Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsMH63_04G0037800 OGI:04007340 | 50/50 Minghui 63 | MH63RS3 | HZAU Chr04:2397617-2401108
Gene Symbol OsCBSX5
Mutant -
Stuctural Variations

Basmati1_MH63RS3_DEL0406100,128077_MH63RS3_INS0404580,127652_MH63RS3_INS0404060,R9311_MH63RS3_INS0403730,CN1_MH63RS3_INS0405200,DG_MH63RS3_INS0403820,127518_MH63RS3_INS0406130,127518_MH63RS3_DEL0406140,XL628S_MH63RS3_INS0406520,IR64_MH63RS3_INS0403190,HZ_MH63RS3_INS0403870,125619_MH63RS3_INS0404250,Tumba_MH63RS3_INS0403380,132424_MH63RS3_INS0404090,WSSM_MH63RS3_INS0403690,LK638S_MH63RS3_INS0402300,G8_MH63RS3_INS0403760,TM_MH63RS3_INS0402970,127564_MH63RS3_INS0405100,117534_MH63RS3_INS0405450,132278_MH63RS3_INS0404960,G46_MH63RS3_INS0405150,FS32_MH63RS3_INS0404390,117425_MH63RS3_INS0405680,YX1_MH63RS3_INS0403670,G630_MH63RS3_INS0405080,D62_MH63RS3_INS0406810,OglaRS2_MH63RS3_INS0405680,127742_MH63RS3_INS0403910,125827_MH63RS3_INS0403990,

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DNA seq

AAACCAACGAGAATATTACCGAGTGACCTCGTTTGCACTGATTTTATAACTTGGGAGACGGTTGTATCTGAACGGACGAAAATCGACGACAAATTGAGGGACCCTATTGTGAACTTATTCACTGAACTTTTGCACTACTGTGCCTTCGGCTAAAGCCTGACGGATCTGTTCAGACTTTAGAACTCTGAAGATATCCTCTACTCCCGAAGGCCCAGAACAGAAGTGCAGACAAAAGAGTGACAAATTGAGCGTTCAGCAATCTAACTAACCAAGATCACAAACCCCAGCACACTAAGGTACATAGAAAGGCTTGAGCACTTCCAGATTTTACAGCTAGAATTAATGTACAAGAGCAACGCCCCGACAGCCTACGAAGGCATCGATATCTACACAAGGAGCATGTTTATTTACTGATATTATTAACTGGTATCTTACTACACCTTGCTGGCCTCCAAAGCCTTGAATACGTCCGTGCGAGTGACGATCCCTGCTTGTAAGTGAGTAAAAAAAAAAAGTCCAGGTAAGTCATGTTTTTACATTTATAATGAAGGGCAGGAATCATTTGGAATTCATGCATTCGCACCATAACGAAAACCAGGATTCTGAAAAGTGAAAACATACGAAAATCTGGCATTATTAGTGATGGCAACAGTTATGGGCCGTACGACCAGTTTATCGCTGTCTTTCGGCGGAATCATGATGAGGGGAACTAAAATTTTCTGGTTGTAGAATGTTTGAGAACCACAAAGGTCAAGAAAATGGACTTAAACGCATTTCAGAAGGCCGTTGAGGATGATCAAACTCAAATCACCCCACCAGGGAGAGAAGACTGCTTCACAGTGGCAGTAGGGACTCATGGTAGAGATATAATCTTAGCAAAGCTAAATTGCAGCATGTATCAATTACGTCAAATAAAAAAAGTACAGGTAAATGGCTACCCATTTTTATTAAAATATCATAGCAATACCAAAAAGAGAAAGGTCGTCGTACCGATCACTTGCTGTTGTTCATTCACGACTGGTATCCTGTGAACCTTCTCCTTGAGCATCAGAGCAGCAGCTTCTGCTCATATAGTCAGTCAACAGGAAGAAAATTAGCAAAGGGTCAGAACCAGTTCATATTGATATTTCTCTAGTAACTGTAAACAAAGGGAGTCATAAGTTACCCAATACAGTCTTCTCGGGTGTCAGAGTTATAGCAGGAGATGACATGACTTCTCCAACAGTTGAGTCCAACTGCATCATGAGCAGAAAGCATGGGGAATAATGATCAGAATCATCAGGAATCCTTACAGAAGCCAATGTAATCATGAAGTTAATGCTGAAGATCTTGGGTCACAAAACTTTCACTATTTATTATACCTACCATACAAACATATTGCATTTAACAAGTTCTGATAACATTTCATTTTGTTCAGGGCTTTGAGAATGACAGTGTGAATCAATTATCTTTGTTATATTTGGAAAAATCTGGTTTGTAGTTTAGTGAATCAAATCAATAAAGATACAATTTCTGAAGTAAGAGCCATGTCCTCTCTCTGAAGAAGTATGTGCCACGCCCGCTCTCTGAAGAAGTACGCACCGAGTCTACTGAGATAATGGAGTGATCCATATAATGCCATAGGATCAGAAGGTAGAGGCCTCCTCCCTCCCTCCTTCTCCTTGTGAAGGTAGTGGTCTTATACAAGATAGTTTCTTAATAATAAGTTGTAAAGTTGAAATTTGGTCATGATATTTAGCATAAATCTCAATAGGCCTACATCATGAGTTGACAACTATAATTGTTCAAGTGAAGTATTTGGTGATAATTACTGCTCAGAAACCATGTCAGAGTTAGAAAGGGAGTAAGAATGTTGATATTCACAAATATCATAGCATACACAATTTGTGTCATAGATCTATTTCACAGTTCGTGTTTAGCTCATACATTTTTCTGCACTTCAATATTCAATTTGCGGGATGTGCTCATATGGTTACAGGAACTACTTCCGACGATCCGGTTACTACCATAACCAGCATTTTAGATGTAAAATTGATTCAGAGTATATTACTTATCACCCAATGTAGTCTGTAAAATATTGCAGTTATCATTGTCAACCCTTAACTTCACCGTGCTAGTTTTAGCTTGTCAACATTTAGACACATCAGGTTGTAACATATCAAGAAAAATCAGCACACGAGTTCAGTATACTTGTCATTGTCAGACATACATACATCGATTATAATTGATATGAACATGCAATGCACAACAGTTTGAGAAGTTGCGTAGCACATCATTTTGCATACCAAGTGCTAGCATCACAACAAAAGCAAGTAACACAAGATATGTGGGAAAATATGTAGTGTGACCAAATATTAGTGGAAACTTGGAATGCAAAATAAACGTCTGACATTTGTCCACGTCATTACAGGTAAAATTATTTATTCTGGTAAAACTTTTACTTATGGGTTAATATAAATGTTTTACTCGCAGTGACAGTAGTTTCTAGGTTTCCATAATATATGTGGCTTTCACTACATATTTTCCCAAGATATGTATAATAAGATATGATTTAATTCCACAATTAGCAGTTTAATTAACAAATTCGCAATTGCAATTGCAAGGAGGAGGAAGAAGAGCACAGACCCCATTGGATGCCTTGGCCTTGTCCTTCTTGGAGACGACGCCGATGCACCTCCCCTCCTCGTCGAGCACCGGCAGGCCGGACTGTGCGCCGAAGAAGGCGTCGATGTCCGCCAGCCTCTGGTCCGCCATGGCCACCTGCACGGGCCGCGACATGACCTCCCCGAGCTTCGCCGTCGGGCTCATCTGCTCATCCGCCCGCGAAAGAAAACCATCAGATCCAAGAACTCCTCAAGAAGCGAGATCGAGGTGGCGCGCGCGCAAATCAAACGAAACCTGGTCGGTGGTGACGATCTGCGACTCGAGGTAGGCGCGGAGGTCGGCGTAGCTGAGGAGGGAGAAGTTCTCCGGCCACTCGCCCGAGAGGATCCCCTCCGGGTACTCGTCGATGGCCGGGCGCAGGTCACCCACCGCCGCGCCCGCCGCCACCATCCGCCGCCGCGGAGCACGCCACGCCGCCACGCCGCCGTTCCGCGCCACGTCGCTCGAAGACAGCCGCGGCGGCGCGACGGGCCGGAGCGCGAGGCCGCCCTGGACGGCGGCGGCAGCGGCGGCGAAGGGCGAGGACGCCATGGAGCAGCACGAGACGAGGTGCACGAGTCGACTCGCCGCTGGCGTGGACAGCGTCTGTGCGTCGTTCGTTCTCGCTCGTTGGCTCGCGGCGCCCACTAGAAGAGCGTTGGAGTGGAGTGAAGTGTGGAGAGTGGTGTGGAAATTTCTGGAAGAGTGGAAGGGTGTGGGGAGGGTGGGGCCCACATGCAGAGGGACGGACGGACGGCGTGCGGTTGGGTCGCTGTCCTGTGTGGCGTTTAGTGGGGGTTTGGTTGTTGGTAGGCAATAGGCAGACGCTGCTCGTTTCTCATGTCATGG

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CDS seq

MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV

Protein seq

MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV

Function Uncharacterized protein MJ1232 [UniProtKB/Swiss-Prot:Q58629]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsMH63_04G0037800 OsMH63_04T0037800.1 Chr04 2397617 2401108 - maker
CDS seq

ATGGCGTCCTCGCCCTTCGCCGCCGCTGCCGCCGCCGTCCAGGGCGGCCTCGCGCTCCGGCCCGTCGCGCCGCCGCGGCTGTCTTCGAGCGACGTGGCGCGGAACGGCGGCGTGGCGGCGTGGCGTGCTCCGCGGCGGCGGATGGTGGCGGCGGGCGCGGCGGTGGGTGACCTGCGCCCGGCCATCGACGAGTACCCGGAGGGGATCCTCTCGGGCGAGTGGCCGGAGAACTTCTCCCTCCTCAGCTACGCCGACCTCCGCGCCTACCTCGAGTCGCAGATCGTCACCACCGACCAGATGAGCCCGACGGCGAAGCTCGGGGAGGTCATGTCGCGGCCCGTGCAGGTGGCCATGGCGGACCAGAGGCTGGCGGACATCGACGCCTTCTTCGGCGCACAGTCCGGCCTGCCGGTGCTCGACGAGGAGGGGAGGTGCATCGGCGTCGTCTCCAAGAAGGACAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGAAGACTGTATTGGAAGCTGCTGCTCTGATGCTCAAGGAGAAGGTTCACAGGATACCAGTCGTGAATGAACAACAGCAAGTGATCGGGATCGTCACTCGCACGGACGTATTCAAGGCTTTGGAGGCCAGCAAGGTGTAG

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Protein seq

MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 11.12218 5.739369 56.809774

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0136700 RBH 1.519365 2.129524 15.825553
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g05010 RBH 0.820955 1.423204 3.423542
Nipponbare | IRGSP 1.0 | RAP-db Os04g0136700 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_04g0001520 RBH 1.937720 2.016760 6.956452
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_04g0001510 RBH 1.740646 1.589005 1.845762
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_04g0001470 RBH 3.690643 11.151546 12.094501
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_04g0001560 RBH 0.394285 0.119262 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_04g0001550 RBH 24.844368 11.575408 21.125566
Minghui 63 | MH63RS3 | HZAU NA NA NA NA NA
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_04g0001770 RBH 0.595873 0.321438 1.188719
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_04G0033000 RBH 13.3072165 3.3462035 12.2004135
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_04g0001520 RBH 1.745135 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_04g0001780 RBH 1.119551 20.068306 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_04g0001600 RBH 26.932516 22.648682 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_04g0001440 RBH 1.956187 0.000000 3.384567
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_04g0001600 RBH 1.214812 0.000000 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_04G001620 RBH 0.639281 2.545333 2.838629
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_04g0001600 RBH 0.895180 3.823072 15.988963
Os XI: R9311 | R9311 | AGIS R9311C04g14721 RBH None None None
Os XI-adm: HZ | HZ | PKU OsHZ_04g0019900 RBH None None None
Os XI-adm: J4155S | J4155S | PKU OsJ4155_04g0021200 RBH None None None
Os XI-adm: LK638S | LK638S | PKU OsLK638S_04g0021100 RBH None None None
Os XI-adm: XL628S | XL628S | PKU OsXL628S_04g0022400 RBH None None None
Os GJ-temp: 02428 | 02428 | SICAU Os02428G0406070800.01 RBH None None None
Os cB: Basmati1 | Basmati1 | SICAU OsBasmati1G0414048200.01 RBH None None None
Os O.glaberrima: Ogla | OglaRS2 | DIADE Oglab_014617 RBH None None None
Os XI-1A: CN1 | CN1 | SICAU OsCN1G0411677200.01 RBH None None None
Os XI-1A: D62 | D62 | SICAU OsD62G0413488000.01 RBH None None None
Os XI-1A: DG | DG | SICAU OsDGG0406723400.01 RBH None None None
Os GJ-temp: DHX2 | DHX2 | SICAU OsDHX2G0406180000.01 RBH None None None
Os XI-adm: FH838 | FH838 | SICAU OsFH838G0409003000.01 RBH None None None
Os XI-1A: FS32 | FS32 | SICAU OsFS32G0406721800.01 RBH None None None
Os XI-1A: G46 | G46 | SICAU OsG46G0406752200.01 RBH None None None
Os XI-adm: G630 | G630 | SICAU OsG630G0406029200.01 RBH None None None
Os XI-1B: G8 | G8 | SICAU OsG8G0406154400.01 RBH None None None
Os XI-1A: II32 | II32 | SICAU OsII32G0413191200.01 RBH None None None
Os XI-1B: J4155 | J4155 | SICAU OsJ4155G0406196000.01 RBH None None None
Os GJ-temp: Kosh | Kosh | SICAU OsKoshG0406287000.01 RBH None None None
Os GJ-temp: KY131 | KY131 | SICAU OsKY131G0406934200.01 RBH None None None
Os GJ-trp: Lemont | Lemont | SICAU OsLemontG0406091000.01 RBH None None None
Os GJ-adm: LJ | LJ | SICAU OsLJG0406074000.01 RBH None None None
Os GJ-sbtrp: NamRoo | NamRoo | SICAU OsNamRooG0406156400.01 RBH None None None
Os XI-1B: R498 | R498 | SICAU OsR498G0407526200.01 RBH None None None
Os XI-1B: R527 | R527 | SICAU OsR527G0407053400.01 RBH None None None
Os XI-1B: S548 | S548 | SICAU OsS548G0416689400.01 RBH None None None
Os XI-2: TM | TM | SICAU TMG0409355800.01 RBH None None None
Os XI-3: Tumba | Tumba | SICAU OsTumbaG0406024600.01 RBH None None None
Os XI-adm: WSSM | WSSM | SICAU OsWSSMG0406044400.01 RBH None None None
Os XI-1B: Y3551 | Y3551 | SICAU OsY3551G0406207800.01 RBH None None None
Os XI-1B: Y58S | Y58S | SICAU OsY58SG0409201900.01 RBH None None None
Os XI-adm: YX1 | YX1 | SICAU OsYX1G0410810500.01 RBH None None None
Os GJ-temp: ZH11 | ZH11 | SICAU OsZH11G0407820500.01 RBH None None None
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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