Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_MH63RS3_DEL0406100

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os cB: Basmati1 | Basmati1

Os XI-adm: Minghui 63 | MH63RS3

Chr04

2293892

2293946

SV Length:

Query Start:

Query End:

Allele sv Count:

55 bp

2398433

41

Gene_id	Chromosome	Start	End
OsMH63_04G0037800	Chr04	2397616	2401108

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_02428_DEL0405930	Chr04	2293892	2293946	2228123	2228123	55
Basmati1_117425_DEL0403670	Chr04	2293892	2293946	2284961	2284961	55
Basmati1_125619_DEL0406010	Chr04	2293892	2293946	2247228	2247228	55
Basmati1_125827_DEL0406070	Chr04	2293892	2293946	2180026	2180026	55
Basmati1_127518_DEL0405960	Chr04	2293892	2293946	2731509	2731509	55
Basmati1_127564_DEL0405840	Chr04	2293892	2293946	2300036	2300036	55
Basmati1_127652_DEL0405990	Chr04	2293892	2293946	2022872	2022872	55
Basmati1_127742_DEL0405170	Chr04	2293892	2293946	2160719	2160719	55
Basmati1_128077_DEL0405070	Chr04	2293892	2293946	1956184	1956184	55
Basmati1_132278_DEL0405490	Chr04	2293892	2293946	2075232	2075232	55
Basmati1_132424_DEL0406010	Chr04	2293892	2293946	2224958	2224958	55
Basmati1_Azucena_DEL0405270	Chr04	2293892	2293946	2078109	2078109	55
Basmati1_DG_DEL0405780	Chr04	2293892	2293946	2244337	2244337	55
Basmati1_DHX2_DEL0405810	Chr04	2293892	2293946	2245343	2245343	55
Basmati1_FH838_DEL0406260	Chr04	2293892	2293946	2301488	2301488	55
Basmati1_G8_DEL0405440	Chr04	2293892	2293946	2129932	2129932	55
Basmati1_HZ_DEL0405190	Chr04	2293892	2293946	2163985	2163985	55
Basmati1_II32_DEL0405710	Chr04	2293892	2293946	2080418	2080418	55
Basmati1_IR64_DEL0405940	Chr04	2293892	2293946	2298422	2298422	55
Basmati1_J4155_DEL0406060	Chr04	2293892	2293946	2210780	2210780	55
Basmati1_J4155S_DEL0406080	Chr04	2293892	2293946	2222833	2222833	55
Basmati1_Kosh_DEL0406060	Chr04	2293892	2293946	2568427	2568427	55
Basmati1_KY131_DEL0406250	Chr04	2293892	2293946	2577748	2577748	55
Basmati1_Lemont_DEL0405790	Chr04	2293892	2293946	2054748	2054748	55
Basmati1_LJ_DEL0405690	Chr04	2293892	2293946	2260541	2260541	55
Basmati1_NamRoo_DEL0405760	Chr04	2293892	2293946	2233973	2233973	55
Basmati1_Nipponbare_DEL0405830	Chr04	2293892	2293946	2427570	2427570	55
Basmati1_R498_DEL0405940	Chr04	2293892	2293946	2406215	2406215	55
Basmati1_R527_DEL0405940	Chr04	2293892	2293946	2394686	2394686	55
Basmati1_R9311_DEL0405330	Chr04	2293892	2293946	2205632	2205632	55
Basmati1_S548_DEL0406030	Chr04	2293892	2293946	2393505	2393505	55
Basmati1_TM_DEL0405490	Chr04	2293892	2293946	2155534	2155534	55
Basmati1_Tumba_DEL0405930	Chr04	2293892	2293946	2114096	2114096	55
Basmati1_WSSM_DEL0405140	Chr04	2293892	2293946	2115763	2115763	55
Basmati1_Y3551_DEL0406350	Chr04	2293892	2293946	2380727	2380727	55
Basmati1_Y58S_DEL0406100	Chr04	2293892	2293946	2744429	2744429	55
Basmati1_YX1_DEL0405770	Chr04	2293892	2293946	2276335	2276335	55
Basmati1_ZH11_DEL0405750	Chr04	2293892	2293946	2234998	2234998	55
Basmati1_ZS97RS3_DEL0405870	Chr04	2293892	2293946	2351501	2351501	55
Basmati1_OglaRS2_DEL0406130	Chr04	2293892	2293946	2014545	2014545	55
Basmati1_MH63RS3_DEL0406100	Chr04	2293892	2293946	2398433	2398433	55

>Basmati1_MH63RS3_DEL0406100
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