Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsZS97_12G0215600 | OGI:12037870 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:13587823-13590490 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGGAGGTTTTTCTCTTTGCTCTTTGTTCCCACCTCCCTCCTTTTCACCTCTTCCTCCCATCTTTTGATTTTTTTTTTTTTGCTTTTCTTCCCTTTCCACCACCCCCTTCCTCCGAAGAACAACATGTGTTGAGGAAAGAACAGGAAGAACTTACGGGAAATTTACTTGATGGAGGATTCTTTTGTTCTGTGTTCCCCCTCTCTAGTTTAACCTCTTCTTCCTTTCTGTCTTTTTTTTTTTTGCTTTTCTTCCCTTTCCACTATCCTGAGTTTTCTGCTGCTTCCCTGCACAAAACTTTATTATATAAAAACTCATAAGCAACACAACATTAATCTGGTCTATTTTTTTCATGTGGTTGTAATGCAAAATTACTGCAAAAAAAAACTGCCCTCAACTATAGCAAATCTTGTGCAGAGTGTTTGCTTTTCCTTATGCCCAACTGGGTGACTAAATTTCTAAATAGTGCACAACTCAGAAATATCTTGATTTGCTAACTGTTAAAATTGCACATTTGTTCTCTTGTAGTCATGCTTTGAATTATGGGAGCTCTCAGTTCATGCAAATGCCATTACATTGTACAGAAAAAAGGATGTAATGCCATTTTTTTCATCTATCCAAATGTGCAGGGCACAGAGGCAGAATCAAATGAAGACTATAGGATGTTATTCAGATTATCACAGGAGGGAGGCATCACCTATACAAATTTAATCCAGCAAGTCTCTGTCTCACCTAATGCAATTCTTCCTAGTGCTGAGGTGGCAGTGAGTAGAAAAAATAAAACACATATTAAATGAAATATTTAACTAAAACTTTATGTGCACAGTCATAACTCCCACACTGTCTTTTTTTTTTTTTTTGCAAAACAGGGTGGTCTTCCTCTGCTCCAAAACACTTATGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGGTGTGTTCCTTTTTGTTTATTTGATTTGTGTTGTGCCATCCCATTATTTGATTAAAAAACATATTCATGATTGGTGTGGATATATCTAATCTGGTTAAAAAGTTCAAATCAAAATAGAACTATAAAAAAGATCTCTTTATTAGAATTTTTTTTCTTACCACTACAGAGTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTTGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATGTGCAACTCTTTGCCACAAAGTGTAGCTGTACATCCTCCTATGGCATCACTGGACATGCTATATGATGAAATGCATAAATCAAGCGCTGATGTTGATAATCAAGCTGAGATGTGCAGGCCAACAGTACAATTGAAAGCATCATCTGTAGAAGTGATTTATAATGAAATGCAGACTCAAATTATTGAGGCTGATGCCTGTTTTGACCAGCACTTTGAGCAAGCAACAGAAGAGGATTTATTGTCTGATCATGCAATAGTTACATTTCAGCAAGATAGAACAAGATAAAAGTGCAGAAAATCCAGATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAGCAGTTGTTCAGAGAGGTGGTCAGGATGCTAAAAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAAAATGAAGCTTTTGACTTCTACAATGGTTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTACCATAGCAGAAAAACCGATGTTGTGACAAGGCACACGTTCAAATGCAACAGGTGACGGAAACCAAGTGATCCAAAGGAGAAGGACCTGCCTGAGTTTGATGAAGTTGAGAATTGTTTGCAAACAAACACAACAAATCCATTGGTAAAAAAGAGAAAACAGAATAAAGTGGTTTACACAAATTGCAAAGCTAAGATGGTGATAACATTGAAGAGGGGCTTTTGGTACATTACAAGGCTCAATCTAGAGCACAATCATCCACTATCTCCACCAGAAGAAAGAAATTCCTAAGGTCCCACAAACATATGACAGACCAGGAGAAACTTTTGATAAGAACTCTAAACAAAATCAATGTGCCCACAAGGATGATTATGTCTGTTTTGTCATATGTTAGGGGTGGCTTGTCTGCAGTTCCTTACACAAAAAAGGCTGTGAGCAATTATAGAGATTTTGTTAGAAGAGAAAGTGGGAAAAATGACATGATGCAGTGTTTGGATTTTTTTGAGAAGAAAAGATCAGAGGATCCATTGTTTTATTTCAGATTCAGAACTGATGAGAACAATGTTGTGAAGAGTCTGTTTTGGTCCGATGGGAACAGCAGAAAATTTTATGAGATGTTTGGTGACATAGTTAGTTTTGACACGACGTACAAGACAAACAGGTATGATTTGCCCTTTGCTCCATTTGTAGGGATAACTAGTCATGGTGACAATTGCCTATTTGGTTATGCATTCCTACAAGATGAAACAAGTGAGACTTTTCAGTGGTTATTCAATACGTTCCTTGATTGTATGGGTGGCAAGGTTCCTGCTACTATTATAACTGATCAAGACTTGGCAATGAAGACTGCTATTGCCATAGTTTTTCCAGACGCTGTTCATAGGGATTGCCTGTTCCATATGTTATCAAATGCAAGGGACAAAACAGGAAGGACATTCAATTAA
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CDS seq | ATGGAGGGCACAGAGGCAGAATCAAATGAAGACTATAGGATGTTATTCAGATTATCACAGGAGGGAGGCATCACCTATACAAATTTAATCCAGCAAGTCTCTGTCTCACCTAATGCAATTCTTCCTAGTGCTGAGGTGGCAGGTGGTCTTCCTCTGCTCCAAAACACTTATGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGAGTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTTGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATGTGCAACTCTTTGCCACAAAGTGTAGCTGTACATCCTCCTATGGCATCACTGGACATGCTATATGATGAAATGCATAAATCAAGCGCTGATGTTGATAATCAAGCTGAGATGTGCAGGCCAACAGTACAATTGAAAGCATCATCTGTAGAATTACATTTCAGCAAGATAGAACAAGATAAAAGTGCAGAAAATCCAGATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAGCAGTTGTTCAGAGAGGTGGTCAGGATGCTAAAAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAAAATGAAGCTTTTGACTTCTACAATGGTTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTACCATAGCAGAAAAACCGATGTTGTGACAAGGCACACGTTCAAATGCAACAGGGGTGGCTTGTCTGCAGTTCCTTACACAAAAAAGGCTGTGAGCAATTATAGAGATTTTGTTAGAAGAGAAAGTGGGAAAAATGACATGATGCAGTGTTTGGATTTTTTTGAGAAGAAAAGATCAGAGGATCCATTGTTTTATTTCAGATTCAGAACTGATGAGAACAATGTTGTGAAGAGTCTGTTTTGGTCCGATGGGAACAGCAGAAAATTTTATGAGATGTTTGGTGACATAGTTAGTTTTGACACGACGTACAAGACAAACAGGTATGATTTGCCCTTTGCTCCATTTGTAGGGATAACTAGTCATGGTGACAATTGCCTATTTGGTTATGCATTCCTACAAGATGAAACAAGTGAGACTTTTCAGTGGTTATTCAATACGTTCCTTGATTGTATGGGTGGCAAGGTTCCTGCTACTATTATAACTGATCAAGACTTGGCAATGAAGACTGCTATTGCCATAGTTTTTCCAGACGCTGTTCATAGGGATTGCCTGTTCCATATGTTATCAAATGCAAGGGACAAAACAGGAAGGACATTCAATTAA
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Protein seq | MEGTEAESNEDYRMLFRLSQEGGITYTNLIQQVSVSPNAILPSAEVAGGLPLLQNTYGSFMQLLQAPIESESALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPMASLDMLYDEMHKSSADVDNQAEMCRPTVQLKASSVELHFSKIEQDKSAENPDQNFSEEDINIFLENESVAVVQRGGQDAKSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRGGLSAVPYTKKAVSNYRDFVRRESGKNDMMQCLDFFEKKRSEDPLFYFRFRTDENNVVKSLFWSDGNSRKFYEMFGDIVSFDTTYKTNRYDLPFAPFVGITSHGDNCLFGYAFLQDETSETFQWLFNTFLDCMGGKVPATIITDQDLAMKTAIAIVFPDAVHRDCLFHMLSNARDKTGRTFN |
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Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsZS97_12G0215600 | OsZS97_12T0215600.1 | Chr12 | 13587823 | 13590490 | + | makerRMon | ||
CDS seq | ATGGAGGGCACAGAGGCAGAATCAAATGAAGACTATAGGATGTTATTCAGATTATCACAGGAGGGAGGCATCACCTATACAAATTTAATCCAGCAAGTCTCTGTCTCACCTAATGCAATTCTTCCTAGTGCTGAGGTGGCAGGTGGTCTTCCTCTGCTCCAAAACACTTATGGCAGTTTCATGCAGCTATTGCAAGCTCCTATTGAATCAGAGAGTGCTCTATATTTGACATCCAATAGATTTGAGTATGACAACACCTTTTGGGGTTTTGATCCTCACAATGGTTATCAACAAAATGACCTGCAAAATGCACAAACAGACACCTCTCAGATGTGCAACTCTTTGCCACAAAGTGTAGCTGTACATCCTCCTATGGCATCACTGGACATGCTATATGATGAAATGCATAAATCAAGCGCTGATGTTGATAATCAAGCTGAGATGTGCAGGCCAACAGTACAATTGAAAGCATCATCTGTAGAATTACATTTCAGCAAGATAGAACAAGATAAAAGTGCAGAAAATCCAGATCAAAATTTTAGTGAGGAAGATATAAACATATTTCTGGAGAATGAAAGTGTAGCAGTTGTTCAGAGAGGTGGTCAGGATGCTAAAAGTGCACATGTGCCGTCAATCAACAAAGTTTTTGCTGATGAAAATGAAGCTTTTGACTTCTACAATGGTTATGCTTATATGGTTGGTTTCTCTACATGCAAAGCTAGCAATTACCATAGCAGAAAAACCGATGTTGTGACAAGGCACACGTTCAAATGCAACAGGGGTGGCTTGTCTGCAGTTCCTTACACAAAAAAGGCTGTGAGCAATTATAGAGATTTTGTTAGAAGAGAAAGTGGGAAAAATGACATGATGCAGTGTTTGGATTTTTTTGAGAAGAAAAGATCAGAGGATCCATTGTTTTATTTCAGATTCAGAACTGATGAGAACAATGTTGTGAAGAGTCTGTTTTGGTCCGATGGGAACAGCAGAAAATTTTATGAGATGTTTGGTGACATAGTTAGTTTTGACACGACGTACAAGACAAACAGGTATGATTTGCCCTTTGCTCCATTTGTAGGGATAACTAGTCATGGTGACAATTGCCTATTTGGTTATGCATTCCTACAAGATGAAACAAGTGAGACTTTTCAGTGGTTATTCAATACGTTCCTTGATTGTATGGGTGGCAAGGTTCCTGCTACTATTATAACTGATCAAGACTTGGCAATGAAGACTGCTATTGCCATAGTTTTTCCAGACGCTGTTCATAGGGATTGCCTGTTCCATATGTTATCAAATGCAAGGGACAAAACAGGAAGGACATTCAATTAA
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Protein seq | MEGTEAESNEDYRMLFRLSQEGGITYTNLIQQVSVSPNAILPSAEVAGGLPLLQNTYGSFMQLLQAPIESESALYLTSNRFEYDNTFWGFDPHNGYQQNDLQNAQTDTSQMCNSLPQSVAVHPPMASLDMLYDEMHKSSADVDNQAEMCRPTVQLKASSVELHFSKIEQDKSAENPDQNFSEEDINIFLENESVAVVQRGGQDAKSAHVPSINKVFADENEAFDFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRGGLSAVPYTKKAVSNYRDFVRRESGKNDMMQCLDFFEKKRSEDPLFYFRFRTDENNVVKSLFWSDGNSRKFYEMFGDIVSFDTTYKTNRYDLPFAPFVGITSHGDNCLFGYAFLQDETSETFQWLFNTFLDCMGGKVPATIITDQDLAMKTAIAIVFPDAVHRDCLFHMLSNARDKTGRTFN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0 | 0 | 0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g24400 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0011340 | SBH | 0.0 | 0.0 | 0.0 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0011520 | SBH | 0.0 | 0.0 | 0.0 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0011500 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0011310 | SBH | 0.0 | 0.0 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0011050 | SBH | 0.0 | 0.0 | 0.0 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0192000 | SBH | 0 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0011260 | SBH | 0.0 | 0.0 | 0.0 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0077800 | SBH | 0 | 0 | 0.018537 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0011090 | SBH | 0.0 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0011440 | SBH | 0.0 | 0.0 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0011340 | SBH | 0.0 | 0.0 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0011270 | SBH | 0.0 | 0.0 | 0.0 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0011460 | SBH | 0.0 | 0.0 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G011230 | SBH | 0.0 | 0.0 | 0.0 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0010980 | SBH | 0.0 | 0.0 | 0.0 |