Variation ID: Basmati1_MH63RS3_DEL0512430

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
DEL
Os cB: Basmati1 | Basmati1
Os XI-adm: Minghui 63 | MH63RS3
Chr05
9810834
9813811
SV Length:
Query Start:
Query End:
Allele sv Count:
2986 bp
7462862
7465847
22
Gene_id Chromosome Start End
OsMH63_05G0111800 Chr05 7461935 7463374
OsMH63_05G0111900 Chr05 7465832 7468475
SV_id Chromosome ref_start ref_end query_start query_end length
Basmati1_117534_DEL0512770 Chr05 9810834 9813811 7197681 7200663 2983
Basmati1_125827_DEL0511930 Chr05 9810834 9813811 7284939 7287924 2986
Basmati1_127518_DEL0512040 Chr05 9810834 9813811 7378611 7381596 2986
Basmati1_127652_DEL0512460 Chr05 9810834 9813811 7328677 7331661 2985
Basmati1_132424_DEL0512090 Chr05 9810834 9813811 7309561 7312546 2986
Basmati1_D62_DEL0509400 Chr05 9810834 9813811 7248954 7251939 2986
Basmati1_FH838_DEL0511570 Chr05 9810834 9813811 7542819 7545804 2986
Basmati1_FS32_DEL0511040 Chr05 9810834 9813811 7223626 7226611 2986
Basmati1_G46_DEL0512010 Chr05 9810834 9813811 7242724 7245709 2986
Basmati1_G630_DEL0511010 Chr05 9810834 9813811 7316665 7319649 2985
Basmati1_HZ_DEL0510250 Chr05 9810834 9813811 7461844 7464829 2986
Basmati1_J4155_DEL0510650 Chr05 9810834 9813811 7395303 7398288 2986
Basmati1_J4155S_DEL0510640 Chr05 9810834 9813811 7503236 7506221 2986
Basmati1_R498_DEL0511990 Chr05 9810834 9813811 7626276 7629261 2986
Basmati1_R9311_DEL0509830 Chr05 9810834 9813811 7253893 7256878 2986
Basmati1_S548_DEL0512420 Chr05 9810834 9813811 7379687 7382672 2986
Basmati1_Tumba_DEL0511670 Chr05 9810834 9813811 7616785 7619769 2985
Basmati1_WSSM_DEL0510740 Chr05 9810834 9813811 7452265 7455226 2962
Basmati1_XL628S_DEL0510630 Chr05 9810834 9813811 7351315 7354300 2986
Basmati1_Y3551_DEL0511190 Chr05 9810834 9813811 7388934 7391919 2986
Basmati1_YX1_DEL0511250 Chr05 9810834 9813811 7496119 7499104 2986
Basmati1_MH63RS3_DEL0512430 Chr05 9810834 9813811 7462862 7465847 2986

>Basmati1_MH63RS3_DEL0512430
TGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTGAACCCTCGTCCAGGAATCAGCCGAGGCACACAATAACAAATTGATAATAGAGTACAATTATTACTCTAATTAATAAGCGTATAAAATGTCATTACAGAGGTAGATAGTTCCTCTCAATCAATAAAGATCTAAGCAGCGGAAAATAAAATAAACGGCGCAAACGGCTCCACTCCATAGGCAGTTTGACCAGGGCTACACCTAATCCTCCACACCATCAGCTTCACTGTAGAACTCTTCCTCTGATGAATGATTGCAAGGTGAGTATATGATATACTCAGCAAGCCACGCAGCAAATATGCAAGTGCACAGGATAACAAAGGATGGCATAGTAGGGTTTCATTTGCAAAAGCAGCATTTAGCAAACATTTGAGAATTTAATAAAATAGTTAAGTAATTAAACAATATTAATCCAACGCTATACAACATACCCTGTTGTATAGGCCCAACCATTCTGAACAACCATCCCGGCTGCACAGTTCTATCTCCAAACCAGGAATATACCATTCCAAACCAGGAGCTAATCAAATTATTACCAATTAAAGCACCTTTTATTATGATGAGAAGGGTGAGACCAATCACGAAAGACATTGTTAGACCCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGATCAGAGGTGTACCACTGTACCCACAAGACACAACCCCACATCATGTCACCATGTGCCTCAATACCACCACGGTACCTCGGAAAGGAGTTGTGACAATACCCCTTGCATAACACAATCCACTGCAGCGCACCTTCCTGGATCATAATCACCCCCTTATAAACAAGGCATGGACTCCCCAGCGACCCCCGTGGGCTTATCTCCGCCACTTCTCAGTCTGGTGCCCCGCAATGAACCATGCTATACAAAAGATAAAGCCGTTGCCCACGCTGGCTTGTGGTTGGCACGGTTAATGTTTCACAACCGAAACTCGTGAACCGGTCCTTAATTGTCATGAGCACAACCATCAAAACCATGTGCTCACAACCCACCATTACCAGGTTTTAGTTGGCAAATAATTAATTAACAAATCACGATTGGCCATCGTGAACTATCATTAAGCCATCATTAAATTATAGTGATTCATAAGTTATCCCAATAGTGTGCTAATGTTTCTAAGCAGGGCTAAGCAATTATATCTAATACATCTAGTTGAACCAACATATAGAGCTCAACTAGTCAAGTTATAATAACCCAAGGTATCAAGGAATAAGGTAATCAAGAACAAAAGGGCTATAACAAACAATAGGTTAATTCCACCCAATGACATTCGAAAATAAATGCAATAGTTGAAAAGAAACAATAGCTTTAAATAGGATCAACATGCTCAAAGGGTTGTTTGGGATCTGTGTGACTTGCCTTGCTGGCCTTGGAACTCTTCAAACTCTTCTCCGGCGAAAACGGACTCTCCGGAAACGACGGAATCTAAGCAGAAAGAAGCAAAATCACCAAAACAGCACATAAACAAGCATGAACAGTACATGTGGATATTTTTAACATGTAGATCTCAATTTTAGAAAAATTTAGAGACTTAAACCAACTAAATCGGAGCTAAGATGAATTAGTTATGAATTTTTAAAAGATTAAATCGGATTAAAACACTTAAATTGATTTTGATTGAATTATGACGCAATAATGAATTATTTTTGAAAAGGAAAAGAGGATTTATTGCGTCAGCGGCTAGGGTTTCGGTGGACCGGACGCACGGGCGACGGCTCACGCGAACGGACGGCCGAGATCGACTTGATCCAAAACGGACGGCCGAGATCGAACGGTCCACGACCGGCTCACAGCGAACGGCCCCGATGACGTCGGCGATGACGTCACCACCGGCGGCGGCGGCTCGGGCTTGCATGCTCGCCGGCGAACGACGGCACGGCGGCGCGAACGGAAGGCACCAACAGGTAGAGCGCAATGCGGCGAACTCACCGGTGACCAAAAGAGCGGCGGAAGATCAACAGACGGCGACGGCGACGAGGAGGAAGCGGCGGCAAACTTCGGGTCGACGGCGGCGACGGTGCTCCGGCGGTCTTCGGCGGCGGCGAAGGAGCGGACGAGAACGGCGGCAACTTGGCGATCACGACGGTGGCCTTGCCGAGCGATGATGACGACCGAGACGGCGGCGGCGCACGGCTGGAGCGACGGCTACGACGGCGGCGCTAGGTTGCACGGCGCTAGAACTCTTCCGGCGACGAGAGGCGAAGGCGAAGGTGGCGACGGGTAGAGGAGACACCGGGGAACCTTTTAAAGGGGCTCGGAGGCGACGGCGAAGGCCCACGGCGACTGGCGACGAGAAGGAAGGTTTAGGGTTCGGAGGAGAGAGACGAATCCGATTCGAACTCGATTCCAACGATTTCCAAAACGAATTAGCCGATGTTTCCAAAAGAGAAAAGGTAGAGGAAATCCCGGAGATTGTTTCCCCTCTATCAATTCGGCCGGAAACGGAAAGGATCGATCGAATTTGGAAGGGAACGGCGGCGGCGCGAAACTAGGGTTTCGGGCGGCGGCGGCCGGAGATTGACGACGACCCTGACAGGTGGGCCCCACCTGTCAGCGGGCGGATGCGCGCGCGCGCGGCGGCGGACTGGGCCGGACTGGGCCGAGGAGAGAGAGAGAGCGGTTTTGGGCCGACTTTCGGCCCAAAGCCAAAAGAGACTTTTTAAAACCTTTTTCAATTTAAATTATTCATGAAATGCAATTCCATTTATTAAAAATACTTCCTTAGCTCAAATAAATCCCAGAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCCATTTTATATTGGAATTTATTAATTAAAAAATTAGATCTTCTCTTCAAGACTTTTAAAATTATTTCTAAAAATTCCAATTAAACAACCATTTATATATTTTGAATTTTTAGGGTGTGACAAA

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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