Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_J4155_DEL0510650

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr05

9810834

9813811

SV Length:

Query Start:

Query End:

Allele sv Count:

2986 bp

7395303

7398288

22 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_117534_DEL0512770	Chr05	9810834	9813811	7197681	7200663	2983
Basmati1_125827_DEL0511930	Chr05	9810834	9813811	7284939	7287924	2986
Basmati1_127518_DEL0512040	Chr05	9810834	9813811	7378611	7381596	2986
Basmati1_127652_DEL0512460	Chr05	9810834	9813811	7328677	7331661	2985
Basmati1_132424_DEL0512090	Chr05	9810834	9813811	7309561	7312546	2986
Basmati1_D62_DEL0509400	Chr05	9810834	9813811	7248954	7251939	2986
Basmati1_FH838_DEL0511570	Chr05	9810834	9813811	7542819	7545804	2986
Basmati1_FS32_DEL0511040	Chr05	9810834	9813811	7223626	7226611	2986
Basmati1_G46_DEL0512010	Chr05	9810834	9813811	7242724	7245709	2986
Basmati1_G630_DEL0511010	Chr05	9810834	9813811	7316665	7319649	2985
Basmati1_HZ_DEL0510250	Chr05	9810834	9813811	7461844	7464829	2986
Basmati1_J4155_DEL0510650	Chr05	9810834	9813811	7395303	7398288	2986
Basmati1_J4155S_DEL0510640	Chr05	9810834	9813811	7503236	7506221	2986
Basmati1_R498_DEL0511990	Chr05	9810834	9813811	7626276	7629261	2986
Basmati1_R9311_DEL0509830	Chr05	9810834	9813811	7253893	7256878	2986
Basmati1_S548_DEL0512420	Chr05	9810834	9813811	7379687	7382672	2986
Basmati1_Tumba_DEL0511670	Chr05	9810834	9813811	7616785	7619769	2985
Basmati1_WSSM_DEL0510740	Chr05	9810834	9813811	7452265	7455226	2962
Basmati1_XL628S_DEL0510630	Chr05	9810834	9813811	7351315	7354300	2986
Basmati1_Y3551_DEL0511190	Chr05	9810834	9813811	7388934	7391919	2986
Basmati1_YX1_DEL0511250	Chr05	9810834	9813811	7496119	7499104	2986
Basmati1_MH63RS3_DEL0512430	Chr05	9810834	9813811	7462862	7465847	2986

>Basmati1_J4155_DEL0510650
TGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTGAACCCTCGTCCAGGAATCAGCCGAGGCACACAATAACAAATTGATAATAGAGTACAATTATTACTCTAATTAATAAGCGTATAAAATGTCATTACAGAGGTAGATAGTTCCTCTCAATCAATAAAGATCTAAGCAGCGGAAAATAAAATAAACGGCGCAAACGGCTCCACTCCATAGGCAGTTTGACCAGGGCTACACCTAATCCTCCACACCATCAGCTTCACTGTAGAACTCTTCCTCTGATGAATGATTGCAAGGTGAGTATATGATATACTCAGCAAGCCACGCAGCAAATATGCAAGTGCACAGGATAACAAAGGATGGCATAGTAGGGTTTCATTTGCAAAAGCAGCATTTAGCAAACATTTGAGAATTTAATAAAATAGTTAAGTAATTAAACAATATTAATCCAACGCTATACAACATACCCTGTTGTATAGGCCCAACCATTCTGAACAACCATCCCGGCTGCACAGTTCTATCTCCAAACCAGGAATATACCATTCCAAACCAGGAGCTAATCAAATTATTACCAATTAAAGCACCTTTTATTATGATGAGAAGGGTGAGACCAATCACGAAAGACATTGTTAGACCCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGATCAGAGGTGTACCACTGTACCCACAAGACACAACCCCACATCATGTCACCATGTGCCTCAATACCACCACGGTACCTCGGAAAGGAGTTGTGACAATACCCCTTGCATAACACAATCCACTGCAGCGCACCTTCCTGGATCATAATCACCCCCTTATAAACAAGGCATGGACTCCCCAGCGACCCCCGTGGGCTTATCTCCGCCACTTCTCAGTCTGGTGCCCCGCAATGAACCATGCTATACAAAAGATAAAGCCGTTGCCCACGCTGGCTTGTGGTTGGCACGGTTAATGTTTCACAACCGAAACTCGTGAACCGGTCCTTAATTGTCATGAGCACAACCATCAAAACCATGTGCTCACAACCCACCATTACCAGGTTTTAGTTGGCAAATAATTAATTAACAAATCACGATTGGCCATCGTGAACTATCATTAAGCCATCATTAAATTATAGTGATTCATAAGTTATCCCAATAGTGTGCTAATGTTTCTAAGCAGGGCTAAGCAATTATATCTAATACATCTAGTTGAACCAACATATAGAGCTCAACTAGTCAAGTTATAATAACCCAAGGTATCAAGGAATAAGGTAATCAAGAACAAAAGGGCTATAACAAACAATAGGTTAATTCCACCCAATGACATTCGAAAATAAATGCAATAGTTGAAAAGAAACAATAGCTTTAAATAGGATCAACATGCTCAAAGGGTTGTTTGGGATCTGTGTGACTTGCCTTGCTGGCCTTGGAACTCTTCAAACTCTTCTCCGGCGAAAACGGACTCTCCGGAAACGACGGAATCTAAGCAGAAAGAAGCAAAATCACCAAAACAGCACATAAACAAGCATGAACAGTACATGTGGATATTTTTAACATGTAGATCTCAATTTTAGAAAAATTTAGAGACTTAAACCAACTAAATCGGAGCTAAGATGAATTAGTTATGAATTTTTAAAAGATTAAATCGGATTAAAACACTTAAATTGATTTTGATTGAATTATGACGCAATAATGAATTATTTTTGAAAAGGAAAAGAGGATTTATTGCGTCAGCGGCTAGGGTTTCGGTGGACCGGACGCACGGGCGACGGCTCACGCGAACGGACGGCCGAGATCGACTTGATCCAAAACGGACGGCCGAGATCGAACGGTCCACGACCGGCTCACAGCGAACGGCCCCGATGACGTCGGCGATGACGTCACCACCGGCGGCGGCGGCTCGGGCTTGCATGCTCGCCGGCGAACGACGGCACGGCGGCGCGAACGGAAGGCACCAACAGGTAGAGCGCAATGCGGCGAACTCACCGGTGACCAAAAGAGCGGCGGAAGATCAACAGACGGCGACGGCGACGAGGAGGAAGCGGCGGCAAACTTCGGGTCGACGGCGGCGACGGTGCTCCGGCGGTCTTCGGCGGCGGCGAAGGAGCGGACGAGAACGGCGGCAACTTGGCGATCACGACGGTGGCCTTGCCGAGCGATGATGACGACCGAGACGGCGGCGGCGCACGGCTGGAGCGACGGCTACGACGGCGGCGCTAGGTTGCACGGCGCTAGAACTCTTCCGGCGACGAGAGGCGAAGGCGAAGGTGGCGACGGGTAGAGGAGACACCGGGGAACCTTTTAAAGGGGCTCGGAGGCGACGGCGAAGGCCCACGGCGACTGGCGACGAGAAGGAAGGTTTAGGGTTCGGAGGAGAGAGACGAATCCGATTCGAACTCGATTCCAACGATTTCCAAAACGAATTAGCCGATGTTTCCAAAAGAGAAAAGGTAGAGGAAATCCCGGAGATTGTTTCCCCTCTATCAATTCGGCCGGAAACGGAAAGGATCGATCGAATTTGGAAGGGAACGGCGGCGGCGCGAAACTAGGGTTTCGGGCGGCGGCGGCCGGAGATTGACGACGACCCTGACAGGTGGGCCCCACCTGTCAGCGGGCGGATGCGCGCGCGCGCGGCGGCGGACTGGGCCGGACTGGGCCGAGGAGAGAGAGAGAGCGGTTTTGGGCCGACTTTCGGCCCAAAGCCAAAAGAGACTTTTTAAAACCTTTTTCAATTTAAATTATTCATGAAATGCAATTCCATTTATTAAAAATACTTCCTTAGCTCAAATAAATCCCAGAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCCATTTTATATTGGAATTTATTAATTAAAAAATTAGATCTTCTCTTCAAGACTTTTAAAATTATTTCTAAAAATTCCAATTAAACAACCATTTATATATTTTGAATTTTTAGGGTGTGACAAA