Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0103100 | OGI:12018030 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:6128710-6129216 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAGGCGAGCTCGTCAGGGCAGCCAACGGGAGAGGAGTAGCGGCGCGCGGGGGCCGGCGGGAGAGGAGGCAGCGCGCGCCGGCCGACGGGAGGTGGGCAGCGGGCGGCGACCTCGCACGTCACCACCGCACACCATCTCCGAGCCGTCGCCTTGCTCCCGCCGTCTTCGCCGCCGTCGCTCTGCTCCCTCCCTCGCCGACTACCCCTACGACACCGTGCCCAACAAGGTTGAGCACCTCTTCTTCGCCCAGCTCTACCGCGACCAAAAGCAGCGGGAGACGCGCATGTCGATGTCCAGGGCAGAGCGCGCACACGAGCTGTACGTGGACTACCTCAAGCCCATCATCACTGACGTGTCCAGGCTATGGGAGTTGCTGGAGTGGATACCGACGCCGGAGATTGAGCGCCTCTGCGACGGCGTGCGGCTGGTGAAGAGAGGGGAAAGGAAAGAAGAAAGGAGTGAGGATGAGGAAAAAGAGAGAGGGGAGAGGGAAGAAGGGAGATGA
More
|
||||||||||
| CDS seq | ATGAGGCGAGCTCGTCAGGGCAGCCAACGGGAGAGGAGTAGCGGCGCGCGGGGGCCGGCGGGAGAGGAGGCAGCGCGCGCCGGCCGACGGGAGGTGGGCAGCGGGCGGCGACCTCGCACGTCACCACCGCACACCATCTCCGAGCCGTCGCCTTGCTCCCGCCGTCTTCGCCGCCGTCGCTCTGCTCCCTCCCTCGCCGACTACCCCTACGACACCGTGCCCAACAAGGTTGAGCACCTCTTCTTCGCCCAGCTCTACCGCGACCAAAAGCAGCGGGAGACGCGCATGTCGATGTCCAGGGCAGAGCGCGCACACGAGCTGTACGTGGACTACCTCAAGCCCATCATCACTGACGTGTCCAGGCTATGGGAGTTGCTGGAGTGGATACCGACGCCGGAGATTGAGCGCCTCTGCGACGGCGTGCGGCTGGTGAAGAGAGGGGAAAGGAAAGAAGAAAGGAGTGAGGATGAGGAAAAAGAGAGAGGGGAGAGGGAAGAAGGGAGATGA
More
|
||||||||||
| Protein seq | MRRARQGSQRERSSGARGPAGEEAARAGRREVGSGRRPRTSPPHTISEPSPCSRRLRRRRSAPSLADYPYDTVPNKVEHLFFAQLYRDQKQRETRMSMSRAERAHELYVDYLKPIITDVSRLWELLEWIPTPEIERLCDGVRLVKRGERKEERSEDEEKERGEREEGR |
||||||||||
| Function | Isocitrate lyase [UniProtKB/Swiss-Prot:Q6Z6M4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0103100 | OsZS97_12T0103100.1 | Chr12 | 6128710 | 6129216 | + | makerRMon | ||
| CDS seq | ATGAGGCGAGCTCGTCAGGGCAGCCAACGGGAGAGGAGTAGCGGCGCGCGGGGGCCGGCGGGAGAGGAGGCAGCGCGCGCCGGCCGACGGGAGGTGGGCAGCGGGCGGCGACCTCGCACGTCACCACCGCACACCATCTCCGAGCCGTCGCCTTGCTCCCGCCGTCTTCGCCGCCGTCGCTCTGCTCCCTCCCTCGCCGACTACCCCTACGACACCGTGCCCAACAAGGTTGAGCACCTCTTCTTCGCCCAGCTCTACCGCGACCAAAAGCAGCGGGAGACGCGCATGTCGATGTCCAGGGCAGAGCGCGCACACGAGCTGTACGTGGACTACCTCAAGCCCATCATCACTGACGTGTCCAGGCTATGGGAGTTGCTGGAGTGGATACCGACGCCGGAGATTGAGCGCCTCTGCGACGGCGTGCGGCTGGTGAAGAGAGGGGAAAGGAAAGAAGAAAGGAGTGAGGATGAGGAAAAAGAGAGAGGGGAGAGGGAAGAAGGGAGATGA
More
|
|||||||
| Protein seq | MRRARQGSQRERSSGARGPAGEEAARAGRREVGSGRRPRTSPPHTISEPSPCSRRLRRRRSAPSLADYPYDTVPNKVEHLFFAQLYRDQKQRETRMSMSRAERAHELYVDYLKPIITDVSRLWELLEWIPTPEIERLCDGVRLVKRGERKEERSEDEEKERGEREEGR |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.021218 | 9.573182 | 5.6914395 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g12680 | SBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0007270 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0007360 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0098100 | RBH | 2.702624 | 7.2764385 | 5.3415705 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G007160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
