Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_11G0447700 | OGI:11083870 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr11:32070882-32078012 | ||||||||
| Gene Symbol | MTI1A, MT1a, OsMT1a, OsMT1e, OsMT-I-1a, OsMT1e-P, MTa, rgMT, OsMT-1, rgMT-1, - | ||||||||||
| DNA seq | TAAAGACTACATTTTTTTAAACTGCAGTAGTGCAGTTAATCTGTTTATTAGTACTATTATTATGCAAGCAAGACACATCTCACCTCAAAGAAAAAGGGAAAAAAAAGCAGAGAGAAAAAGTACTACAGTTGGAAACCCAATCTAACGGCTATTCTTGCCCCCACCACCGCCGCCGCCGCCTCCATCCGCCTCGCCTGACCTAGGCACACGCTCCGCCGCCGCCGCCGTTGCCCGCGCAGCGCATTCTCCATTCCCTTCTCTCGCGGAGCCCCAATCACACGGGAGAAACCGCCTTCCCCTAAACCCCGGCGGCGGCGGCGGCGGCGAACATCGGATCGTGGACGAGGCCTCCTCCACCGAAACCAAACCCCTTTTCCGAGGTCTACCTCCGCCCTCCGCTCCCTTCGCCTCTCTTGTGTTTAATTTGTCCACAATCTCCACTACAAGATCCAACTCTGTTTGATTCTTCTGGATTTTACTCCTCTTGATTGCCTAGGGTTCGTGTACGTCTTTCTCTCCTTAGGCTAATATTAGACTGATTCGGTGGTTTTAGCAATCTAGGGTTTGACGGTGAATAGAGGTTCAAATTTGGGCGTTTTCCCATTCTATAATCTTTAGTTATTCCAGGTCTCATAATCTAGGGTTTCAATGGATCTCAAGGGAAATAATACAGGGTTTGATGTCGGCATGTATTAAGGGAAATACCACCTCTGTTTCATCACAACCTATTTTGATGCGTCATGTTGAACTGAATCTGGCTGGCTTGACGTATGTGTGGATGGATTCATTGTGCAGTACTACGAGGCAAGAAGCACAGAGATAGTTGAGGCAGGGGAACCTTTGGGAGTGTGCTGATATGCCACTAATTGCTTAACACACCGAGAAGCTTCTCGGCATTTGCCAAATTTGGCTTCCCAAGACAGGTGCTCGCGGCTAACTATCATCTATTGAAACACTTGAGTTATTTTTGTATTTCTCTACATGTTTAATAATAAAGCCATTTGATTCCTACTGTTATCAATAACCTCCGCTACCTTTTCATATCCAACAAACCATATAAATGTTTCTTCTTTACATCTTCTGTAAACGATGTGCTTACTTCATGATAGTTTAGTTATTAGGCGTTCATTTGCTTTGACTATTCCCAGCTAAGTCTAACAAACGGGCTACTAGCATGAAAAGATCAGGTCATCATGCAGCAGTCCTTCATGATGTGCACTCTGTTCTGTTTATTTTGTTGCAAGAATCTAACTTTAGAACCAACCATCTTTTCCATCAACAACAGCTGGCTATTACAATGTTATATGGGAATAATCTATCCCAAAGGCCCTGAGGTTTCTAGAATGCACAACACATTGTTTGAAGCTTGATTTGGTAATTCAAATTTGATAGTATAAGTAGTCTTATGTTTTATGTAAGATACATACACTAGGTTATGTTTTCTTGTTAGGCCAAAGGGATAATGGTCATGTACCATGCAAATATATCTGCTCCCAATATGTTCTGTTCTCTTTTCTAGAGGACTAGTCTGTTTTCTTTGTCTATTTCATCAATGGAAGCTCATCTTTTCTGTAGGTCATGGGCATCTATTTCCATAGGCATGGAAGTAAAAATGTTACTTGTGAAGACTTTTGTGCACACATGTGTGGTGCAGGTAGGCCTCTTAACCTCCTATTTCTTTTTGAAAGACAGTAACGAGTATCATGTCTTTATTTATTTGGCCTTTTTGTGAATCAACCATAGTATCATGTCTTTATTTACTTGGCCTTCTTGTGAATCTACCAGTGCATGGGTTTTTTCCATGTATAGTTTTTCCGTGTATATTTAGTTCTGCTGTCATGTTTAAATATCTCACTATCTAGGTTAAGATTTTGCCGGAAAGTATGGCAGTAAACTAAATGTTAAAAGTCAGTCCAATATGTTTTGCCAAAGGTGTAAAGCAAGGCCATGAACCAAACATACATATTATACTTGGCTTATGTACTATTATCACAGCAGAAATGCATCAATTTCTGTTAGCACACTGAAATTATGCGCCAAAATTTCTTTTTCTGTTAGTCCTATTTTCTCCTGATGTTACAGCTAAGGTCATTTCACAGCACCTTGTGACATCTTAATATGGAGTTAGTTAATATTTGTAGTTGTGAATTATGTAGATATTAATACATACTATACCCCTTCAAGTCTCCTGTTAAGCTTTGCCTAATCTGTCTTAAGTTCCCCCTTTCTCCGCTTTCACTGATCCGCTCTTACATCTTGATTAACATGTATTGCATTTAGCAATACCCTCTCAAACTAACATGTAAAAGGAGTATCACCTAACAACACCTCATAGCATAAGCCCCTACCCATTTAAACCACATCGTGTTTTCTTTGCACCCATTCTTAATCGATAGTTCTTTCTTTTCCCCGAGGTGGTAAAAGAAGTGTGTTTGCACCCTTCTTAATCAGTAGCTCTCTCTTTCCCTGAGGTGGTGAAATATACGCTCCTGCATTGGTGAACCTCAAATAGAGGTACTTCATGTAGAAGAATCAATGAGAAAGTATTTTCTCATTTGTAAGTATGTCATAGAAAACAGTTGGCTTAATGATAAAAATACTTTCTGGTGCTTGTTGGCTTTGAAGAGAAACACTGAGAATCAACAAAGTATTTTTACTCGTTATAAAAACTGCCATACTGAAAGTATTTTCTCTGTCAGTACGGCAGTTCTCTTAACGAGTGAAAACACACTTTCTGGTGCTTGTTGGCTTTCAAGAGAAACACCAGAAGCTAATAATACGTTTAAGTACCCACATTGGAAGCATGATACTCTGTCATAGCATACCCGAACAGATATTTTCGTTTTTTTCCATAGCATATCTTGCTGTATTTATAGAAAAGGTGGACCATTAAAATCACTACAACATACCATAAGTACCATGTTTAAACTATGAACTCAGCCACTTAAAAATCCAACATCGTTCTTCATGATTCTGTGCATTTTTCTTTGATGTTTTCAAACTGCCTTGAGAGGCTATGCACCTAATTTTTTTATCTAATACTTTTGTTAGGTTGAACTTTAGTCAGGAAAGGTCTTGGATTCCATCGCAGCTCATGAGCATGTTGAAGTGGCTGTTATTCCACCTGCAGGTCAATCACCAAGGTAGGCTGTATACCGATAATGTTCATTCTCATGCCGGATGAACTAGTTCGTGAACAACACACTTCTCATGGTGGTTGAAGGAATGTATATGTGTTCAAAACACTTATCTTCAATTGAAACTTCTATTTACGTAATCGCAGCAGGGGAAACCCCCGCTGTTAATTTTCACCAAAAAAAGAGCACATACAATAATTACAAATGGGAAAGAGAAAATAAATTGAAACAAAGAAAGCCAGTCTAGGAACTGATCTTCAATTTAACTGAATTCTAAATCATGCTTTGGCTTACATATACGTTTAGTTGTGCAGCCTTACACTATCAATTGACTTGCATATTGGTCCGCTTGCTCTGGTATCCTTTCTTTCTATATAGGTACAAACAACTAATTGCAGTAATTGCTATAAAGCAACCCCAATGCTAAGACATGTTGCATCGCCAACAATATATCAGCTGTTAGATTGAACTAATCCTTAGATATCAGCCGTTACACAAATCAGTCTCATGTATAGACTGGCCCAGCTGGACTCCCCTGTTCCACTTTTGCCATGTCAGCCCATCCCCCATGCCTTCACTCGGCATCTGGAAGGGATGACTCCCACACGTGTGTCAGGAGGCGCTCCTTGCCTGTCCTGTCTGTAATTGCGTTAGAAATTGCCATTATTCATGATTGATCCCATTTATTCTCTTGAAAAGCCTTTTTTGAAATTCTTATTTAATCACTTAATCAACTTCCATCCCATGGGCATCCAAGCAGAACCTCTGTCTGCACCTGCCTCTCACAGCACGCTCCTTTTCCTGCTCTTGAACAGCTTTCATTTGTTCATTTTAGGTTTTTTTTTTCAACTATTCTTTCATCTGACACATTTAATATTGTTGATCTTTGTTTGTATGAAGGTCCCTGCAGTTTTTGGTGGTATTGTTTTGCATAATCTGGTCACTAGATGCCTACCAACTTCTTGAGATAGTGCCTGGCAAGAAAATCACTGTTCTTTGGCTAAATCTTTACATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAGTTTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGCGTTCTCTGCAGTTCATCTATATTCTTTTGTTGATGCTCTCTACTTACATAATGCGCTTCTCTATCTGTGTAAGTGATCGTTCCAACTATACTTGCATCATTCTGTTTTATCTAATCTCTCCTTTTCTTTACCCTGTGCACTTAATAGTGTTGTGCTGTTTGTGAAATCCAAGAAACAGAGCTCAAATAAATTCGCTAGTGTATGTTGCTGTTGGATTGTTCTGCAGCTTTTGCTTCCATTGCTATTAATTTGGGTAAGCACTTGGCCTTCCCATTGTCCAGTGATAGATCTACACATGGTAGTGATATATATAACAAGATGGCTTCAAGAGAGTTGATTGAGTTAAATGAACCCTCTTGCAGCCATATTATTGTTCTTTTTCCTGTTGTGTCTTTTCACTTAGCCCATTGAATTGTTGTGATGGACAGTGGCTGGGGCTTATTTAATGTGCCATACGAAAGTAATTATTCCATGTCAAACTGATGATTTGTGTGTTGAAAGACATAAACAAGCTGGTTTACAGATTTGAATTGTTCTGTAAACTATTCAAATACGCTACCATGTTCTGGATCCTGCTACTCTTGGCAATATTAGGATGGATTTCATCATACCCTGTAAATTTGATGTGCTTATTTGCTTAGGGCTATATAGGAAAACCAATGAGACACCTTTTTGTTAAGATAGAAAACAATATATGCAACTACATGTCTTAAAGTTCTTTGTAGTAGGTAAACCTTCATACTTTTTCACTTCTGAGCTGCCTTTCAAACAAGAGGATGATTGTATACCCGAGAAGGGGGAAAAGAGTATCTGCATGGCAGACGGTAAGGGAAATTCTTATTTCTACACATGAAAATGATACTCAATGTTTTGATAAGCTCTGTAAATAAGATTGTCAAAGTCTGTCTGTTTCACAATTTTTCAGCTTAATCGGAGTAGGCACAAAGCTAAATTTATTATGCCAATTCGTCTGTCGGCCAAAATTTGAGGACACCTGACCGTTACTTTGTTGATCAATATCTATACAGGTAATACACTGGATCTACTACCATGTTGTTATACAAATGAAAGCACATATTTTACCTGTTACTGTTGAGTTGCAGCATACTTTGGTTCTTTTAAGTGTTGCTCTGATATTGTTGTAAACTGAAGGAGGCCCCACGAAAAACAATGCATTGGCCTTGCAGGATACAATAATTACACACCAAGTTTGTTTGCTGACTAGATGTTGGCTCGCCATGTGATACCATCACGTTTTGCCACCAATTCTGAATCCGAACCACTAGAAGGTTAAATTTTTGCTGGTCGGCCGAAGGATTGGCCGACCAAATATCATTAAGAAAGAGGGGGGGGGGGGGGGGGGGCTAGAAGGTTAAACAATCTAGAAGATACACTTGATGGCTCGATAAATGTGCCTAGAACCTCTGTTGATCGATGTTGGCTGACAGTAAAATCAATTAGTGCTGTTGCTTTGATGAAAATGCTCCATGTATCTCAAACTGCGGGTTAAATATGGAGTCTCTGGTCCAGGAGCAGTTGCCAGTCACATTCAGGCCCCCTTTTGAATCCATATTTAACCAAATTGGGTGGACCTTCCACCTGTGTAGCTAAGAAAGAATAGATGTGCTTTGCTCTTTTTTCCGGACACATTTGGCATGGGGCCAGAACCTTAGTCGGAGATGTTAGGCGTTTAGATTAAACCAAAATACTTAGTTTGAAAAAATAGTACAGAACAAAAGACGCTAGATGCTTTGGTCAGCATAGTAAAATACAAACCCAGACCTTGTCTATTGCTCTTCTTCAAAAATAAGATGACAGCAAATAATTTACTTTACTATATTACAGTATATTGTAACTGGTATTGTGCCTGAAACAACTCTCCAGAATGCCTACGTGTATTTCATGTTACCACTATGCCATTGAGAAATTTTCCGTTTATATTATGTCTTCAGGCTGATCACAGTGCCTGATAGGGTAGGGGTAACAGTTATGTGCTTATCATATAGTACTTAATGACAAACAAGACATAGAAAATGTTTCACCGGTGTCATCTCTATGCTTGAAGTTTGGAACTCAAACCGTATTTTTTTTTCTTTTTGCAATATTGTAACCAATGAATTGTTTTTGTATTTCTTGTTTTAATGTTTCTATTCTAGCATTTTTGTAAAGTTCTCCATCCGTTAAAAAATTATAAGCATTTTTAGATTGTTTATCGTAAATTAAGTTCGAGGGAAAAGAATTTGGTGCCCCTCATCATGAGTGATGGTGATGGTGGGTGGGGGTAAGAAAGGAATATTTGAATAAGTGATTGATGGGATAAATAATATTTGTCAATAATTTTAGAAGTGCTTATGTTTTAGAACTGAGGGAGTATTATACAGTCCAATGCTTTGTCAAAATTACCGACACTTTGTTGCTTTATTTGCCCGTGGCAAAATGTATTAAAATTTCGTCTGGTGATATATCATTTATTCATACTCTACTCTTTTACTACATAGCAACACATTTCGATGAAGAGCCTGCGTCGTGGCAGAAAATCGCAATCGGCAAAGGAGAAATCCAACATATCGTGCGTCGGACAGAAGGAACTCTATCAATGATTGAAAAGAGGCTTCGATGCTGGGGCCGCGCCTACTCAGGGCGGACAAAACATTGACCCCTTCCGCCCATTCTTCCGGACATTAACGTCTTGCTTACATTAATTGGCCTTGTTCCATAAAATTATGTTTTAAAGTCGAGCATCTGCCCAGTAAAGGCCTGTGCAGACGCCTATTTGAGCCAAAATCTAAAAAAAAATATATATAAGCATTAAACCCTAAAAAACACGACAATTAGCCTTTGGTATAAAATTTCATGAGTACTACCTTGGGCTCAAAGACATCA
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| CDS seq | ATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAGTTTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGCGTTCTCTGCACAACACATTTCGATGAAGAGCCTGCGTCGTGGCAGAAAATCGCAATCGGCAAAGGAGAAATCCAACATATCGTGCGTCGGACAGAAGGAACTCTATCAATGATTGAAAAGAGGCTTCGATGCTGGGGCCGCGCCTACTCAGGGCGGACAAAACATTGA |
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| Protein seq | MASLFCHSHRHPVFLELGIPSLCNSLQEQVSAGVLCTTHFDEEPASWQKIAIGKGEIQHIVRRTEGTLSMIEKRLRCWGRAYSGRTKH |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_11G0447700 | OsZS97_11T0447700-mRNA-1 | Chr11 | 32070882 | 32078012 | + | makerRMon | ||
| CDS seq | ATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAGTTTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGCGTTCTCTGCACAACACATTTCGATGAAGAGCCTGCGTCGTGGCAGAAAATCGCAATCGGCAAAGGAGAAATCCAACATATCGTGCGTCGGACAGAAGGAACTCTATCAATGATTGAAAAGAGGCTTCGATGCTGGGGCCGCGCCTACTCAGGGCGGACAAAACATTGA
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| Protein seq | MASLFCHSHRHPVFLELGIPSLCNSLQEQVSAGVLCTTHFDEEPASWQKIAIGKGEIQHIVRRTEGTLSMIEKRLRCWGRAYSGRTKH |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_11G0447700 | OsZS97_11T0447700-mRNA-2 | Chr11 | 32071670 | 32078012 | + | makerRMon | ||
| CDS seq | ATGGCATCTCTGTTCTGCCATTCTCACCGACATCCAGTTTTCTTGGAGCTTGGCATCCCCTCCTTGTGCAACTCGTTGCAAGAACAAGTCTCTGCTGGCGTTCTCTGCACAACACATTTCGATGAAGAGCCTGCGTCGTGGCAGAAAATCGCAATCGGCAAAGGAGAAATCCAACATATCGTGCGTCGGACAGAAGGAACTCTATCAATGATTGAAAAGAGGCTTCGATGCTGGGGCCGCGCCTACTCAGGGCGGACAAAACATTGA
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| Protein seq | MASLFCHSHRHPVFLELGIPSLCNSLQEQVSAGVLCTTHFDEEPASWQKIAIGKGEIQHIVRRTEGTLSMIEKRLRCWGRAYSGRTKH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.6113975 | 4.0151955 | 13.213646 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0024910 | RBH | 4.922851 | 4007.884277 | 6.417356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0024910 | RBH | 1.903057 | 54.961384 | 1.616638 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0452000 | RBH | 0.4748305 | 1.680027 | 3.1046225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
