Genome polyprotein [UniProtKB/Swiss-Prot: Q6XKE6]

GO:0004190 (aspartic-type endopeptidase activity)
GO:0003677 (DNA binding)
GO:0003887 (DNA-directed DNA polymerase activity)
GO:0004519 (endonuclease activity)
GO:0003964 (RNA-directed DNA polymerase activity)
GO:0008270 (zinc ion binding)
GO:0046740 (transport of virus in host, cell to cell)

Cyclic dof factor 2 [UniProtKB/Swiss-Prot: Q93ZL5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0009908 (flower development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15 [UniProtKB/Swiss-Prot: Q0JNI9]

GO:0003677 (DNA binding)
GO:0046983 (protein dimerization activity)
GO:0090229 (negative regulation of red or far-red light signaling pathway)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

RSR1, AP2/EREBP#090, AP2/EREBP90, OsTOE1, TOE1, qHD5, AP2-1, AP2/EREBP/RSR1, OsRSR1, DLN130, DLN130a, DLN130b, OsDLN130, OsDLN130a, OsDLN130b

APETALA2-like protein 1 [UniProtKB/Swiss-Prot: B8AXC3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0045892 (negative regulation of transcription, DNA-templated)
GO:2000014 (regulation of endosperm development)
GO:0009909 (regulation of flower development)
GO:0010581 (regulation of starch biosynthetic process)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

bZIP transcription factor 39 [UniProtKB/Swiss-Prot: Q6AU90]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006990 (positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response)
GO:0034976 (response to endoplasmic reticulum stress)
GO:0005789 (endoplasmic reticulum membrane)
GO:0016021 (integral component of membrane)
GO:0005634 (nucleus)

Histone H4 [UniProtKB/Swiss-Prot: P0CG89]

GO:0003677 (DNA binding)
GO:0046982 (protein heterodimerization activity)
GO:0006334 (nucleosome assembly)
GO:0042025 (host cell nucleus)
GO:0000786 (nucleosome)
GO:0005634 (nucleus)

ABSCISIC ACID-INSENSITIVE 5-like protein 2 [UniProtKB/Swiss-Prot: Q9LES3]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009738 (abscisic acid-activated signaling pathway)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0009737 (response to abscisic acid)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor 4 [UniProtKB/Swiss-Prot: Q40477]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0005634 (nucleus)

Transcription repressor OFP1 [UniProtKB/Swiss-Prot: Q9LZW2]

GO:0003677 (DNA binding)
GO:0006281 (DNA repair)
GO:0045892 (negative regulation of transcription, DNA-templated)
GO:0051510 (regulation of unidimensional cell growth)
GO:0005856 (cytoskeleton)
GO:0005730 (nucleolus)

ERF42, OsERF#042, OsERF042, OsERF42, AP2/EREBP#048, AP2/EREBP48, OsDREB2B, OsDREB2B2, OsDREB2A

Dehydration-responsive element-binding protein 2B [UniProtKB/Swiss-Prot: Q5W6R4]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0009408 (response to heat)
GO:0009651 (response to salt stress)
GO:0009414 (response to water deprivation)
GO:0005634 (nucleus)
GO:0005886 (plasma membrane)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

DNA-directed RNA polymerase III subunit RPC4 [UniProtKB/Swiss-Prot: Q5E9Z7]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0051607 (defense response to virus)
GO:0045087 (innate immune response)
GO:0045089 (positive regulation of innate immune response)
GO:0032728 (positive regulation of interferon-beta production)
GO:0006383 (transcription by RNA polymerase III)
GO:0005666 (RNA polymerase III complex)

bZIP transcription factor 18 [UniProtKB/Swiss-Prot: O22873]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0043621 (protein self-association)
GO:0005737 (cytoplasm)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)
GO:0048471 (perinuclear region of cytoplasm)

ERF96, DERF12, OsDERF12, OsERF#096, OsERF096, OsERF96, AP2/EREBP#116, AP2/EREBP116, OsAP2, OsAP2.1, OsAP2.2, OsERF36

Ethylene-responsive transcription factor 5 [UniProtKB/Swiss-Prot: Q40478]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006952 (defense response)
GO:0009873 (ethylene-activated signaling pathway)
GO:0005634 (nucleus)

Replication factor C subunit 3 [UniProtKB/Swiss-Prot: Q8VXX4]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0006281 (DNA repair)
GO:0006261 (DNA-dependent DNA replication)
GO:0005663 (DNA replication factor C complex)
GO:0005634 (nucleus)

NAC domain-containing protein 45 [UniProtKB/Swiss-Prot: Q2RB33]

GO:0003677 (DNA binding)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0009651 (response to salt stress)
GO:0009414 (response to water deprivation)
GO:0005634 (nucleus)

DNA-directed RNA polymerase V subunit 5A [UniProtKB/Swiss-Prot: Q9M1J2]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0006351 (transcription, DNA-templated)
GO:0042025 (host cell nucleus)
GO:0000419 (RNA polymerase V complex)

NAC transcription factor 29 [UniProtKB/Swiss-Prot: O49255]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009793 (embryo development ending in seed dormancy)
GO:0009908 (flower development)
GO:0009835 (fruit ripening)
GO:0010150 (leaf senescence)
GO:0009825 (multidimensional cell growth)
GO:0005634 (nucleus)

AT-hook motif nuclear-localized protein 1 [UniProtKB/Swiss-Prot: Q8VYJ2]

GO:0003680 (minor groove of adenine-thymine-rich DNA binding)
GO:0003677 (DNA binding)
GO:0043565 (sequence-specific DNA binding)
GO:0098687 (chromosomal region)
GO:0005737 (cytoplasm)
GO:0005739 (mitochondrion)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0005634 (nucleus)

DNA-directed RNA polymerase subunit alpha [UniProtKB/Swiss-Prot: P0C500]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0046983 (protein dimerization activity)
GO:0006351 (transcription, DNA-templated)
GO:0009507 (chloroplast)
GO:0005737 (cytoplasm)
GO:0009536 (plastid)

Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 [UniProtKB/Swiss-Prot: Q6P4K8]

GO:0003677 (DNA binding)
GO:0003755 (peptidyl-prolyl cis-trans isomerase activity)
GO:0006364 (rRNA processing)
GO:0005737 (cytoplasm)
GO:0005730 (nucleolus)
GO:0005819 (spindle)

Transcription factor NAI1 [UniProtKB/Swiss-Prot: Q8S3F1]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0007029 (endoplasmic reticulum organization)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcription initiation factor IIE subunit beta [UniProtKB/Swiss-Prot: P79011]

GO:0003677 (DNA binding)
GO:0016251 (RNA polymerase II general transcription initiation factor activity)
GO:0006367 (transcription initiation from RNA polymerase II promoter)
GO:0005730 (nucleolus)
GO:0005634 (nucleus)
GO:0005673 (transcription factor TFIIE complex)

Ethylene-responsive transcription factor ERF098 [UniProtKB/Swiss-Prot: Q9LTC5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

General transcription factor 3C polypeptide 3 [UniProtKB/Swiss-Prot: Q9Y5Q9]

GO:0003677 (DNA binding)
GO:0042791 (5S class rRNA transcription by RNA polymerase III)
GO:0006383 (transcription by RNA polymerase III)
GO:0042797 (tRNA transcription by RNA polymerase III)
GO:0031965 (nuclear membrane)
GO:0005730 (nucleolus)
GO:0005654 (nucleoplasm)
GO:0000127 (transcription factor TFIIIC complex)

DNA-directed RNA polymerase 3, chloroplastic [UniProtKB/Swiss-Prot: P69242]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0006351 (transcription, DNA-templated)
GO:0009507 (chloroplast)
GO:0009536 (plastid)

Methyl-CpG-binding domain-containing protein 2 [UniProtKB/Swiss-Prot: Q8LA53]

GO:0003677 (DNA binding)
GO:0019899 (enzyme binding)
GO:0008270 (zinc ion binding)
GO:0080111 (DNA demethylation)
GO:0042025 (host cell nucleus)
GO:0005634 (nucleus)

Ethylene-responsive transcription factor ERF091 [UniProtKB/Swiss-Prot: O49515]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0009873 (ethylene-activated signaling pathway)
GO:0010200 (response to chitin)
GO:0005634 (nucleus)

DNA (cytosine-5)-methyltransferase 1B [UniProtKB/Swiss-Prot: B1Q3J6]

GO:0003682 (chromatin binding)
GO:0003886 (DNA (cytosine-5-)-methyltransferase activity)
GO:0003677 (DNA binding)
GO:0010424 (DNA methylation on cytosine within a CG sequence)
GO:0009793 (embryo development ending in seed dormancy)
GO:0010216 (maintenance of DNA methylation)
GO:0006349 (regulation of gene expression by genetic imprinting)
GO:0005634 (nucleus)

NAC domain-containing protein 43 [UniProtKB/Swiss-Prot: Q84WP6]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0010047 (fruit dehiscence)
GO:0009834 (plant-type secondary cell wall biogenesis)
GO:0045893 (positive regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Transcription factor IND [UniProtKB/Swiss-Prot: O81313]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0010197 (polar nucleus fusion)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

Probable DNA helicase MCM9 [UniProtKB/Swiss-Prot: B8B406]

GO:0005524 (ATP binding)
GO:0003677 (DNA binding)
GO:0003678 (DNA helicase activity)
GO:0046872 (metal ion binding)
GO:0006281 (DNA repair)
GO:0006270 (DNA replication initiation)
GO:0051321 (meiotic cell cycle)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 44 [UniProtKB/Swiss-Prot: Q69XQ3]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0003729 (mRNA binding)
GO:0010468 (regulation of gene expression)
GO:0005737 (cytoplasm)
GO:0005634 (nucleus)

bZIP transcription factor 50 [UniProtKB/Swiss-Prot: Q69XV0]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0006990 (positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response)
GO:0034976 (response to endoplasmic reticulum stress)
GO:0005789 (endoplasmic reticulum membrane)
GO:0016021 (integral component of membrane)
GO:0005634 (nucleus)

Transcription factor RHD6 [UniProtKB/Swiss-Prot: Q9C707]

GO:0003677 (DNA binding)
GO:0001228 (DNA-binding transcription activator activity, RNA polymerase II-specific)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0048766 (root hair initiation)
GO:0005739 (mitochondrion)
GO:0005634 (nucleus)

KH domain-containing protein SPIN1 [UniProtKB/Swiss-Prot: Q75GR5]

GO:0003677 (DNA binding)
GO:0003729 (mRNA binding)
GO:0003723 (RNA binding)
GO:0009908 (flower development)
GO:0048579 (negative regulation of long-day photoperiodism, flowering)
GO:0048577 (negative regulation of short-day photoperiodism, flowering)
GO:0000381 (regulation of alternative mRNA splicing, via spliceosome)
GO:0005634 (nucleus)

GHD7, Ghd2, Ghd7, OsGhd7, OsCCT26, OsCMF8, OsI, Ghd7/Hd4, Hd4, EH7-1/Hd4, Ghd7-0a, EH7-1, EH7/Ghd7, EH7, OsEH7

Transcription factor GHD7 [UniProtKB/Swiss-Prot: E5RQA1]

GO:0003677 (DNA binding)
GO:0009908 (flower development)
GO:0048579 (negative regulation of long-day photoperiodism, flowering)
GO:0009909 (regulation of flower development)
GO:0005634 (nucleus)

Zinc finger CCCH domain-containing protein 49 [UniProtKB/Swiss-Prot: Q6Z358]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0036002 (pre-mRNA binding)
GO:0017070 (U6 snRNA binding)
GO:0000974 (Prp19 complex)
GO:0071006 (U2-type catalytic step 1 spliceosome)
GO:0071007 (U2-type catalytic step 2 spliceosome)

DNA polymerase lambda [UniProtKB/Swiss-Prot: Q67VC8]

GO:0051575 (5'-deoxyribose-5-phosphate lyase activity)
GO:0003677 (DNA binding)
GO:0003887 (DNA-directed DNA polymerase activity)
GO:0030145 (manganese ion binding)
GO:0097510 (base-excision repair, AP site formation via deaminated base removal)
GO:0006260 (DNA replication)
GO:0006303 (double-strand break repair via nonhomologous end joining)
GO:0005634 (nucleus)

NAC domain-containing protein 86 [UniProtKB/Swiss-Prot: Q9FFI5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0090603 (sieve element differentiation)
GO:0090602 (sieve element enucleation)
GO:0005634 (nucleus)

Transcription factor bHLH57 [UniProtKB/Swiss-Prot: Q9M128]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046983 (protein dimerization activity)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005829 (cytosol)
GO:0005634 (nucleus)

DNA topoisomerase 3-alpha [UniProtKB/Swiss-Prot: C7J0A2]

GO:0003677 (DNA binding)
GO:0003916 (DNA topoisomerase activity)
GO:0003917 (DNA topoisomerase type I (single strand cut, ATP-independent) activity)
GO:0008270 (zinc ion binding)
GO:0006265 (DNA topological change)
GO:0005694 (chromosome)
GO:0005634 (nucleus)

DNA topoisomerase 3-alpha [UniProtKB/Swiss-Prot: C7J0A2]

GO:0003677 (DNA binding)
GO:0003916 (DNA topoisomerase activity)
GO:0003917 (DNA topoisomerase type I (single strand cut, ATP-independent) activity)
GO:0008270 (zinc ion binding)
GO:0006265 (DNA topological change)
GO:0005694 (chromosome)
GO:0005634 (nucleus)

Cyclic dof factor 2 [UniProtKB/Swiss-Prot: Q93ZL5]

GO:0003677 (DNA binding)
GO:0003700 (DNA-binding transcription factor activity)
GO:0046872 (metal ion binding)
GO:0009908 (flower development)
GO:0006355 (regulation of transcription, DNA-templated)
GO:0005634 (nucleus)

SprT-like domain-containing protein Spartan [UniProtKB/Swiss-Prot: Q22557]

GO:0003677 (DNA binding)
GO:0046872 (metal ion binding)
GO:0031593 (polyubiquitin modification-dependent protein binding)
GO:0006974 (cellular response to DNA damage stimulus)
GO:0006281 (DNA repair)
GO:0005694 (chromosome)
GO:0005634 (nucleus)

DNA-3-methyladenine glycosylase [UniProtKB/Swiss-Prot: Q39147]

GO:0003905 (alkylbase DNA N-glycosylase activity)
GO:0003677 (DNA binding)
GO:0008725 (DNA-3-methyladenine glycosylase activity)
GO:0052822 (DNA-3-methylguanine glycosylase activity)
GO:0052821 (DNA-7-methyladenine glycosylase activity)
GO:0043916 (DNA-7-methylguanine glycosylase activity)
GO:0006284 (base-excision repair)
GO:0005634 (nucleus)

DNA-directed RNA polymerases II, IV and V subunit 6A [UniProtKB/Swiss-Prot: Q9FJ98]

GO:0003677 (DNA binding)
GO:0003899 (DNA-directed 5'-3' RNA polymerase activity)
GO:0006351 (transcription, DNA-templated)
GO:0005736 (RNA polymerase I complex)
GO:0005665 (RNA polymerase II, core complex)
GO:0005666 (RNA polymerase III complex)
GO:0000418 (RNA polymerase IV complex)
GO:0000419 (RNA polymerase V complex)