAACAAAAAGAAAAGTCATCACAGTGAGGAAGATAATCTGAAAATGAACAGATTAACTAGGTAGAACGTGAAAAGAAAAGCGACGAAAACGTGCAACGTGCAAGAACCTCACTGAGTCATGTGAACCTATACCTTGTGACTTGAAAACATTTGTGTAGAGTACTGTCTGCTACACATCACACATTAGCACTTGGGAGAGGTAATTGTAATAGAAAGATGATCACAACATTGTCGCATTTATCCAATGCAAGGACTTGCTACAATAAAAGCCTCAGTCAGGTCTTGCAATTTCTAGATAAGATGGCATGCATCTCCAGTAATCCATAGACCTGGCTGTTAATTCCTTCACGCAGGGTGAAAAATCCACGCAGCCATAACATCACCGAAAATAAAATAAAATGTGGGAAATTCCCAAAGGCAACAGCAACGCAGCAAGCGCCCTTCCTTCAAAAATTCCATGGCCAAATTAATTAGCAGTACTACAGCCATCGCCAAGCGTTCCACACAGGAGGAATCACCCAAACCTAAGGGAGGAAAATCACGCAACAGGCGCATGCAAAAGGGGGCCAATGCGTAGACGCATCGATCGGGGAAGGGGATCGACGCGGCGGAGAAGAAGAAGGGGAGGAGGAGGAGGAGAGGTAGTAGCAACCTTTGAGGCGTCCGAGGTTCCCGTCGAAGGCCGCCCTCAGGCCTCAGGAGAGCGCTCTCACCTGCGAACAAACCGAGAAATCGCCATTAGAGCACAT
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| CDS seq | ATGTGCTCTAATGGCGATTTCTCGGTTTGTTCGCAGCAGACAGTACTCTACACAAATGTTTTCAAGTCACAAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTAGCTCTTAACAAGCATGGGATTGGGGTGCTGCACGCCGCGGCATGCCAGGGCCATCTGAATGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATATAACACCGTTTATGGCCGCTGCTGAGTCTGGTGATGTTCCTACGGTGGAGTATTTTCTTGATCATAGTGGTGATGTAACAAAAGCAGATGTTAGAGGATGCACAGTTCTCCACCATGCTGCTGGCACAGGATCATCATGGCATATTTGTACCTCCATCTATCTCATTGCTGACCTTCTGTCTAACGTAATTGTCAATAATGGAGCCGGTAGTCCCCTGATGAGTTCCCTTATCTACCGATCATTGAAGTGTATGAAGCTACTCATAAAGGCTGGTGCTGATGTTAATGGCAAGGGTACAGTTGTAACCCCTTTGATGCTTGCTGCGTCGCAAGGAGGCTATACTAACTTCATTCAGTTTCTTCTGAAGGCTGGAGCAAACCCTAATATTCCTGATGATAGCGCTGCATTACATGATTGCAGGGAAGAAGTTGAAATGCTATTTCCATTGACTTCTTCAATTCCAAATGTCCCAAACTGGAGTGTCAATGGAATATCGCTCATGCAAAAGTCAAATACAAAGCCAATGGATCAACATCAGAAGGAGAGTAGAAAAGTCGTTTTGAAGGCACAGGCAGATTTGCTATTCAAGCAGAAGAATTACGGCGCTGCAGCAAAAATATATGATCTGCATAGGCTTGCTCACGGACCGACTGCAGTTTTGTACGCAAACAGGAGCATCTGTAGATTGCTCATGGGTGATGCTGAAGGTGCTCTATCTGATGCTTACAAATGCTGA
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| Protein seq | MCSNGDFSVCSQQTVLYTNVFKSQGLRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGSSWHICTSIYLIADLLSNVIVNNGAGSPLMSSLIYRSLKCMKLLIKAGADVNGKGTVVTPLMLAASQGGYTNFIQFLLKAGANPNIPDDSAALHDCREEVEMLFPLTSSIPNVPNWSVNGISLMQKSNTKPMDQHQKESRKVVLKAQADLLFKQKNYGAAAKIYDLHRLAHGPTAVLYANRSICRLLMGDAEGALSDAYKC |
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| Function | Ankyrin repeat and SOCS box protein 3 [UniProtKB/Swiss-Prot:Q9WV72] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g09370 | LOC_Os01g09370.1 | Chr01 | 4761304 | 4767339 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGCTCTAATGGCGATTTCTCGGTTTGTTCGCAGCAGACAGTACTCTACACAAATGTTTTCAAGTCACAAGGTTTGCGAGTTGGCCCGCTTGCATCCCTAGATGCCGTCTTAGCTCTTAACAAGCATGGGATTGGGGTGCTGCACGCCGCGGCATGCCAGGGCCATCTGAATGTTTGCAAGTTCTTGGTGGAGGAATTGGGGGGTGACGTGAATATTGCTGGAAAAGAAGATATAACACCGTTTATGGCCGCTGCTGAGTCTGGTGATGTTCCTACGGTGGAGTATTTTCTTGATCATAGTGGTGATGTAACAAAAGCAGATGTTAGAGGATGCACAGTTCTCCACCATGCTGCTGGCACAGGATCATCATGGCATATTTGTACCTCCATCTATCTCATTGCTGACCTTCTGTCTAACGTAATTGTCAATAATGGAGCCGGTAGTCCCCTGATGAGTTCCCTTATCTACCGATCATTGAAGTGTATGAAGCTACTCATAAAGGCTGGTGCTGATGTTAATGGCAAGGGTACAGTTGTAACCCCTTTGATGCTTGCTGCGTCGCAAGGAGGCTATACTAACTTCATTCAGTTTCTTCTGAAGGCTGGAGCAAACCCTAATATTCCTGATGATAGCGCTGCATTACATGATTGCAGGGAAGAAGTTGAAATGCTATTTCCATTGACTTCTTCAATTCCAAATGTCCCAAACTGGAGTGTCAATGGAATATCGCTCATGCAAAAGTCAAATACAAAGCCAATGGATCAACATCAGAAGGAGAGTAGAAAAGTCGTTTTGAAGGCACAGGCAGATTTGCTATTCAAGCAGAAGAATTACGGCGCTGCAGCAAAAATATATGATCTGCATAGGCTTGCTCACGGACCGACTGCAGTTTTGTACGCAAACAGGAGCATCTGTAGATTGCTCATGGGTGATGCTGAAGGTGCTCTATCTGATGCTTACAAATGCTGA
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| Protein seq | MCSNGDFSVCSQQTVLYTNVFKSQGLRVGPLASLDAVLALNKHGIGVLHAAACQGHLNVCKFLVEELGGDVNIAGKEDITPFMAAAESGDVPTVEYFLDHSGDVTKADVRGCTVLHHAAGTGSSWHICTSIYLIADLLSNVIVNNGAGSPLMSSLIYRSLKCMKLLIKAGADVNGKGTVVTPLMLAASQGGYTNFIQFLLKAGANPNIPDDSAALHDCREEVEMLFPLTSSIPNVPNWSVNGISLMQKSNTKPMDQHQKESRKVVLKAQADLLFKQKNYGAAAKIYDLHRLAHGPTAVLYANRSICRLLMGDAEGALSDAYKC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.159157 | 0.194493 | 0.644942 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0188900 | SBH | 2.703132 | 1.168776 | 5.307414 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0188900 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006680 | SBH | 0.313759 | 0.0 | 4.483479 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006320 | SBH | 0.000000 | 0.000000 | 2.630182 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0006630 | SBH | 0.433991 | 0.0 | 9.708139 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005110 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005330 | SBH | 0.671909 | 0.0 | 8.830068 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0069000 | SBH | 1.808431 | 6.8238785 | 4.116335 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006290 | SBH | 1.312307 | 0.000000 | 3.131359 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0069500 | SBH | 2.926017 | 10.1367605 | 24.332473 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006100 | RBH | 0.000000 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006300 | SBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006350 | SBH | 14.306790 | 30.515209 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005270 | SBH | 0.0 | 0.000000 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006260 | SBH | 0.933646 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006300 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005190 | SBH | 0.0 | 0.0 | 0.841257 |
