Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsS548G0416689400.01 | OGI:04007340 | 50/50 | Os XI-1B: S548 | S548 | SICAU | Chr04:2392707-2395883 | ||||||||
| Gene Symbol | OsCBSX5 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | 117425_S548_INS0405840,Basmati1_S548_DEL0406030,CN1_S548_INS0405010,117534_S548_INS0405420,Tumba_S548_INS0403220,125827_S548_INS0403870,128077_S548_INS0404640,127652_S548_INS0404320,TM_S548_INS0402810,FS32_S548_INS0404170,YX1_S548_INS0403540,DG_S548_INS0403620,132278_S548_INS0404800,R9311_S548_INS0403630,HZ_S548_INS0403570,G46_S548_INS0405090,127518_S548_INS0406150,127518_S548_DEL0406160,D62_S548_INS0406550,127742_S548_INS0403610,G8_S548_INS0403550,XL628S_S548_INS0406070,WSSM_S548_INS0403410,125619_S548_INS0404100,LK638S_S548_INS0402120,G630_S548_INS0405080,132424_S548_INS0404090,127564_S548_INS0404900,IR64_S548_INS0403140,
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| DNA seq | CCGAGTGACCTCGTTTGCACTGATTTTATAACTTGGGAGACGGTTGTATCTGAACGGACGAAAATCGACGACAAATTGAGGGACCCTATTGTGAACTTATTCACTGAACTTTTGCACTACTGTGCCTTCGGCTAAAGCCTGACGGATCTGTTCAGACTTTAGAACTCTGAAGATATCCTCTACTCCCGAAGGCCCAGAACAGAAGTGCAGACAAAAGAGTGACAAATTGAGCGTTCAGCAATCTAACTAACCAAGATCACAAACCCCAGCACACTAAGGTACATAGAAAGGCTTGAGCACTTCCAGATTTTACAGCTAGAATTAATGTACAAGAGCAACGCCCCGACAGCCTACGAAGGCATCGATATCTACACAAGGAGCATGTTTATTTACTGATATTATTAACTGGTATCTTACTACACCTTGCTGGCCTCCAAAGCCTTGAATACGTCCGTGCGAGTGACGATCCCTGCTTGTAAGTGAGTAAAAAAAAAAAGTCCAGGTAAGTCATGTTTTTACATTTATAATGAAGGGCAGGAATCATTTGGAATTCATGCATTCGCACCATAACGAAAACCAGGATTCTGAAAAGTGAAAACATACGAAAATCTGGCATTATTAGTGATGGCAACAGTTATGGGCCGTACGACCAGTTTATCGCTGTCTTTCGGCGGAATCATGATGAGGGGAACTAAAATTTTCTGGTTGTAGAATGTTTGAGAACCACAAAGGTCAAGAAAATGGACTTAAACGCATTTCAGAAGGCCGTTGAGGATGATCAAACTCAAATCACCCCACCAGGGAGAGAAGACTGCTTCACAGTGGCAGTAGGGACTCATGGTAGAGATATAATCTTAGCAAAGCTAAATTGCAGCATGTATCAATTACGTCAAATAAAAAAAGTACAGGTAAATGGCTACCCATTTTTATTAAAATATCATAGCAATACCAAAAAGAGAAAGGTCGTCGTACCGATCACTTGCTGTTGTTCATTCACGACTGGTATCCTGTGAACCTTCTCCTTGAGCATCAGAGCAGCAGCTTCTGCTCATATAGTCAGTCAACAGGAAGAAAATTAGCAAAGGGTCAGAACCAGTTCATATTGATATTTCTCTAGTAACTGTAAACAAAGGGAGTCATAAGTTACCCAATACAGTCTTCTCGGGTGTCAGAGTTATAGCAGGAGATGACATGACTTCTCCAACAGTTGAGTCCAACTGCATCATGAGCAGAAAGCATGGGGAATAATGATCAGAATCATCAGGAATCCTTACAGAAGCCAATGTAATCATGAAGTTAATGCTGAAGATCTTGGGTCACAAAACTTTCACTATTTATTATACCTACCATACAAACATATTGCATTTAACAAGTTCTGATAACATTTCATTTTGTTCAGGGCTTTGAGAATGACAGTGTGAATCAATTATCTTTGTTATATTTGGAAAAATCTGGTTTGTAGTTTAGTGAATCAAATCAATAAAGATACAATTTCTGAAGTAAGAGCCATGTCCTCTCTCTGAAGAAGTATGTGCCACGCCCGCTCTCTGAAGAAGTACGCACCGAGTCTACTGAGATAATGGAGTGATCCATATAATGCCATAGGATCAGAAGGTAGAGGCCTCCTCCCTCCCTCCTTCTCCTTGTGAAGGTAGTGGTCTTATACAAGATAGTTTCTTAATAATAAGTTGTAAAGTTGAAATTTGGTCATGATATTTAGCATAAATCTCAATAGGCCTACATCATGAGTTGACAACTATAATTGTTCAAGTGAAGTATTTGGTGATAATTACTGCTCAGAAACCATGTCAGAGTTAGAAAGGGAGTAAGAATGTTGATATTCACAAATATCATAGCATACACAATTTGTGTCATAGATCTATTTCACAGTTCGTGTTTAGCTCATACATTTTTCTGCACTTCAATATTCAATTTGCGGGATGTGCTCATATGGTTACAGGAACTACTTCCGACGATCCGGTTACTACCATAACCAGCATTTTAGATGTAAAATTGATTCAGAGTATATTACTTATCACCCAATGTAGTCTGTAAAATATTGCAGTTATCATTGTCAACCCTTAACTTCACCGTGCTAGTTTTAGCTTGTCAACATTTAGACACATCAGGTTGTAACATATCAAGAAAAATCAGCACACGAGTTCAGTATACTTGTCATTGTCAGACATACATACATCGATTATAATTGATATGAACATGCAATGCACAACAGTTTGAGAAGTTGCGTAGCACATCATTTTGCATACCAAGTGCTAGCATCACAACAAAAGCAAGTAACACAAGATATGTGGGAAAATATGTAGTGTGACCAAATATTAGTGGAAACTTGGAATGCAAAATAAACGTCTGACATTTGTCCACGTCATTACAGGTAAAATTATTTATTCTGGTAAAACTTTTACTTATGGGTTAATATAAATGTTTTACTCGCAGTGACAGTAGTTTCTAGGTTTCCATAATATATGTGGCTTTCACTACATATTTTCCCAAGATATGTATAATAAGATATGATTTAATTCCACAATTAGCAGTTTAATTAACAAATTCGCAATTGCAATTGCAAGGAGGAGGAAGAAGAGCACAGACCCCATTGGATGCCTTGGCCTTGTCCTTCTTGGAGACGACGCCGATGCACCTCCCCTCCTCGTCGAGCACCGGCAGGCCGGACTGTGCGCCGAAGAAGGCGTCGATGTCCGCCAGCCTCTGGTCCGCCATGGCCACCTGCACGGGCCGCGACATGACCTCCCCGAGCTTCGCCGTCGGGCTCATCTGCTCATCCGCCCGCGAAAGAAAACCATCAGATCCAAGAACTCCTCAAGAAGCGAGATCGAGGTGGCGCGCGCGCAAATCAAACGAAACCTGGTCGGTGGTGACGATCTGCGACTCGAGGTAGGCGCGGAGGTCGGCGTAGCTGAGGAGGGAGAAGTTCTCCGGCCACTCGCCCGAGAGGATCCCCTCCGGGTACTCGTCGATGGCCGGGCGCAGGTCACCCACCGCCGCGCCCGCCGCCACCATCCGCCGCCGCGGAGCACGCCACGCCGCCACGCCGCCGTTCCGCGCCACGTCGCTCGAAGACAGCCGCGGCGGCGCGACGGGCCGGAGCGCGAGGCCGCCCTGGACGGCGGCGGCAGCGGCGGCGAAGGGCGAGGACGCCAT
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| CDS seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV |
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| Protein seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLEAAALMLKEKVHRIPVVNEQQQVIGIVTRTDVFKALEASKV |
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| Function | Uncharacterized protein MJ1232 [UniProtKB/Swiss-Prot:Q58629] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsS548G0416689400.01 | OsS548G0416689400.01.T02 | Chr04 | 2393365 | 2395883 | - | IGDBv1 | ||
| CDS seq | ATGGCGTCCTCGCCCTTCGCCGCCGCTGCCGCCGCCGTCCAGGGCGGCCTCGCGCTCCGGCCCGTCGCGCCGCCGCGGCTGTCTTCGAGCGACGTGGCGCGGAACGGCGGCGTGGCGGCGTGGCGTGCTCCGCGGCGGCGGATGGTGGCGGCGGGCGCGGCGGTGGGTGACCTGCGCCCGGCCATCGACGAGTACCCGGAGGGGATCCTCTCGGGCGAGTGGCCGGAGAACTTCTCCCTCCTCAGCTACGCCGACCTCCGCGCCTACCTCGAGTCGCAGATCGTCACCACCGACCAGATGAGCCCGACGGCGAAGCTCGGGGAGGTCATGTCGCGGCCCGTGCAGGTGGCCATGGCGGACCAGAGGCTGGCGGACATCGACGCCTTCTTCGGCGCACAGTCCGGCCTGCCGGTGCTCGACGAGGAGGGGAGGTGCATCGGCGTCGTCTCCAAGAAGGACAAGGCCAAGGCATCCAATGGGTTGGACTCAACTGTTGGAGAAGTCATGTCATCTCCTGCTATAACTCTGACACCCGAGAAGACTGTATTGGGTAACTTATGA
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| Protein seq | MASSPFAAAAAAVQGGLALRPVAPPRLSSSDVARNGGVAAWRAPRRRMVAAGAAVGDLRPAIDEYPEGILSGEWPENFSLLSYADLRAYLESQIVTTDQMSPTAKLGEVMSRPVQVAMADQRLADIDAFFGAQSGLPVLDEEGRCIGVVSKKDKAKASNGLDSTVGEVMSSPAITLTPEKTVLGNL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0136700 | RBH | 1.519365 | 2.129524 | 15.825553 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g05010 | RBH | 0.820955 | 1.423204 | 3.423542 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0136700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0001520 | RBH | 1.937720 | 2.016760 | 6.956452 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0001510 | RBH | 1.740646 | 1.589005 | 1.845762 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0001470 | RBH | 3.690643 | 11.151546 | 12.094501 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0001560 | RBH | 0.394285 | 0.119262 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0001550 | RBH | 24.844368 | 11.575408 | 21.125566 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0037800 | RBH | 11.12218 | 5.739369 | 56.809774 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0001770 | RBH | 0.595873 | 0.321438 | 1.188719 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0033000 | RBH | 13.3072165 | 3.3462035 | 12.2004135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0001520 | RBH | 1.745135 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0001780 | RBH | 1.119551 | 20.068306 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0001600 | RBH | 26.932516 | 22.648682 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0001440 | RBH | 1.956187 | 0.000000 | 3.384567 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0001600 | RBH | 1.214812 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G001620 | RBH | 0.639281 | 2.545333 | 2.838629 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0001600 | RBH | 0.895180 | 3.823072 | 15.988963 |
| Os XI: R9311 | R9311 | AGIS | R9311C04g14721 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_04g0019900 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_04g0021200 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_04g0021100 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_04g0022400 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0406070800.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0414048200.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_014617 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0411677200.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0413488000.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0406723400.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0406180000.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0409003000.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0406721800.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0406752200.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0406029200.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0406154400.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0413191200.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0406196000.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0406287000.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0406934200.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0406091000.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0406074000.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0406156400.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0407526200.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0407053400.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | NA | NA | NA | NA | NA |
| Os XI-2: TM | TM | SICAU | TMG0409355800.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0406024600.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0406044400.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0406207800.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0409201900.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0410810500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0407820500.01 | RBH | None | None | None |
