Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_04g0001770 | OGI:04007340 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr04:2297830-2300913 | ||||||||
| Gene Symbol | OsCBSX5 | ||||||||||
| DNA seq | GCAGACAAAAGAGTGACAAATTGAGCGTTCAGCAATCTAACTAACCAAGATCACAAACCCCAGCACACTAAGGTACATAGAAAGGCTTGAGCACTTCCAGATTTTACAGCTAGAATTAATGTACATGAGCAACGCCCCGACAGCCTACGAAGGCATCGATATCTACACAAGGAGCATGTTTATTTACTGATATTATTAACTGGTATCTTACTACACCTTGCTGGCCTCCAAAGCCTTGAATACGTCCGTGCGAGTGACGATCCCTGCTTGTAAGTGAGTAAAAAAAAAAAGTCCAGGTAAGTCATGTTTTTACATTTATAATGAAGGGCAGGAATCATTTGGAATTCATGCATTCGCACCATAACGAAAACCAGGATTCTGAAAAGTGAAAACATACGAAAATCTGGCATTATTAGTGATGGCAACAGTTATGGGCCGTACGACCAGTTTATCGCTGTCTTTCGGCGGAATCATGATGAGGGGAACTAAAATTTTCTGGTTGTAGAATGTTTGAGAACCACAAAGGTCAAGAAAATGGACTTAAACGCATTTCAGAAGGCCGTTGAGGATGATCAAACTCAAATCACCCCACCAGGGAGAGAAGACTGCTTCACAGTGGCAGTAGGGACTCATGGTAGAGATATAATCTTAGCAAAGCTAAATTGCAGCATGTATCAATTACGTCAAATAAAAAAAGTACAGGTAAATGGCTACCCATTTTTATTAAAATATCATAGCAATACCAAAAAGAGAAAGGTCGTCGTACCGATCACTTGCTGTTGTTCATTCACGACTGGTATCCTGTGAACCTTCTCCTTGAGCATAAGAGCAGCAGCTTCTGCTCATATAGTCAGTCAACAGGAAGAAAATTAGCAAAGGGTCAGAACCAGTTCATATTGATATTTCTCTAGTAACTGTAAACAAAGGGAGTCATAAGTTACCCAATACAGTCTTCTCGGGTGTCAGAGTTATAGCAGGAGATGACATGACTTCTCCAACAGTTGAGTCCAACTGCATCATGAGCAGAAAGCATGGGGAATAATGATCAGAATCATCAGGAATCCTTACAGAAGCCAATGTAATCATGAAGTTAATGCTGAAGATCTTGGGTCACAAAACTTTCACTATTTATTATACCTACCATACAAACATATTGCATTTAACAAGTTCTGATAACATTTCATTTTGTTCAGGGCTTTGAGAATGACAGTGTGAATCAATTATCTTTGTTATATTTGGAAAAATCTGGTTTGTAGTTTAGTGAATCAAATCAATAAAGATACAATTTCTGAAGTAAGAGCCATGTCCTCTCTCTGAAGAAGTATGTGCCACGCCCGCTCTCTGAAGAAGTACGCACCGAGTCTACTGAGATAATGGAGTGATCCATATAATGCCATAGGATCAGAAGGTAGAGGCCTCCTCCCTCCCTCCTTCTCCTTGTGAAGGTAGTGGTCTTATACAAGATAGTTTCTTAATAATAAGTTGTAAAGTTGAAATTTGGTCATGATATTTAGCATAAATCTCAATAGGCCTACATCATGAGTTGACAACTATAATTGTTCAAGTGAAGTATTTGGTGATAATTACTGCTCAGAAACCATGTCAGAGTTAGAAAGGGAGTAAGAATGTTGATATTCACAAATATCATAGCATACACAATTTGTGTCATAGATCTATTTCACAGTTCGTGTTTAGCTCATACATTTTTCTGCACTTCAATATTCAATTTGCGGGATGTGCTCATATGGTTACAGGAACTACTTCCGACGATCCGGTTACTACCATAACCAGCATTTTAGATGTAAAATTGATTCAGAGTATATTACTTATCACCCAATGTAGTCTGTAAAATATTGCAGTTATCATTGTCAACCCTTAACTTCACCGTGCTAGTTTTAGCTTGTCAACATTTAGACACATCAGGTTGTAACATATCAAGAAAAATCAGCACACGAGTTCAGTATACTTGTCATTGTCAGACATACATACATCGATTATAATTGATATGAACATGCAATGCACAACAGTTTGAGAAGTTGCGTAGCACATCATTTTGCATACCAAGTGCTAGCATCACAACAAAAGCAAGTAACACAAGATATGTGGGAAAATATGTAGTGTGACCAAATATTAGTGGAAACTTGGAATGCAAAATAAACGTCTGACATTTGTCCACGTCATTACAGGTAAAATTATTTATTCTGGTAAAACTTTTACTTATGGGTTAATATAAATGTTTTACTCGCAGTGACAGTAGTTTCTAGGTTTCCATAATATATGTGGCTTTCACTACATATTTTCCCAAGATATGTATAATAAGATATGATTTAATTCCACAATTAGCAGTTTAATTAACAAATTCGCAATTGCAATTGCAAGGAGGAGGAAGAAGAGCACAGACCCCATTGGATGCCTTGGCCTTGTCTTTCTTGGAGACGACGCCGATGCACCTCCCCTCCTCGTCGAGCACCGGCAGGCCGGACTGTGCGCCGAAGAAGGCGTCGATGTCCGCCAGCCTCTGGTCCGCCATGGCCACCTGCACGGGCCGCGACATGACCTCCCCGAGCTTCGCCGTCGGGCTCATCTGCTCATCCGCCCGCGAAAGAAAACCATCAGATCCAAGAACTCCTCAAGAAGCGAGATCGAGGTGGCGCGCGCGCAAATCAAACGAAACCTGGTCGGTGGTGACGATCTGCGACTCGAGGTAGGCGCGGAGGTCGGCGTAGCTGAGGAGGGAGAAGTTCTCCGGCCACTCGCCCGAGAGGATCCCCTCCGGGTACTCGTCGATGGCCGGGCGCAGGTCACCCACCGCCGCGCCCGCCGCCACCATCCGCCGCCGCGGAGCACGCCACGCCGCCACGCCGCCGTTCCGCGCCACGTCGCTCGAAGACAGCCGCGGCGGCGCGACGGGCCGGAGCGCGAGGCCGCCCTGGACGGCGGCGGCAGCGGCGGCGAAGGGCGAGGACGCCATGGAGCAGCACGAGACGAGGTGCACGAGTCGACTCGCCGCTGGCGTGGACAGCGTCTGTGCGTCGTTCGTTCTCGCTCGTTGGCTCGCGGCGCCCACTAGAAGAGCGTTGGAGT
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| CDS seq | ATGGCGTCCTCGCCCTTCGCCGCCGCTGCCGCCGCCGTCCAGGGCGGCCTCGCGCTCCGGCCCGTCGCGCCGCCGCGGCTGTCTTCGAGCGACGTGGCGCGGAACGGCGGCGTGGCGGCGTGGCGTGCTCCGCGGCGGCGGATGGTGGCGGCGGGCGCGGCGGTGGGTGACCTGCGCCCGGCCATCGACGAGTACCCGGAGGGGATCCTCTCGGGCGAGTGGCCGGAGAACTTCTCCCTCCTCAGCTACGCCGACCTCCGCGCCTACCTCGAGTCGCAGATCGTCACCACCGACCAGATGAGCCCGACGGCGAAGCTCGGGGAGGTCATGTCGCGGCCCGTGCAGGTGGCCATGGCGGACCAGAGGCTGGCGGACATCGACGCCTTCTTCGGCGCACAGTCCGGCCTGCCGGTGCTCGACGAGGAGGGGAGGTGCATCGGCGTCGTCTCCAAGAAAGACAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGAAGACTGTATTGGCAGAAGCTGCTGCTCTTATGCTCAAGGAGAAGGTTCACAGGATACCAGTCGTGAATGAACAACAGCAAGTGATCGGGATCGTCACTCGCACGGACGTATTCAAGGCTTTGGAGGCCAGCAAGGTGTAG
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| Protein seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLAEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_04g0001770 | OsIR64_04g0001770.01 | Chr04 | 2297830 | 2300913 | - | NAM | ||
| CDS seq | ATGGCGTCCTCGCCCTTCGCCGCCGCTGCCGCCGCCGTCCAGGGCGGCCTCGCGCTCCGGCCCGTCGCGCCGCCGCGGCTGTCTTCGAGCGACGTGGCGCGGAACGGCGGCGTGGCGGCGTGGCGTGCTCCGCGGCGGCGGATGGTGGCGGCGGGCGCGGCGGTGGGTGACCTGCGCCCGGCCATCGACGAGTACCCGGAGGGGATCCTCTCGGGCGAGTGGCCGGAGAACTTCTCCCTCCTCAGCTACGCCGACCTCCGCGCCTACCTCGAGTCGCAGATCGTCACCACCGACCAGATGAGCCCGACGGCGAAGCTCGGGGAGGTCATGTCGCGGCCCGTGCAGGTGGCCATGGCGGACCAGAGGCTGGCGGACATCGACGCCTTCTTCGGCGCACAGTCCGGCCTGCCGGTGCTCGACGAGGAGGGGAGGTGCATCGGCGTCGTCTCCAAGAAAGACAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGAAGACTGTATTGGAAGCTGCTGCTCTTATGCTCAAGGAGAAGGTTCACAGGATACCAGTCGTGAATGAACAACAGCAAGTGATCGGGATCGTCACTCGCACGGACGTATTCAAGGCTTTGGAGGCCAGCAAGGTGTAG
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| Protein seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_04g0001770 | OsIR64_04g0001770.02 | Chr04 | 2297852 | 2300913 | - | NAM | ||
| CDS seq | ATGGCGTCCTCGCCCTTCGCCGCCGCTGCCGCCGCCGTCCAGGGCGGCCTCGCGCTCCGGCCCGTCGCGCCGCCGCGGCTGTCTTCGAGCGACGTGGCGCGGAACGGCGGCGTGGCGGCGTGGCGTGCTCCGCGGCGGCGGATGGTGGCGGCGGGCGCGGCGGTGGGTGACCTGCGCCCGGCCATCGACGAGTACCCGGAGGGGATCCTCTCGGGCGAGTGGCCGGAGAACTTCTCCCTCCTCAGCTACGCCGACCTCCGCGCCTACCTCGAGTCGCAGATCGTCACCACCGACCAGATGAGCCCGACGGCGAAGCTCGGGGAGGTCATGTCGCGGCCCGTGCAGGTGGCCATGGCGGACCAGAGGCTGGCGGACATCGACGCCTTCTTCGGCGCACAGTCCGGCCTGCCGGTGCTCGACGAGGAGGGGAGGTGCATCGGCGTCGTCTCCAAGAAAGACAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGAAGACTGTATTGGCAGAAGCTGCTGCTCTTATGCTCAAGGAGAAGGTTCACAGGATACCAGTCGTGAATGAACAACAGCAAGTGATCGGGATCGTCACTCGCACGGACGTATTCAAGGCTTTGGAGGCCAGCAAGGTGTAG
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| Protein seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLAEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr04 | 2298667 | 2298771 | - | OsIR64_04g0001770.02 | OsIR64_04g0001770.02,OsIR64_04g0001770.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.595873 | 0.321438 | 1.188719 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0136700 | RBH | 1.519365 | 2.129524 | 15.825553 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05010 | RBH | 0.820955 | 1.423204 | 3.423542 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0136700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001520 | RBH | 1.937720 | 2.016760 | 6.956452 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001510 | RBH | 1.740646 | 1.589005 | 1.845762 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001470 | RBH | 3.690643 | 11.151546 | 12.094501 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001560 | RBH | 0.394285 | 0.119262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001550 | RBH | 24.844368 | 11.575408 | 21.125566 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0037800 | RBH | 11.12218 | 5.739369 | 56.809774 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0033000 | RBH | 13.3072165 | 3.3462035 | 12.2004135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001520 | RBH | 1.745135 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001780 | RBH | 1.119551 | 20.068306 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001600 | RBH | 26.932516 | 22.648682 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001440 | RBH | 1.956187 | 0.000000 | 3.384567 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001600 | RBH | 1.214812 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001620 | RBH | 0.639281 | 2.545333 | 2.838629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001600 | RBH | 0.895180 | 3.823072 | 15.988963 |
