Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g04370 | OGI:01006550 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:1948737-1949587 | ||||||||
| Gene Symbol | HSP16.9A, Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI, Oshsp16.9 | ||||||||||
| DNA seq | ATAACATCGGAATTCAAAAACGTTTGCATGATGTTTGCAACCTGAAAAGCTCTTTATTTATTCCTCAACGAGCAAGAACTAAGAAGGCGATTACACAAGTACTCACAAAGGAATACATGAAACCGGCCGACTCAGCCACTCGGACTCCCAACGGGTACGACACACCAGCAGCAGACCATACTTGCACGACCAAACAAACACACACTGAAATACTGAATTACTGACACCAAACATGACTTCTTCCCTCACCGATCACATCTTCAGGAGCTTAACCGGAGATCTCAATGGCCTTCACCTCAGGCTTCTTGACCTCGGCCTTGGGCACGGTGACAGTGAGCACGCCGTTCTCCAGTCCGGCCTTCACCTGGTCCACCTTGGCGTTCTCCGGCAGCCTGAACCGCCGCATGAACTGCCCGCTGCTGCGCTCCACGCGGTGCCACTTGTCGTTCTTGTCCTCCTTCTCCTTGCTGCGCTGGCCGCTGATCACCAGCACGTTGCCTTCCTCCACCTCCACCTTCACCTCCTCCTTCTTGACGCCGGGGAGGTCGGCCTTGAAGACGTGCGACTCCGGCGTCTCCTTCCAGTCGATGCGGGCGTTGGCGAAGGCGGCGGTGTCGTTGTCGGAGGTGGCCGGGACGACGGAGCGGAACACGCTGTCGAAGGGGTCCCAGAGGTCGAGGGAGAATGGGTCGAACACGTTGCTGCGCCTCACCAGCGACATGGTTGCTCTATCTTTCGCTTTCTGATGCGAAGTTGTGGGCTACTGAAATGGAACGGAAGAAGCGATTGCAAAGAGGGCGATTTGGGAGTTTGGGACGTATGCAAGTCTTGTTTGTTGTGTGTTCCTCGGT
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| CDS seq | ATGTCGCTGGTGAGGCGCAGCAACGTGTTCGACCCATTCTCCCTCGACCTCTGGGACCCCTTCGACAGCGTGTTCCGCTCCGTCGTCCCGGCCACCTCCGACAACGACACCGCCGCCTTCGCCAACGCCCGCATCGACTGGAAGGAGACGCCGGAGTCGCACGTCTTCAAGGCCGACCTCCCCGGCGTCAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGAAGGCAACGTGCTGGTGATCAGCGGCCAGCGCAGCAAGGAGAAGGAGGACAAGAACGACAAGTGGCACCGCGTGGAGCGCAGCAGCGGGCAGTTCATGCGGCGGTTCAGGCTGCCGGAGAACGCCAAGGTGGACCAGGTGAAGGCCGGACTGGAGAACGGCGTGCTCACTGTCACCGTGCCCAAGGCCGAGGTCAAGAAGCCTGAGGTGAAGGCCATTGAGATCTCCGGTTAA
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| Protein seq | MSLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG |
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| Function | 16.9 kDa class I heat shock protein 1 [UniProtKB/Swiss-Prot:P27777] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g04370 | LOC_Os01g04370.1 | Chr01 | 1948737 | 1949587 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCGCTGGTGAGGCGCAGCAACGTGTTCGACCCATTCTCCCTCGACCTCTGGGACCCCTTCGACAGCGTGTTCCGCTCCGTCGTCCCGGCCACCTCCGACAACGACACCGCCGCCTTCGCCAACGCCCGCATCGACTGGAAGGAGACGCCGGAGTCGCACGTCTTCAAGGCCGACCTCCCCGGCGTCAAGAAGGAGGAGGTGAAGGTGGAGGTGGAGGAAGGCAACGTGCTGGTGATCAGCGGCCAGCGCAGCAAGGAGAAGGAGGACAAGAACGACAAGTGGCACCGCGTGGAGCGCAGCAGCGGGCAGTTCATGCGGCGGTTCAGGCTGCCGGAGAACGCCAAGGTGGACCAGGTGAAGGCCGGACTGGAGAACGGCGTGCTCACTGTCACCGTGCCCAAGGCCGAGGTCAAGAAGCCTGAGGTGAAGGCCATTGAGATCTCCGGTTAA
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| Protein seq | MSLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.795520 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136100 | RBH | 0.0 | 0.0 | 3.226872 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04380 | RBH | 0.0 | 0.0 | 0.665318 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002520 | SBH | 0.232327 | 0.0 | 4.277351 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002410 | SBH | 0.0 | 0.0 | 0.383923 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002590 | RBH | 0.0 | 0.0 | 2.125395 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002430 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002490 | RBH | 1.230126 | 0.0 | 2.657478 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0032800 | RBH | 0.4489385 | 0.023133 | 0.524219 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002470 | SBH | 0.110859 | 0.0 | 2.880089 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0032700 | SBH | 0.1051315 | 0.1328945 | 0.1767475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002300 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002480 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002560 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002510 | SBH | 0.197951 | 0.0 | 0.471355 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002420 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002630 | SBH | 0.0 | 0.0 | 0.431683 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002510 | SBH | 0.0 | 0.0 | 2.598621 |
