Factor of DNA methylation 1 [UniProtKB/Swiss-Prot: Q9S9P3]

GO:0003677 (DNA binding)
GO:0003725 (double-stranded RNA binding)
GO:0043621 (protein self-association)
GO:0003723 (RNA binding)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0010569 (regulation of double-strand break repair via homologous recombination)
GO:0009506 (plasmodesma)

DNA-directed RNA polymerase II subunit RPB2 [UniProtKB/Swiss-Prot: Q42877]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0032549 (ribonucleoside binding)
GO:0006351 (transcription, DNA-templated)
GO:0005665 (RNA polymerase II, core complex)

Probable histone H2A.1 [UniProtKB/Swiss-Prot: Q6ZL43]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Probable histone H2A.6 [UniProtKB/Swiss-Prot: Q75L11]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006325 (chromatin organization)
GO:0006342 (chromatin silencing)
GO:0000790 (nuclear chromatin)
GO:0000786 (nucleosome)

Ethylene-responsive transcription factor 1B [UniProtKB/Swiss-Prot: Q8LDC8]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0009867 (jasmonic acid mediated signaling pathway)
GO:0005634 (nucleus)

Asparagine--tRNA ligase, chloroplastic/mitochondrial [UniProtKB/Swiss-Prot: O48593]

GO:0004816 (asparagine-tRNA ligase activity)
GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006421 (asparaginyl-tRNA aminoacylation)
GO:0048481 (plant ovule development)
GO:0009507 (chloroplast)
GO:0009570 (chloroplast stroma)
GO:0005739 (mitochondrion)

RFS, rfs, cul7, OsRFS, OsCHR729, CHR729, CHR4, OsCHR4, CRL6, OsCRL, OsCHR4/CHR729, PKR1, OsPHD32, PHD32, OsCHD3

Protein CHROMATIN REMODELING 4 [UniProtKB/Swiss-Prot: F4KBP5]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0006325 (chromatin organization)
GO:0005634 (nucleus)
GO:0009506 (plasmodesma)

Transcription factor bHLH49 [UniProtKB/Swiss-Prot: Q9CAA9]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0040008 (regulation of growth)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 43 [UniProtKB/Swiss-Prot: Q5Z5Q3]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0003729 (mRNA binding)
GO:0003743 (translation initiation factor activity)
GO:0016281 (eukaryotic translation initiation factor 4F complex)

Y37, NAC11, ONAC011, ONAC11, OMTN4, OsY37, OsY37N, OsY37I, OsNAC1, DLN172, OsDLN172, NAC95, ONAC095, ONAC95

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Protein REVEILLE 2 [UniProtKB/Swiss-Prot: F4K5X6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0007623 (circadian rhythm)
GO:0009909 (regulation of flower development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009845 (seed germination)
GO:0005634 (nucleus)

Nuclear factor related to kappa-B-binding protein [UniProtKB/Swiss-Prot: Q6PIJ4]

GO:0003677 (DNA binding)
GO:0002020 (protease binding)
GO:0006310 (DNA recombination)
GO:0006281 (DNA repair)
GO:0031011 (Ino80 complex)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

DNA-directed RNA polymerase II subunit RPB1 [UniProtKB/Swiss-Prot: P18616]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046872 (metal ion binding)
GO:0006366 (transcription by RNA polymerase II)
GO:0009506 (plasmodesma)
GO:0005665 (RNA polymerase II, core complex)
GO:0005773 (vacuole)

Ethylene-responsive transcription factor ERF025 [UniProtKB/Swiss-Prot: Q9FJ90]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0050832 (defense response to fungus)
GO:0009873 (ethylene-activated signaling pathway)
GO:0019760 (glucosinolate metabolic process)
GO:0005634 (nucleus)

NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2, DLN113, OsDLN113, OsORE1, NAC83, ONAC083, ONAC83

NAC domain-containing protein 21/22 [UniProtKB/Swiss-Prot: Q84TE6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009734 (auxin-activated signaling pathway)
GO:0048527 (lateral root development)
GO:0010072 (primary shoot apical meristem specification)
GO:0005634 (nucleus)

Helicase-like transcription factor CHR28 [UniProtKB/Swiss-Prot: Q94BR5]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0004386 (helicase activity)
GO:0046872 (metal ion binding)
GO:0006325 (chromatin organization)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 31 [UniProtKB/Swiss-Prot: Q7XPK1]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0003729 (mRNA binding)
GO:0010468 (regulation of gene expression)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

Protein ROS1C [UniProtKB/Swiss-Prot: B8YIE8]

GO:0051539 (4 iron, 4 sulfur cluster binding)
GO:0051747 (cytosine C-5 DNA demethylase activity)
GO:0003677 (DNA binding)
GO:0016829 (lyase activity)
GO:0046872 (metal ion binding)
GO:0006284 (base-excision repair)
GO:0080111 (DNA demethylation)
GO:0005634 (nucleus)

Protein ROS1C [UniProtKB/Swiss-Prot: B8YIE8]

GO:0051539 (4 iron, 4 sulfur cluster binding)
GO:0051747 (cytosine C-5 DNA demethylase activity)
GO:0003677 (DNA binding)
GO:0016829 (lyase activity)
GO:0046872 (metal ion binding)
GO:0006284 (base-excision repair)
GO:0080111 (DNA demethylation)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor ERF061 [UniProtKB/Swiss-Prot: Q9C7W2]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

RNA polymerase sigma factor sigC [UniProtKB/Swiss-Prot: O24621]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0016987 (sigma factor activity)
GO:0071482 (cellular response to light stimulus)
GO:0006352 (DNA-templated transcription, initiation)
GO:2001141 (regulation of RNA biosynthetic process)
GO:0009507 (chloroplast)

Protein G1-like9 [UniProtKB/Swiss-Prot: Q5W659]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

Septin and tuftelin-interacting protein 1 homolog 1 [UniProtKB/Swiss-Prot: Q9SHG6]

GO:0003677 (DNA binding)
GO:1990446 (U1 snRNP binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0042752 (regulation of circadian rhythm)
GO:0000390 (spliceosomal complex disassembly)
GO:0031981 (nuclear lumen)
GO:0071008 (U2-type post-mRNA release spliceosomal complex)

Ethylene-responsive transcription factor 2 [UniProtKB/Swiss-Prot: Q40479]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0005634 (nucleus)

Factor of DNA methylation 1 [UniProtKB/Swiss-Prot: Q9S9P3]

GO:0003677 (DNA binding)
GO:0003725 (double-stranded RNA binding)
GO:0043621 (protein self-association)
GO:0003723 (RNA binding)
GO:0080188 (gene silencing by RNA-directed DNA methylation)
GO:0010569 (regulation of double-strand break repair via homologous recombination)
GO:0009506 (plasmodesma)

Protein BREAST CANCER SUSCEPTIBILITY 2 homolog B [UniProtKB/Swiss-Prot: Q7Y1C4]

GO:0003677 (DNA binding)
GO:0000724 (double-strand break repair via homologous recombination)
GO:0051321 (meiotic cell cycle)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005739 (mitochondrion)

Two-component response regulator ORR21 [UniProtKB/Swiss-Prot: A2XE31]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009736 (cytokinin-activated signaling pathway)
GO:0000160 (phosphorelay signal transduction system)
GO:0005634 (nucleus)

DNA (cytosine-5)-methyltransferase CMT1 [UniProtKB/Swiss-Prot: A0A0P0VUY4]

GO:0003682 (chromatin binding)
GO:0003886 (DNA (cytosine-5-)-methyltransferase activity)
GO:0003677 (DNA binding)
GO:0010424 (DNA methylation on cytosine within a CG sequence)
GO:0010216 (maintenance of DNA methylation)
GO:0005634 (nucleus)

Serine/arginine repetitive matrix protein 1 [UniProtKB/Swiss-Prot: Q52KI8]

GO:0003677 (DNA binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0000375 (RNA splicing, via transesterification reactions)
GO:0016363 (nuclear matrix)
GO:0016607 (nuclear speck)
GO:0005681 (spliceosomal complex)

AT-hook motif nuclear-localized protein 1 [UniProtKB/Swiss-Prot: Q8VYJ2]

GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
GO:0003677 (DNA binding)
GO:0043565 (sequence-specific DNA binding)
GO:0098687 (chromosomal region)
GO:0005737 (cytoplasm)
GO:0005739 (mitochondrion)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor ERF098 [UniProtKB/Swiss-Prot: Q9LTC5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

Protein G1-like3 [UniProtKB/Swiss-Prot: Q0DZF3]

GO:0003677 (DNA binding)
GO:0009299 (mRNA transcription)
GO:0007275 (multicellular organism development)
GO:0090698 (post-embryonic plant morphogenesis)
GO:0009416 (response to light stimulus)
GO:0005634 (nucleus)

Trihelix transcription factor DF1 [UniProtKB/Swiss-Prot: Q9C6K3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0019760 (glucosinolate metabolic process)
GO:0010192 (mucilage biosynthetic process)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcription factor IBH1-like 1 [UniProtKB/Swiss-Prot: Q9M0B9]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0009742 (brassinosteroid mediated signaling pathway)
GO:0009740 (gibberellic acid mediated signaling pathway)
GO:0040008 (regulation of growth)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 14 [UniProtKB/Swiss-Prot: Q7F8R0]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0003729 (mRNA binding)
GO:0010468 (regulation of gene expression)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

NAC domain-containing protein 76 [UniProtKB/Swiss-Prot: Q5Z6B6]

GO:0003677 (DNA binding)
GO:0009834 (plant-type secondary cell wall biogenesis)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0048829 (root cap development)
GO:0005634 (nucleus)

Genome polyprotein [UniProtKB/Swiss-Prot: Q6XKE6]

GO:0004190 (aspartic-type endopeptidase activity)
GO:0003677 (DNA binding)
GO:0003887 (DNA-directed DNA polymerase activity)
GO:0004519 (endonuclease activity)
GO:0003964 (RNA-directed DNA polymerase activity)
GO:0008270 (zinc ion binding)
GO:0046740 (transport of virus in host, cell to cell)

Protein ROS1A [UniProtKB/Swiss-Prot: C7IW64]

GO:0051539 (4 iron, 4 sulfur cluster binding)
GO:0003677 (DNA binding)
GO:0035514 (DNA demethylase activity)
GO:0016787 (hydrolase activity)
GO:0046872 (metal ion binding)
GO:0006284 (base-excision repair)
GO:0080111 (DNA demethylation)
GO:0048229 (gametophyte development)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor LEP [UniProtKB/Swiss-Prot: Q9M644]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0009740 (gibberellic acid mediated signaling pathway)
GO:0010030 (positive regulation of seed germination)
GO:0009739 (response to gibberellin)
GO:0005634 (nucleus)

NAC domain-containing protein 10 [UniProtKB/Swiss-Prot: Q8H4S4]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0048653 (anther development)
GO:0009555 (pollen development)
GO:0005634 (nucleus)

Fanconi anemia group I protein [UniProtKB/Swiss-Prot: Q9NVI1]

GO:0003677 (DNA binding)
GO:0070182 (DNA polymerase binding)
GO:0007049 (cell cycle)
GO:0036297 (interstrand cross-link repair)
GO:0031398 (positive regulation of protein ubiquitination)
GO:0005829 (cytosol)
GO:0016020 (membrane)
GO:0005654 (nucleoplasm)

Transcription factor bHLH106 [UniProtKB/Swiss-Prot: O80674]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0042538 (hyperosmotic salinity response)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0009941 (chloroplast envelope)
GO:0005634 (nucleus)

Zinc finger matrin-type protein 2 [UniProtKB/Swiss-Prot: Q9CPW7]

GO:0003677 (DNA binding)
GO:0008270 (zinc ion binding)
GO:0000398 (mRNA splicing, via spliceosome)
GO:0005634 (nucleus)
GO:0071005 (U2-type precatalytic spliceosome)
GO:0046540 (U4/U6 x U5 tri-snRNP complex)

Transcription factor MYBS1 [UniProtKB/Swiss-Prot: Q8LH59]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0042803 (protein homodimerization activity)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0009739 (response to gibberellin)
GO:0009751 (response to salicylic acid)
GO:0009744 (response to sucrose)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

Transcription initiation factor TFIID subunit 4b [UniProtKB/Swiss-Prot: F4K4L7]

GO:0003677 (DNA binding)
GO:0008134 (transcription factor binding)
GO:0006352 (DNA-templated transcription, initiation)
GO:0045944 (positive regulation of transcription by RNA polymerase II)
GO:0005669 (transcription factor TFIID complex)

Ethylene-responsive transcription factor ERF098 [UniProtKB/Swiss-Prot: Q9LTC5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)