Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_12G0018700 | OGI:11003420 | 11/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr12:1084463-1088002 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGGATTGAAAGAACCACATGGGAAAAGAAACATACATTTCAAGTTGCAGTAGGAGGAAGCAAGAGATTTTGATTCAATCTGCTAATTCGATCTTCCTTTCATAAGTAGTCAAATTTAGAACAAGTTACATGTTATGTTAGTCCCAGTCAATCGACAGTACAATTAGTGACTACAGTCTCATACTAGCTTCTTGAGTTAATTCGTCGATTTCACTTGAATTGAAACATCTATTTCCTACATGTCAAATAGAGCTCATCACCTTGAACTATGAAGAACAGATCATAGGTGTGTATGGCTTCCAGCAGATCCGATCCAGAACAATGACGAAAGCCATGATCATCGCACAATCTACATTCGGTTGGACCTCAAGACTGAAAACATCTTCAGCAAGAGTCAGTGACAATGATGCTGCTCCAGCTTTCTTCCTCGTTATCCTTGCGACCTCCTCACCGCCGCTGTTGCGGATCTTGCAGCTTCTTCTCTTGAAACTGCCCTCGATTGAGAAGGCGGGAACATGGCCAGTACGATCTGACGACGCATGGGTACATCCTGACATGTGCACTTCTGCTTCATGACTGCTTTGCATAACTGAGCATTTTCTCATTGAGAAGAGTTGTTGTGATCTTGTCCTCTTGCCTTGGCCTTCTTCTGACGCTCTGTAACAATTCCATTGGTCATGCATGCTGATAATCTGTTGCAACAGCAGAAAGGAAAATAAAAATCTTAGTTCTTACTTACTCCCCATGGGTTCTATTAATGGTTTCTGTTCTTTTGGCCCATCTGCTGCACTTGTAACAAGAGGTAAAAGAACTTCAGTCGGAAAGTAGAATGAACTAGCGGATAAATCAAACTCTGTATGTAACTTCTCCATTTTTTAAGTTTTGTTTTTAACTCTGTATGGGATTTTGGGCAAATTAAAGCAGAACAGCATCAAAATAACCGAGGCTGGAACGATGAAAGCAATGCATTTTAATCTTTGGTCAGCTGATTTTGTCTGCAAGTGTTTAGACTAATTATTTTCCTAGCTAGATGTATTAGTGGAGGTAGTTGATAGCATTTGCCTAAAAACCGTCGGCATGCATGATAATTTGCCTTAAAATCTTTTTGGTGAGCTATGGTATCTTTTAGTATCTGTGAGACAAATAGACAAGACAAACATATATACTTGTGATTTGGTGAATATTTTGAGGAAACAGTGAAAGCCTGGAGATACATTTTTTTAAAAAAATCGAGAAGATGAAAGATCGGGTAGATGGACGAAACACTAGTCTCGGGGCTCTCGGCAAAGCAGGATTTGCAGTATTTAGAAGTCTTCAGTGAAGTTTTGGAAGCAAACTTGGTGATCGTTCTATATCTTGAGAGAAGATATGTAAAATGAAGTCTACATTCGGATGAGGATGATTGACGAGCAGAATATAAACGATTGCTGGTTGAATGTATGAAGAATTGATGATCGATCGACGATCGTTCATGAATGCTAATAGCTAACTCAATATATCGACCGAAACCGTACGTAAATATCTATTATATTATTAAAGGAATAGAAAAAGGAGCCTCCACGTTCGCTCTCAAGGCCTATAAATTCTCACATTAATCGGAGAAAAAGAAAAAGCAGTGTCCATATAGAAATACAATTTAGAAATAGCTGAAATTCGGAATTAAAAAATAAGGAATATTAGAAAAGGAGACTAGAGTCCATATAGAAATACAATTTAGAAATAGTTGAAATTCGGAATTAAAAAATAAGGAATATTAGAAGAGGAGACTAGAGTCCATATATAAATACAATTAGGAAAGAACTAAAATTCGGAATTAAAAATAAGGAATATTAGAAGTAGAGCATAGAGTCCATATAGAAATACAATTAGAAAATAATAGAAATTCGGAATTAAAAATAAGAAATATTAGAAGTAGAGTATAGAGTCATATAGAAATACAATTAAGAAAAAAAATAGAAATTCAGAATTAAAAAATAAGGAATATTAGAAGAGGTGACTAGAGTCCATATAGAAATACAATTAGGAAATAACTGAAATTCGGAATTAAAAATAAGGAATATTAGAAGTAGAGTATAGAGTTCATATAGGAATTTAAACCTAACTAAAATTCGGAATAAAAAGGAGCCTCCACGTTCACTCTCATGACTTAAAAATTCTCCCATTAATCGGAGAAAAAGAAAAAGTAGAGTCCATATAGAAATACAATTTAGAAATAGCTAAAATTCGGAATTAAAAAATAAGGAATATTAGAAGAGGAGACTAGAATCCATATAGAAATACAATTTAGAAATAATTGAAATTCGGAATTAAAAAATAAAAAATATTACAAGAGGAGACTAGAGTCCATATAGAAATACAATTAGGAAAGAACTGAAAATCGGAATTAAAAATAAGAAATATTAGAAGTAGAGTATAGAGTTCATATAGAAATACAATTAGGAAATAATAGAAATTCGGAATTAAAAATAAGGAATATTAAAAGTATAGTATAGAGTCCACATAGAAATACAATTAATAAAAAAAAGAAATTTGGAATTAAAAAATATTATAAATATAGTATAGAGTCCATATAGGAATTTAAAACTAACTAAAATCCGAAATAAACATAATAAAATCAAAAGTAGAGTTTAGAGTCTGTATAAAAATATAATTTACAAACAACTAAAATTCGAAATTAAGAAAAACATGGGAAGAAGAGTTTAAAGTCAATATAGGAATTCAATTTAGAAGTAACTAAAATTTGAAATTAAAAATTAAAGAATATTGAAAGATGAGTTTAGAATCCACATAGAAATACAATTAGAAATAATAAACATTCAGAATTAAAAAAAGAAATATTAAAAGACGAGTCTAGAGCCCATATAGGAATATATATAATTTACAAATAACTAAATTTTGATATTAAAAATAATTAATAACTAACACGTATATAAAATACAATATGAATATTACACATTAGTAGTTTCGTAAAGTTATTGCAAAATTTAAAATTATGTTATCATTGTAATATATTTTAATAATATAATAAGAAAACATATATGCTATTATATGAGAGAAAATATAATGATGCTAGCCGCGCAATTTGCGCGGGCCACCATACTAGTTATACTGATTGTCAGGTGTTAGGTAATACTAGTATACAATCACAAAGACAAAGATGCATGAATATAGCCTATAGGAGGTAATTAATTAATTAATTAATTAATCTGAGATGCAAATGCAAGATTTTTGCAGTGGATGAATCATGAATGACTAGAAGATCAGAGACAAGTGTACCTGTGGGGTGAGGGCGAGGAGAGGCGAGCCATGTCCATCCATGAGCAGCAGGTCGCCGGAGAAGAGCTTGCGGCGGCGCGAGTAGTTGTCAACACGGAAGGCGAGGCTGCCGGCGTCGTCGTAGACGGAGAAGCCGTCGGTGCCCTGGAACCCCATGCTGGACCTCTTCCACACCGTGTACACCGCCGCTCGCGGCGCTGCCGTTGAGGCGGCGGCGGCGGCGGCGGCATCTTGGCGTTGATACGAAGGGTGTATCCGACTCAT
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| CDS seq | ATGAGTCGGATACACCCTTCGTATCAACGCCAAGATGCCGCCGCCGCCGCCGCCGCCTCAACGGCAGCGCCGCGAGCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGGCACCGACGGCTTCTCCGTCTACGACGACGCCGGCAGCCTCGCCTTCCGTGTTGACAACTACTCGCGCCGCCGCAAGCTCTTCTCCGGCGACCTGCTGCTCATGGATGGACATGGCTCGCCTCTCCTCGCCCTCACCCCACAGATTATCAGCATGCATGACCAATGGAATTGTTACAGAGCGTCAGAAGAAGGCCAAGGCAAGAGGACAAGATCACAACAACTCTTCTCAATGAGAAAATGCTCAGTTATGCAAAGCAGTCATGAAGCAGAAGTGCACATGTCAGGATGTACCCATGCGTCGTCAGATCGTACTGGCCATGTTCCCGCCTTCTCAATCGAGGGCAGTTTCAAGAGAAGAAGCTGCAAGATCCGCAACAGCGGCGGTGAGGAGGTCGCAAGGATAACGAGGAAGAAAGCTGGAGCAGCATCATTGTCACTGACTCTTGCTGAAGATGTTTTCAGTCTTGAGGTCCAACCGAATGTAGATTGTGCGATGATCATGGCTTTCGTCATTGTTCTGGATCGGATCTGCTGGAAGCCATACACACCTATGATCTGTTCTTCATAG
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| Protein seq | MSRIHPSYQRQDAAAAAAASTAAPRAAVYTVWKRSSMGFQGTDGFSVYDDAGSLAFRVDNYSRRRKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPAFSIEGSFKRRSCKIRNSGGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNVDCAMIMAFVIVLDRICWKPYTPMICSS |
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| Function | Protein LURP-one-related 5 [UniProtKB/Swiss-Prot:Q9SSC7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_12G0018700 | OsZS97_12T0018700.1 | Chr12 | 1084463 | 1088002 | - | makerRMon | ||
| CDS seq | ATGAGTCGGATACACCCTTCGTATCAACGCCAAGATGCCGCCGCCGCCGCCGCCGCCTCAACGGCAGCGCCGCGAGCGGCGGTGTACACGGTGTGGAAGAGGTCCAGCATGGGGTTCCAGGGCACCGACGGCTTCTCCGTCTACGACGACGCCGGCAGCCTCGCCTTCCGTGTTGACAACTACTCGCGCCGCCGCAAGCTCTTCTCCGGCGACCTGCTGCTCATGGATGGACATGGCTCGCCTCTCCTCGCCCTCACCCCACAGATTATCAGCATGCATGACCAATGGAATTGTTACAGAGCGTCAGAAGAAGGCCAAGGCAAGAGGACAAGATCACAACAACTCTTCTCAATGAGAAAATGCTCAGTTATGCAAAGCAGTCATGAAGCAGAAGTGCACATGTCAGGATGTACCCATGCGTCGTCAGATCGTACTGGCCATGTTCCCGCCTTCTCAATCGAGGGCAGTTTCAAGAGAAGAAGCTGCAAGATCCGCAACAGCGGCGGTGAGGAGGTCGCAAGGATAACGAGGAAGAAAGCTGGAGCAGCATCATTGTCACTGACTCTTGCTGAAGATGTTTTCAGTCTTGAGGTCCAACCGAATGTAGATTGTGCGATGATCATGGCTTTCGTCATTGTTCTGGATCGGATCTGCTGGAAGCCATACACACCTATGATCTGTTCTTCATAG
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| Protein seq | MSRIHPSYQRQDAAAAAAASTAAPRAAVYTVWKRSSMGFQGTDGFSVYDDAGSLAFRVDNYSRRRKLFSGDLLLMDGHGSPLLALTPQIISMHDQWNCYRASEEGQGKRTRSQQLFSMRKCSVMQSSHEAEVHMSGCTHASSDRTGHVPAFSIEGSFKRRSCKIRNSGGEEVARITRKKAGAASLSLTLAEDVFSLEVQPNVDCAMIMAFVIVLDRICWKPYTPMICSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.558206 | 7.8449475 | 8.454411 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0120500 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02760 | RBH | 0.000000 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0120500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001300 | RBH | 0.000000 | 0.000000 | 0.252954 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001510 | RBH | 0.000000 | 2.722547 | 1.294546 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001530 | RBH | 0.000000 | 2.623124 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0001340 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001410 | SBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0018100 | SBH | 0.0605955 | 2.4604915 | 0.0534325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001400 | SBH | 0.0 | 0.469576 | 0.297061 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0019700 | RBH | 0 | 0.8155105 | 0.0236265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0001350 | RBH | 0.044726 | 0.687353 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001440 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001420 | SBH | 0.000000 | 9.212277 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001460 | RBH | 0.000000 | 0.0 | 0.191463 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0001450 | SBH | 0.159181 | 0.611071 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G001410 | SBH | 0.0 | 0.837317 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0001900 | SBH | 0.289231 | 19.983721 | 4.109836 |
