Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0140500 | OGI:08019660 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:8461530-8462715 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGATTGTTCTGGATAAATTGTTAAACAAAATTCGTCGTTCTGTTCGTATCATAGGAGGTAATACAGTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGGACGGATGTTTGGCATTGATGTCGAATATAGGTGGAATACAACATACCTGTTGCTGCGACAGTTAAAAGGGTACGAGGAGTTAATTTATGTTTTCATCAATTCAATGCATGTCAGAATGAAGGATACCGATGACGACGACGATGGTGAGATTTTGATTCTCACCGATCAGGACTAGGAGATCGCTACACGTGTGCATAAATTTCTGATGCCCTTTTATAATGCTACAGTTCAATTATCGGGAATTTACTATCCTACATCTTGTTTGGTGCTTGAGTGGATTTGGAAGCTGGCACTTGTTTTTGATGAAAACCGTCTGATCATATTCAGTCTTCCATTGTTAAACCCATGGAAGAAAAATTTCTCAAATACTTCACCGCTATACCTCACCTTTATTGCTTTGCTTTGATACTTGATCCTCGCAAAAAGTTGGAAACCGCTAAAGTTGCCATGAACTCAATAGGTGATGCAGTGGGGTTGATTATTCTGAAGCTTTTCAACATGTCAATGATAAGCTCTATAGGGTTTTCTGTCTATACCAAACCAAGCTTGGTGGTACTCCCCGAGTTCCCAAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGAAGCAGTATATAGGCAACGACCAAGCCTCTTCATCCTCAGAGAACAAATCAACATGGAACCCAAATTTAGAGCTTAACCACTACCTCGTCACCAATCATACTGAGCATGATACGACGCTTGATGGCGACGATGTCGAACTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTACCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTCTCTTCCGAGCAAGCATTCAGCGTTACTAGAAGAATTATTGAAGAACGAAGGTCATGCCTGACACCCAAGACGGTTGAGTCAATATTTTGTCTTAAAGACTGGATGGAAGCAGATGAACGAATGCAACACTGTCTACATGATCAAGAGCTTGCCGATGCAATGGAAGACGCATTGGCAGAAATTTGCCTTACCAAAGATGATGGTGGTGTTGATTCGGAGTAA
More
|
||||||||||
| CDS seq | ATGATTGTTCTGGATAAATTGTTAAACAAAATTCGTCGTTCTGTTCGTATCATAGGAGGTAATACAGTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGGACGGATGTTTGGCATTGATGTCGAATATAGGTGGAATACAACATACCTGTTGCTGCGACAGTTAAAAGGGTACGAGGAGTTAATTTATGTTTTCATCAATTCAATGCATGTCAGAATGAAGGATACCGATGACGACGACGATGCTTTTCAACATGTCAATGATAAGCTCTATAGGGTTTTCTGTCTATACCAAACCAAGCTTGGTGGTACTCCCCGAGTTCCCAAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGAAGCAGTATATAGGCAACGACCAAGCCTCTTCATCCTCAGAGAACAAATCAACATGGAACCCAAATTTAGAGCTTAACCACTACCTCGTCACCAATCATACTGAGCATGATACGACGCTTGATGGCGACGATGTCGAACTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTACCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTCTCTTCCGAGCAAGCATTCAGCGTTACTAGAAGAATTATTGAAGAACGAAGGTCATGCCTGACACCCAAGACGGTTGAGTCAATATTTTGTCTTAAAGACTGGATGGAAGCAGATGAACGAATGCAACACTGTCTACATGATCAAGAGCTTGCCGATGCAATGGAAGACGCATTGGCAGAAATTTGCCTTACCAAAGATGATGGTGGTGTTGATTCGGAGTAA
More
|
||||||||||
| Protein seq | MIVLDKLLNKIRRSVRIIGGNTVVKARFQDYCKAKKKPGRMFGIDVEYRWNTTYLLLRQLKGYEELIYVFINSMHVRMKDTDDDDDAFQHVNDKLYRVFCLYQTKLGGTPRVPKQTSQKKASKSSAVNLWKQYIGNDQASSSSENKSTWNPNLELNHYLVTNHTEHDTTLDGDDVELLGWWKEKERTLPMLPHFARDILLVPASSVSSEQAFSVTRRIIEERRSCLTPKTVESIFCLKDWMEADERMQHCLHDQELADAMEDALAEICLTKDDGGVDSE |
||||||||||
| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0140500 | OsZS97_12T0140500.1 | Chr12 | 8461530 | 8462715 | + | makerRMon | ||
| CDS seq | ATGATTGTTCTGGATAAATTGTTAAACAAAATTCGTCGTTCTGTTCGTATCATAGGAGGTAATACAGTGGTCAAAGCGAGGTTCCAGGACTACTGTAAAGCGAAGAAGAAACCTGGACGGATGTTTGGCATTGATGTCGAATATAGGTGGAATACAACATACCTGTTGCTGCGACAGTTAAAAGGGTACGAGGAGTTAATTTATGTTTTCATCAATTCAATGCATGTCAGAATGAAGGATACCGATGACGACGACGATGCTTTTCAACATGTCAATGATAAGCTCTATAGGGTTTTCTGTCTATACCAAACCAAGCTTGGTGGTACTCCCCGAGTTCCCAAGCAGACCTCACAAAAGAAAGCAAGCAAGTCAAGTGCAGTAAATTTGTGGAAGCAGTATATAGGCAACGACCAAGCCTCTTCATCCTCAGAGAACAAATCAACATGGAACCCAAATTTAGAGCTTAACCACTACCTCGTCACCAATCATACTGAGCATGATACGACGCTTGATGGCGACGATGTCGAACTCCTTGGGTGGTGGAAAGAGAAAGAGCGAACTCTTCCTATGTTACCTCACTTTGCTCGAGATATTCTTCTGGTTCCGGCCTCCTCCGTCTCTTCCGAGCAAGCATTCAGCGTTACTAGAAGAATTATTGAAGAACGAAGGTCATGCCTGACACCCAAGACGGTTGAGTCAATATTTTGTCTTAAAGACTGGATGGAAGCAGATGAACGAATGCAACACTGTCTACATGATCAAGAGCTTGCCGATGCAATGGAAGACGCATTGGCAGAAATTTGCCTTACCAAAGATGATGGTGGTGTTGATTCGGAGTAA
More
|
|||||||
| Protein seq | MIVLDKLLNKIRRSVRIIGGNTVVKARFQDYCKAKKKPGRMFGIDVEYRWNTTYLLLRQLKGYEELIYVFINSMHVRMKDTDDDDDAFQHVNDKLYRVFCLYQTKLGGTPRVPKQTSQKKASKSSAVNLWKQYIGNDQASSSSENKSTWNPNLELNHYLVTNHTEHDTTLDGDDVELLGWWKEKERTLPMLPHFARDILLVPASSVSSEQAFSVTRRIIEERRSCLTPKTVESIFCLKDWMEADERMQHCLHDQELADAMEDALAEICLTKDDGGVDSE
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.0155415 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0262100 | SBH | 0.230694 | 0.245134 | 0.586166 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g16490 | RBH | 0.150141 | 0.250503 | 0.129081 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0262100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0008700 | RBH | 0.045046 | 1.941642 | 0.234632 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0008810 | RBH | 0.000000 | 0.397858 | 0.395330 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0008480 | SBH | 0.0 | 0.034305 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0148400 | SBH | 0.016377 | 0.0541495 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0137400 | RBH | 0.0014275 | 0.006722 | 0.8164365 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008600 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
