Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0340500 | OGI:12060710 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:22868228-22870191 | ||||||||
| Gene Symbol | RPL2, rpl2, rpl8, RPL8, OsRPL2, OsRPL8 | ||||||||||
| DNA seq | AACCCTAGCCACCCCCGCCTCCCCCATTCTCCCCGCCGCCGCCGCCGCCGCCGCCGACTCGCCGCCGACGAGGAGATGGGTCGCGTGATCCGCGCGCAGCGTAAGGGTGCGGGCTCCGTGTTCAAGTCCCACACCCACCACCGCAAGGGCCCCGCGAGGTTCCGCTCCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGCCGCGGCGCGCCGCTCGCCAAGGTGACGTTCCGCCACCCGTTCCGGTACAAGCACCAGAAGGAGCTGTTCGTCGCGGCGGAGGGGATGTACACGGGGCAGTTCGTCTACTGCGGCCGCCGCGCCACGCTCTCCATCGGCAACGTGCTCCCGATCCGGTCGGTACCCGAGGGCGCCGTGGTCTGCAACGTCGAGCACCACGTCGGCGACCGCGGCGTCTTCGCCAGGGCGTCCGGCGACTACGCCATCGTCATCAGCCACAACCCCGACAACGGCACATCCAGGTGATCCCCATCTCTCTCGCTTCTTTTTTTTGCCTGAATTGATGAGATGTTTTGTGTTAGATCTGTTTGTTAGTCTCGTAGTTGTGTGGTAGTAACTACTATTATTGGATCTGAATTGATTTGTTCGCGTGATTAGAAGAACTCATCTATTGGAAATGATCTCGGCTCAATCTAAATATGGATGATGCGATTTAATGTTGCTTTAATTATTTGTTATTTAGTAGAGACCCAAAGTAAATATATGTGCCATTTGTTTAGAGATGATTCGAATGCCTTGGATGTAGCTACTTTAGTGTATTCTCGAACATTTGCTTCTGTTGATACTGTGTAATAGAGCACCACAAACAACTAGTTTTGTTCAATAATCCTGCTGTTTTTTCTATCGTTATAATATAGTTGTATATGTACTACTTGATATTGTTGCCCATGGATGCTTTCCATTTGTTCTACCATCAAGATTGTGGTGGCATATGTACTAGATATTGTTTGTCTATGCATGATTAATATGATTGGCCAATTCGCTCTTTCAAGTGGTGAATTATGTTTATGCTTATGATTTTGCTATCAAGTGATGTATGTATGCTAACATAGAAGATAATCCTTTACATATGCGCCTTGTTTGATCCGCATGCTTGCTTCTGTTGGAGAGATGTCCTTGGCCTTGTGAAGTATTTTTATTCCTGCAATTTTTTTGTAATGTTCAGTGCAAATAAACTGTATTGCTCATGCAACTAGTTGATATTATTTTCTTGCAGGATCAAGCTCCCCTCTGGTGCCAAGAAGATTGTCCCCAGCAGCTGCCGTGCCATGATCGGTCAGGTTGCTGGTGGTGGCAGGACTGAGAAGCCGATGCTCAAGGCTGGAAACGCCTACCACAAGTACCGCGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCTCCACCGTCCGCCGTGATGCACCTCCTGGCCAGAAGGTTGGTCTCATCGCTGCAAGGAGGACTGGTCGTCTCAGAGGCCAGGCCGCCGCTACCGCTGCCAAGGCCGACAAGGCCACTTAGAGTGTTACTTATTGTTGCTACTATCCATATTCGCTACCATGCTTATCATCGCTAGATTAAAGGACATGTATTCCAGTATGGTCGTGCTTTTTGCTTGGTACTCTGGTCACATTTGTGATAAATGTTCTCAGTTTTCGTGGTCATGGTCTGGATTCTACATTCCACCTAAAGAAGTTTTTACCTGGTTATTTAATCCTTGAGTTGTTGAATTAGCTCATGGTAATTGTCAGTAGTCTTCCACTTGGTTCTCTCTGTGGATGATCGTTCTTGTTCTCTGTTTGCGCTGTGGCTGATTGTTCTCATGTTTTTAAGGTTTTTGGGTTAGTCACTGGTCGCTTCGTCACTGTG
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| CDS seq | ATGGGTCGCGTGATCCGCGCGCAGCGTAAGGGTGCGGGCTCCGTGTTCAAGTCCCACACCCACCACCGCAAGGGCCCCGCGAGGTTCCGCTCCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGCCGCGGCGCGCCGCTCGCCAAGGTGACGTTCCGCCACCCGTTCCGGTACAAGCACCAGAAGGAGCTGTTCGTCGCGGCGGAGGGGATGTACACGGGGCAGTTCGTCTACTGCGGCCGCCGCGCCACGCTCTCCATCGGCAACGTGCTCCCGATCCGGTCGGTACCCGAGGGCGCCGTGGTCTGCAACGTCGAGCACCACGTCGGCGACCGCGGCGTCTTCGCCAGGGCGTCCGGCGACTACGCCATCGTCATCAGCCACAACCCCGACAACGGCACATCCAGGATCAAGCTCCCCTCTGGTGCCAAGAAGATTGTCCCCAGCAGCTGCCGTGCCATGATCGGTCAGGTTGCTGGTGGTGGCAGGACTGAGAAGCCGATGCTCAAGGCTGGAAACGCCTACCACAAGTACCGCGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCTCCACCGTCCGCCGTGATGCACCTCCTGGCCAGAAGGTTGGTCTCATCGCTGCAAGGAGGACTGGTCGTCTCAGAGGCCAGGCCGCCGCTACCGCTGCCAAGGCCGACAAGGCCACTTAG
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| Protein seq | MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKAT |
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| Function | 60S ribosomal protein L8 [UniProtKB/Swiss-Prot:P29766] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0340500 | OsZS97_12T0340500.1 | Chr12 | 22868228 | 22870191 | + | makerRMon | ||
| CDS seq | ATGGGTCGCGTGATCCGCGCGCAGCGTAAGGGTGCGGGCTCCGTGTTCAAGTCCCACACCCACCACCGCAAGGGCCCCGCGAGGTTCCGCTCCCTCGACTTCGGCGAGCGCAACGGCTACCTCAAGGGCGTCGTCACCGACATCATCCACGACCCCGGCCGCGGCGCGCCGCTCGCCAAGGTGACGTTCCGCCACCCGTTCCGGTACAAGCACCAGAAGGAGCTGTTCGTCGCGGCGGAGGGGATGTACACGGGGCAGTTCGTCTACTGCGGCCGCCGCGCCACGCTCTCCATCGGCAACGTGCTCCCGATCCGGTCGGTACCCGAGGGCGCCGTGGTCTGCAACGTCGAGCACCACGTCGGCGACCGCGGCGTCTTCGCCAGGGCGTCCGGCGACTACGCCATCGTCATCAGCCACAACCCCGACAACGGCACATCCAGGATCAAGCTCCCCTCTGGTGCCAAGAAGATTGTCCCCAGCAGCTGCCGTGCCATGATCGGTCAGGTTGCTGGTGGTGGCAGGACTGAGAAGCCGATGCTCAAGGCTGGAAACGCCTACCACAAGTACCGCGTGAAGAGGAACTGCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCCGTTGAGCATCCCCACGGAGGAGGTAACCACCAGCACATTGGTCACGCCTCCACCGTCCGCCGTGATGCACCTCCTGGCCAGAAGGTTGGTCTCATCGCTGCAAGGAGGACTGGTCGTCTCAGAGGCCAGGCCGCCGCTACCGCTGCCAAGGCCGACAAGGCCACTTAG
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| Protein seq | MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 149.280472 | 392.163315 | 373.5719755 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0567700 | RBH | 34.086613 | 32.902996 | 82.699295 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g38000 | RBH | 21.874197 | 21.072252 | 20.176893 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0567700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017710 | RBH | 8.550179 | 84.546532 | 63.673496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017830 | RBH | 1.642415 | 72.585045 | 35.603027 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0018190 | RBH | 17.725258 | 163.900650 | 73.702675 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017520 | RBH | 1.596125 | 14.222725 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0017090 | RBH | 54.436928 | 490.795776 | 166.290146 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0309100 | RBH | 138.420006 | 289.377777 | 249.778969 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016990 | RBH | 2.871840 | 18.005449 | 14.613942 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017220 | RBH | 2.844851 | 4.899008 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017490 | RBH | 4.740944 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017420 | RBH | 41.384872 | 438.039490 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017450 | RBH | 5.360123 | 0.0 | 12.805112 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017610 | RBH | 1.463633 | 153.485092 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017350 | RBH | 4.223735 | 165.365799 | 31.565794 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0017020 | RBH | 15.372343 | 243.747192 | 86.880737 |
