Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g03360 | OGI:01004680 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:1353629-1354802 | ||||||||
| Gene Symbol | RBBI3-3, RBBI3-3, OsBBPI, BBPI | ||||||||||
| DNA seq | TTTCTGATCATTTTATATGTCGAGTAGGTAAATATCGCTCGTTCATCTCTTATTTATGATGAGACAACTCAACATGGGTACATATCCACGCTTGCATTGCATATTTATTTTATTTTTCCTCATGGTCCACACAAGCGAACAGAGACAAACACACCCACACACATGGAGCACACAAACTAACAAAGCATGCAAGATGCACAAAAGCTGCAGAGCACTGAAAAATCTGGATGGAGCTAAGCTCTAGCCTCTAGCTATACCAACTCTGAATGATCGAACGAACGATCAGCTAGCTGCAAGCTAGGGCGAGTTTTATTGATGGACACACAGATCGATCATCGATCATCTGTAGCTAGCTAGTTCTCCGCTCGGGGTTTGCACACGGGGCCGGGATGGCCGGTGAAGCGGTCCTTGCAGACGTAGCGAGGCGGCTCCGACGACTCCACGCGCTGGCAATCCTTGCACGCGTCGGCGCACTCCTTCACCTCGTCCATGCAGCGGCAGGTCGGCGGGTTCATCTTGTTGCAGAAGGCCTTGTCGCAGCAATCTCCCCATGGCCGCGGCGTGCAGAAGGGGCCCGGGTCGGCGCCCCAGTAGATGTCCTCGCAGATGAGCTTCCCCGGGAATGGCCCCGGCGCCTCCCGGCACGACTTGCACGCGGCGGTGCACTGGCTGGGCTCCAGCTCGTCGTTGCAGCGCCACTGCGGCGGGTCGGGCTTCGTCGGCAGCCGCTTGATGTTGTCGCAGCACTTCCACGGCCTCTCCATCGACAGCCCATCCAGCGCCGCCGTGCACTTGGGGCCGGGGTCCACCGTCGAGAACCAGTCACTGCAGACGAAGGCGCCGCCGTTGAAGTCGCCGCCGGGCGCCTCCACGCACTCCTTGCAGGCGGCGGCGCACTGCTTCACCTCGTCGTTGCAGCGGTACAGTGGCGGGTAGATCATTAGCCGGGAGATCTCGATGTTGTCGCAGCAGTCCCATGGTTTGGCGGCGCGTGGTCGTGATGCTTTGGCGCCGTCGCTGGGGAGACGGATGGTGGTGTCGCCGTCGCCGTGGGCGGCGGCGAGGCCGGCGAGGAGGAAGAGCAGGATGGTGGAAGTAGCCATGGTAGTGTTGCTCATCTTGGTTGTACTGGGGGGTGTGGGTGTTAGTGATGGGTCGAGTGGTTAATATTTAT
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| CDS seq | ATGAGCAACACTACCATGGCTACTTCCACCATCCTGCTCTTCCTCCTCGCCGGCCTCGCCGCCGCCCACGGCGACGGCGACACCACCATCCGTCTCCCCAGCGACGGCGCCAAAGCATCACGACCACGCGCCGCCAAACCATGGGACTGCTGCGACAACATCGAGATCTCCCGGCTAATGATCTACCCGCCACTGTACCGCTGCAACGACGAGGTGAAGCAGTGCGCCGCCGCCTGCAAGGAGTGCGTGGAGGCGCCCGGCGGCGACTTCAACGGCGGCGCCTTCGTCTGCAGTGACTGGTTCTCGACGGTGGACCCCGGCCCCAAGTGCACGGCGGCGCTGGATGGGCTGTCGATGGAGAGGCCGTGGAAGTGCTGCGACAACATCAAGCGGCTGCCGACGAAGCCCGACCCGCCGCAGTGGCGCTGCAACGACGAGCTGGAGCCCAGCCAGTGCACCGCCGCGTGCAAGTCGTGCCGGGAGGCGCCGGGGCCATTCCCGGGGAAGCTCATCTGCGAGGACATCTACTGGGGCGCCGACCCGGGCCCCTTCTGCACGCCGCGGCCATGGGGAGATTGCTGCGACAAGGCCTTCTGCAACAAGATGAACCCGCCGACCTGCCGCTGCATGGACGAGGTGAAGGAGTGCGCCGACGCGTGCAAGGATTGCCAGCGCGTGGAGTCGTCGGAGCCGCCTCGCTACGTCTGCAAGGACCGCTTCACCGGCCATCCCGGCCCCGTGTGCAAACCCCGAGCGGAGAACTAG
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| Protein seq | MSNTTMATSTILLFLLAGLAAAHGDGDTTIRLPSDGAKASRPRAAKPWDCCDNIEISRLMIYPPLYRCNDEVKQCAAACKECVEAPGGDFNGGAFVCSDWFSTVDPGPKCTAALDGLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFCNKMNPPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVCKPRAEN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:Q0JR25] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g03360 | LOC_Os01g03360.1 | Chr01 | 1353629 | 1354802 | - | MSU_osa1r7 | ||
| CDS seq | ATGAGCAACACTACCATGGCTACTTCCACCATCCTGCTCTTCCTCCTCGCCGGCCTCGCCGCCGCCCACGGCGACGGCGACACCACCATCCGTCTCCCCAGCGACGGCGCCAAAGCATCACGACCACGCGCCGCCAAACCATGGGACTGCTGCGACAACATCGAGATCTCCCGGCTAATGATCTACCCGCCACTGTACCGCTGCAACGACGAGGTGAAGCAGTGCGCCGCCGCCTGCAAGGAGTGCGTGGAGGCGCCCGGCGGCGACTTCAACGGCGGCGCCTTCGTCTGCAGTGACTGGTTCTCGACGGTGGACCCCGGCCCCAAGTGCACGGCGGCGCTGGATGGGCTGTCGATGGAGAGGCCGTGGAAGTGCTGCGACAACATCAAGCGGCTGCCGACGAAGCCCGACCCGCCGCAGTGGCGCTGCAACGACGAGCTGGAGCCCAGCCAGTGCACCGCCGCGTGCAAGTCGTGCCGGGAGGCGCCGGGGCCATTCCCGGGGAAGCTCATCTGCGAGGACATCTACTGGGGCGCCGACCCGGGCCCCTTCTGCACGCCGCGGCCATGGGGAGATTGCTGCGACAAGGCCTTCTGCAACAAGATGAACCCGCCGACCTGCCGCTGCATGGACGAGGTGAAGGAGTGCGCCGACGCGTGCAAGGATTGCCAGCGCGTGGAGTCGTCGGAGCCGCCTCGCTACGTCTGCAAGGACCGCTTCACCGGCCATCCCGGCCCCGTGTGCAAACCCCGAGCGGAGAACTAG
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| Protein seq | MSNTTMATSTILLFLLAGLAAAHGDGDTTIRLPSDGAKASRPRAAKPWDCCDNIEISRLMIYPPLYRCNDEVKQCAAACKECVEAPGGDFNGGAFVCSDWFSTVDPGPKCTAALDGLSMERPWKCCDNIKRLPTKPDPPQWRCNDELEPSQCTAACKSCREAPGPFPGKLICEDIYWGADPGPFCTPRPWGDCCDKAFCNKMNPPTCRCMDEVKECADACKDCQRVESSEPPRYVCKDRFTGHPGPVCKPRAEN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.210794 | 0.214210 | 0.982963 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124401 | RBH | 0.344258 | 0.351745 | 4.217262 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03340 | RBH | 3.602529 | 2.913744 | 2.015415 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0124401 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001800 | RBH | 0.081395 | 20.215199 | 11.167740 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001680 | RBH | 0.523617 | 46.362495 | 2.390316 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001800 | RBH | 0.090220 | 57.100716 | 3.542181 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001720 | RBH | 0.045831 | 5.387804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001800 | RBH | 0.897031 | 236.255600 | 7.130720 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022500 | SBH | 12.2048265 | 23.5406925 | 17.7103855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001730 | RBH | 0.0 | 4.754098 | 1.083678 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022400 | RBH | 49.8735095 | 54.807066 | 2.167613 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001620 | RBH | 0.0 | 1.188425 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001800 | RBH | 0.000000 | 83.186020 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001840 | RBH | 1.380279 | 212.897156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001800 | RBH | 0.000000 | 4.055514 | 2.494042 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001700 | RBH | 0.0 | 63.129677 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001890 | RBH | 0.0 | 93.944710 | 4.002547 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001760 | RBH | 0.0 | 75.982666 | 12.422457 |
