Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_04G0318800 | OGI:04063180 | 35/50 | Minghui 63 | MH63RS3 | HZAU | Chr04:21912976-21915089 | ||||||||
| Gene Symbol | - | ||||||||||
| Mutant | Rice-GainFun(22NBN54,22NBI95,22NBI38,) | ||||||||||
| Stuctural Variations | - |
||||||||||
| DNA seq | CTACACTTTTCCTACTTTTCCTACAAATCAAAGGGACCATTACTAGTTCTGATTTGATCCTTCTATTTAGCAAAGCTCTTTGTTGCAATAGTTTCAGAATCACCGATACCGATGTCATCTTTCATAAAAAGACAACTGAAGCGGCAGAAGGAAGTCGGTGGCATCAAATGCAACCAAAAACAGAACAGATTCAAAGGGGTCATCCAGGCCCAGGAGACAGAGAGTTTGCAGAAGACCACTACTACTAAAAATTGCAGTTTGAAAGCCTTAAAAATACGAACAGCACAATAGATCAATTTGGGCTAAGGTTCAACCGTTTGCTGAAATAAGTTGTCCAATAACGGAGAATCACTATATAAAGCTTATACAGAACATAGTAACTGTAAGCACTGCGGTTCCAGTTGATATATATCCTGTTTTCTAACAAGCGAAGAGGGTCGTCTGAATCAAATCAGCAACATCATAACTGGTGGCTCTCTTCACTCTCCTGGGGCAGAGACACCTTGCTTCAGTTTTTCCCTCTTCATCTTCTTCTTCGAGACTGGCTTCTTTTTGCGAGGAGGAAGCGTCTTCTGAGCGTACACATAGAGAGCGTAGTTCCCGACAAAGAAAAGCAGCAGGAAGGTCGCGACCACAATCAGGACTATCATTCCAGGGTTCAGTCCCTTGTTGACCTCCTCAATGACTACATTGTTCTGAAGACCAGAAAACAAATCTATCAAGCACTATGCATGACAAAAGGGCACTGCAATTTAAATGTATGTGACTTCTTTATCGAAAAAATACTATGAGGCTTGCAGGGTTAGAAGAAGTTAACCCTTCCATAGGAGTATATGTTACAAGTTACTAGACAGATAGAGCCAGAGCAGAGATATCTGTGGACATGGATGAGTCTGCACATATTGCCATGTATAGATCTCCATACACAGATAATTCGAAAGCTAGATAACAATTATTTGTACTGTATAGTCACCCACATCTGTAGTTCTGTACAGTTTGATCACAGCACAAAATAAAGCTTATTACTAAGGATTGCATGTTTTCAACACTAGCAACTAGCCCATCCAAGAGTGGCCAAAACTAAATGGAACATGATAGATAAAGTGAAGTGGTCTGCCTAGAATTACCATTTGCATAAGATACACAGGATTGCTATTAAACATATGCAGTAGACATATACAAGGTTGGTAGTAATCACATACAAGGTTGAACAGAGGGAAATGGGATGGCAGTGCATAACTGCATATATATATTCATTGAAAACAGCAGCAATCTATGTCAACATTCAATTTCAGCATATTTACAGGATAAAAAATATTCAAAATAGTGAACAAACAATGTGGACTTGATAACTGAACAAAAAATGAACTATTGGAATTTGGAAAGCGCAAAGTTCGCGATATAACTTGATTCAAAAATTAATTTAAGTTTAAGAAACTAAAAGATCAAGTGTACATCATGGACATCATGGTAAGTAATACTCCCTAATGAATGACCACCGAATGTATGACCATGCAAAGACTACTGCAATAATCCGACAGATCTAACCCTACTCATAAAAAAAGCAACAAGTGCGTGAATCCATTGGCACTACCATATCAACGGAACAAAAGAAGTATAAGAAGCCCGTAAGTTCCTTACCGCAGAGTCCGCGAACTGATCCGCCATGGCTGACCGGGACCAAACACCTGCAACTCTGGATCCAACGATGGATCAAACTCTGGCGAAAAAAGAAAAAGAAAAAGAGGAGCAATTCTTAATCGAGAAGGGGTTGTATCAATCTCCACCAAACCTCAATCCCTACCTCTCCTTTTTTAGATATTTTATTTAGCCTACGGCAGCTGCTGCACTATTCCGCTGTTCGTGGCCGATCGATCGTCGGGTCTCACCCTCCCGCTTACGGGATTCGGTTAAGGAGTTCGATGATCTGATAGGATTGGAAGGTGCGAGTGAGGAATACTACTGAAATTTTTGGGGGAGTTCTGAGAGACGGCAGGACGAGGATTCGAGCGAGGAGGAGGGGATCGAAGGGGAAGACAACAATATATTTGGGCAGATGACCCCACCCAGCAGATGGTCAGACGGTGCATGTGTCAAAATGGGACAAAATAAAC
More
|
||||||||||
| CDS seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
||||||||||
| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
||||||||||
| Function | DNA-binding protein S1FA2 [UniProtKB/Swiss-Prot:Q7XLX6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_04G0318800 | OsMH63_04T0318800-mRNA-1 | Chr04 | 21912976 | 21915089 | - | maker | ||
| CDS seq | ATGGCGGATCAGTTCGCGGACTCTGCGAACAATGTAGTCATTGAGGAGGTCAACAAGGGACTGAACCCTGGAATGATAGTCCTGATTGTGGTCGCGACCTTCCTGCTGCTTTTCTTTGTCGGGAACTACGCTCTCTATGTGTACGCTCAGAAGACGCTTCCTCCTCGCAAAAAGAAGCCAGTCTCGAAGAAGAAGATGAAGAGGGAAAAACTGAAGCAAGGTGTCTCTGCCCCAGGAGAGTGA
More
|
|||||||
| Protein seq | MADQFADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREKLKQGVSAPGE |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 8.5416895 | 21.770871 | 27.232099 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0408700 | RBH | 5.825375 | 2.904997 | 21.569109 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g33440 | RBH | 2.810460 | 1.707054 | 5.560663 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0408700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0012350 | RBH | 2.092329 | 100.913033 | 30.746635 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013170 | SBH | 1.663235 | 25.212797 | 21.374359 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0012880 | SBH | 11.276484 | 114.519402 | 83.443199 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0012500 | SBH | 1.172246 | 4.197772 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0012830 | SBH | 64.807030 | 113.732841 | 129.961197 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0011740 | SBH | 1.438176 | 13.881351 | 9.928241 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0315700 | RBH | 8.168338 | 15.5865085 | 19.565709 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0012320 | SBH | 1.207969 | 1.050883 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0011940 | SBH | 6.247502 | 48.935226 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0011970 | SBH | 20.176132 | 207.476059 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0012520 | SBH | 4.040506 | 8.355080 | 13.800089 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0012750 | SBH | 2.058736 | 50.088398 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G011880 | SBH | 3.493813 | 37.833382 | 26.254240 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0011900 | RBH | 4.816360 | 156.067032 | 64.483360 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g15860 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0173000 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0167600 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0156300 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0168200 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406926800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0415847800.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_015792 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0413415600.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0415214600.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0407734600.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0408427800.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0410938400.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0407721600.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0407687200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406846600.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0407918000.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0415016600.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0408667600.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0408545000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0409146800.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406918600.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406905200.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0408381000.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0408517000.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0408255000.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0419381600.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0411058600.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406819200.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406852800.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0408082000.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0407849600.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0411688600.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0406983500.01 | RBH | None | None | None |
