Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_01g0002510 | OGI:01006550 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr01:1941250-1946242 | ||||||||
| Gene Symbol | HSP16.9C, Oshsp16.9C, OsHsp16.9C, HSP16.9C, OsHSP16.9C-CI, Oshsp 16.9C, HSP16.9A, Oshsp16.9A, OsHsp16.9A, HSP16.9A, OsHSP16.9A-CI, Oshsp16.9, HSP16.9B, Oshsp16.9B, OsHsp16.9B, HSP16.9B, OsHsp17.0, OsHSP16.9B-CI, OsHSP17.0, OsSHSP2, OsSTA3 | ||||||||||
| DNA seq | tcagccagagatctcaacggccttcacctcgggcttcttgacctcagccttgggcacggtgacggtgagcacgccgttctccatgctggccttcacctggtccaccttggcgttctccggcagcctgaaccgccgcatgaactgcccgctgctgcgctccacgcggtgccacttgtcgttcttgtcctccttctccttgctgcgctgcccgctgatcaccagcacgttgccctcctccacctccaccttcacctcctccttcttcacgccggggaggtcggccttgaagacgtgcgactccggcgtctccttccagtcgacgcgggcgttggcgaaagcggcggtgtcgcggtcggaggtcgccgggacgagggagcggaggacgccgtcgaaggggtcccagaagtcggcgaaggggtcgaacacgttgctgcgcctcacgagcgacattgTtggtttgtcgtggatcgctagctgcttaggtttctttgtatgaagtggattggaggaagtttggaacgagtgtttgtttggagctcgatcaaatgcttcagtcttggctcgatggatggaggttggggaatgaggcaggatatttataggttcacaactaatctgtcctgaaatctctggacttctctggttcttgctcgtttcgctttacagcacactcgatctgcttcgcttccgtcactccagtactccatcagcctctacaaagcggggctcaccttaatttgctctagagtattcatttttCccccacatatcttgcttctttgatgtaggttactttgattgcgatcaaatcttatcgtgtactccttcagtcccaaaacaaaagcagccatgaatttcagtgttcaactttgatcgtccatcttatttgaattttttttacgattagtatttatactgttattagattataaaacatgaataatactttatacgtgacttttgttttttagttttttaaaaaatattttaaataagacgaacgattaaatttgtacacggaaacttattgtttcatttattctgtgatggaggggatagcgagtatggaatgattgattgagaacgagaaactacgagaaccaattgcccgctagtgtgggccccaggcagatgggcagtactgatcctgaaccgtttggaaatatgtcgtgaaactatggagtccttttggcataccaaattacaccagttttgaagtattacttcactgtacatcgtagagtgagtactagatcattccagtgggtttagggaatgcttcaattcactgctttcactgggagcagtgagtctcttgcgaaacatatttttaacggcaacttgtgaaagaaaaacacatttgagtttgaattcacaaccacgttattttacaatgcaggtcatgcccatgactgaaaggtAaaaatcactgccaaagcattgcttcgttggtatgTtttttttttttagtgaattacacttttgggtcacgtctattgcactttggatcaccctgatttttttaagacataggtggatgatttcgccagcgtgtcagagttgacatcctcgaggtcgtttacatgttaaagaagaggttttgggtggttcaaagtacaacggacgtaaatttagctagtccaaagtgataagactgaactagtgatgatccaatataaaactacaacagtaacaggtggtccaaagtgtaattcactctaaattttatatgtactacctttcttattagggttgtttctggtttggtgccatgaattatattggtagggccaatgtaattgatgcatttttcttccttttcctaacttcttttttttttttttgaaacacaatacaatgcagacgtctacaacacgtacacactgacccgtatgaacatacacgcgaacaccctactctatgagcaccttcaaaagactgaccctacataaagtcaccgtagacatttacgggtatgtcgtctaccactgaaagaataattagccataaatgtgagcacccgtatcaaatctagaatttgaacccgagttccatcacaagaaacctaacctaacctgttatgctacgcttatttcacatctcttataaatttacaaaaattggttgctaaatattcatgcattggtcagaagtgataaaggccataTtttttttTATCCAACAATGTTTATACCGATACTAAAATTTGAATTTGAGGTTATATCGCTGTAGTTCTTTTTTATAACATCGATATTTAAGTCATGAAGAACATATACATAGTTTAACCATAAATTATTTAATCGCTAATATATCGTTTGATGAATTATAAGTAAATGTAAACGGGTAAACATTTACCGCGTATCTACTAAACGTTTTTTTTTAAAAGGAGGGCAAAAGCTTTGCCTCGTATATTGATAGAGATGGAGAAAATACAGGGCGATAGAATTATGTACAGGGCTAGTCTAAAAAAGAACTAAGCCCGCAAAAGGTGATGGTTAAGTGATATCTCCCAAGATTCCGAACTCTTGAAGCTTATAGGCTCCTGCTTTGACCCATGCCCGACCTTCCTCTTTTATCTTAGCGAGGATGGATGCCAGTGGCGATGCAGTGTTTCGAAAAATTCTTGCATTTCGCTCACACCATATTTCCCAGGAGACCAAGATCACCAGAGTACGCAGGGGAATGCGGGGGTTGTTGGgagaatctaccacaaggttccaccattgttctaccgagtcgcaatcgctccatttgatcatttggaggttggtttgagtccacctttgtatttctgtccagacccgctttgtaactctacagtgtgccagcaggtggactgctgactcgtcaattatgcagcacaacgggcaaatcttctggttttgccatcctcttttctcaagtctgtcaactgtccagagcctattttgggtagcgagccaggagaagaatttgcattttggaggggcccacgctttccagataatttgattgaaggcagacctcgtggcccccaggaattggagcctgtaggcagactttgctgagtattgaccattggctgtcaaatcccaatggacgctatcttggtcttcaatcagggggttcattcttctgatcatagtccataggtggacggactgctgaacgtgatccgcctcagtgctgcggaggatgtcgatgtctctgacccagttgctttcctgcagggcatcatggacagatctgttctttcgttttgaggccacatagatgtctggggcgattttctaaggagtttggttctctagccacttggagtcccaaaagcgagcagttctaccgttgccgattgttatggttgttgcggccgaaaaaagctccctatcttcctgactgcacggaaccgccgttcccacccaaggcttctctggggccgtccattcataccatagccacctaagccgcaaggcggaggcgaagcgctgaaggtccattattcctagtcctcccaagtctttggggctgcagacttttttccagttgaccttgcatttccccctagaaatgttttcccctcctgcccagagaaatttccttcttattttatcaatgtcctctaaggttccatccgaaagctttagggaggttaagtggtaaataggctgcgctgtgagaactgttttggttaaacagatccttgcggccgctgacatcattttcccttgccagggggccaggcgactttcttcagccttcctaccaccagtggtagtccgagatatttcatggggaaatttgttagccctgccgagatggtgctgagatcgatggtgctgcatcggattgggatctactaaacgtttcaaaatgtactaaacgataaggtgtcaaaactgatctcttaaaagttttatggttgaagttgcattctaggtataatatgAtgTtgttttttgtaacttaaaccttatataaatcgtgagttttattaaatttacttaaaaATatagtgacctgaaacttatcgactcttatcacattccatttcttcggctgaagtttcaaatcagaccaccgcacacctaggagtataactgttgtcaaaagctagtatacctaggagtataactgttgtcaaaagctagtataacacagTAtatataacatcggaattcaaaaacgtttgcatgatgtttgcaacctgaaaagctctttatttattcctcaacgagcaagaactaagaaggcgattacacaagtactcacaaaggaatacatgaaaccggccgactcagccactcggactcccaacgcgtacgacacaccagcagcagaccatacttgcacgaccaaacaaACacacactgaaatactgaattactgacaccaaacatgacttcttccctcaccgatcacatcttcaggagcttaaccggagatctcaatggccttcacctcaggcttcttgacctcggccttgggcacggtgacagtgagcacgccgttctccagtccggccttcacctggtccaccttggcgttctccggcagccggaaccgccgcatgaactgcccgctgctgcgctccacgcggtgccacttgtcgttcttgtcctccttctccttgctgcgctggccgctgatcaccagcacgttgccttcctccacctccaccttcacctcctccttcttgacgccggggaggtcggccttgaagacgtgcgactccggcgtctccttccagtcgatgcgggcgttggcgaaggcggcggtgtcgttgtcggaggtggccgggacgacggagcggaacacgctgtcgaaggggtcccagaggtcgagggagaatgggtcgaacacgttgctgcgcctcaccagcgacatggttgctctaactttcgctttctgatgcgaagttgtgggctactgaaatggaacggaagaagtgattgcaaagagggcgatttgggagtttgggacgtatgcaagtcttgtttgttgtgtgttcctcggt
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| CDS seq | atgtcgctggtgaggcgcagcaacgtgttcgacccattctccctcgacctctgggaccccttcgacagcgtgttccgctccgtcgtcccggccacctccgacaacgacaccgccgccttcgccaacgcccgcatcgactggaaggagacgccggagtcgcacgtcttcaaggccgacctccccggcgtcaagaaggaggaggtgaaggtggaggtggaggaaggcaacgtgctggtgatcagcggccagcgcagcaaggagaaggaggacaagaacgacaagtggcaccgcgtggagcgcagcagcgggcagttcatgcggcggttccggctgccggagaacgccaaggtggaccaggtgaaggccggactggagaacggcgtgctcactgtcaccgtgcccaaggccgaggtcaagaagcctgaggtgaaggccattgagatctccgctcctgaagatgtgatcggtgagggaagaagtcatgtttgcaacgtgttcgaccccttcgccgacttctgggaccccttcgacggcgtcctccgctccctcgtcccggcgacctccgaccgcgacaccgccgctttcgccaacgcccgcgtcgactggaaggagacgccggagtcgcacgtcttcaaggccgacctccccggcgtgaagaaggaggaggtgaaggtggaggtggaggagggcaacgtgctggtgatcagcgggcagcgcagcaaggagaaggaggacaagaacgacaagtggcaccgcgtggagcgcagcagcgggcagttcatgcggcggttcaggctgccggagaacgccaaggtggaccaggtgaaggccagcatggagaacggcgtgctcaccgtcaccgtgcccaaggctgaggtcaagaagcccgaggtgaaggccgttgagatctctggctga
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| Protein seq | MSLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISAPEDVIGEGRSHVCNVFDPFADFWDPFDGVLRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAVEISG |
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| Function | 16.9 kDa class I heat shock protein 1 [UniProtKB/Swiss-Prot:P27777] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0002510 | OsNaBo_01g0002510.01 | Chr01 | 1941250 | 1946112 | - | NAM | ||
| CDS seq | atgtcgctggtgaggcgcagcaacgtgttcgacccattctccctcgacctctgggaccccttcgacagcgtgttccgctccgtcgtcccggccacctccgacaacgacaccgccgccttcgccaacgcccgcatcgactggaaggagacgccggagtcgcacgtcttcaaggccgacctccccggcgtcaagaaggaggaggtgaaggtggaggtggaggaaggcaacgtgctggtgatcagcggccagcgcagcaaggagaaggaggacaagaacgacaagtggcaccgcgtggagcgcagcagcgggcagttcatgcggcggttccggctgccggagaacgccaaggtggaccaggtgaaggccggactggagaacggcgtgctcactgtcaccgtgcccaaggccgaggtcaagaagcctgaggtgaaggccattgagatctccgctcctgaagatgtgatcggtgagggaagaagtcatgtttgcaacgtgttcgaccccttcgccgacttctgggaccccttcgacggcgtcctccgctccctcgtcccggcgacctccgaccgcgacaccgccgctttcgccaacgcccgcgtcgactggaaggagacgccggagtcgcacgtcttcaaggccgacctccccggcgtgaagaaggaggaggtgaaggtggaggtggaggagggcaacgtgctggtgatcagcgggcagcgcagcaaggagaaggaggacaagaacgacaagtggcaccgcgtggagcgcagcagcgggcagttcatgcggcggttcaggctgccggagaacgccaaggtggaccaggtgaaggccagcatggagaacggcgtgctcaccgtcaccgtgcccaaggctgaggtcaagaagcccgaggtgaaggccgttgagatctctggctga
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| Protein seq | MSLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISAPEDVIGEGRSHVCNVFDPFADFWDPFDGVLRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAVEISG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_01g0002510 | OsNaBo_01g0002510.02 | Chr01 | 1945428 | 1946242 | - | IsoSeq | ||
| CDS seq | cgaggaacacacaacaaacaagacttgcatacgtcccaaactcccaaatcgccctctttgcaatcacttcttccgttccatttcagtagcccacaacttcgcatcagaaagcgaaagttagagcaaccatgtcgc |
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| Protein seq | RGTHNKQDLHTSQTPKSPSLQSLLPFHFSSPQLRIRKRKLEQPCR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 2.598621 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0136000 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04380 | RBH | 0.0 | 0.0 | 0.665318 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002530 | RBH | 0.0 | 0.0 | 6.492598 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002420 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002590 | RBH | 0.0 | 0.0 | 2.125395 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002440 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002500 | RBH | 0.0 | 0.0 | 1.383523 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0032700 | RBH | 0.9760275 | 0.0708355 | 2.476963 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002480 | SBH | 0.0 | 0.0 | 1.579914 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0032600 | SBH | 1.062426 | 0.3343085 | 1.266708 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002330 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002490 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002560 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002520 | RBH | 0.0 | 0.0 | 2.933857 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002440 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002630 | SBH | 0.0 | 0.0 | 0.431683 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002520 | RBH | 0.0 | 0.0 | 6.706158 |
