Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_11G0422600 OGI:11076630 | 3/16 Zhenshan 97 | ZS97RS3 | HZAU Chr11:29992824-29993603
Gene Symbol -
DNA seq

ATGAGCATGATGGGTGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTACACGAAGGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCCAATTTCAACACCAATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGGTGAAACTGTTGATCAAAAGGAATATAGAAGTATGATTGGATCTTTGTTGTATCTAACTGTTTTTAGGCCAGACATACAATTTGCTGTGTGTTTGTGTGCACGCTTTTAAGCTTCTCCTCGTGCTTCACATCGTCAAGCGGTCAAGCGAATAATGAGATATTTGAATCATACACTTGAGTTTGGAATTTGGTATTCTACTTCATCTTCTATATGCTTGAGTGGATATTCTGATGCTGATTTTGGGGGTTGTAGAATTGATAGGAAAAGTACTAGTGGAACATGTCATTTTCTTGGTACATCATTGATTGCATGGTCTTCTAGGAAACAATCTAGTGTTGCTCAATCAACTGCTGAATCTGAATATGTTGCTGCTGCTAATTGTTGTTCACAGATTCTTTGGCTTTTATCTACTTTGAAAGATTATGGTCTTACTTTTGAGAAAGTAACTCTCTTTTGTGACAATACAAGTGCTATTAACATTGCTAAGAATCCTGTTCAACACTCACGCACAAAGCACATTGATATTCGTTTTCACTTTTTGAGGGATCATGTTGAGAAAGGAGATGTTGAATTGCAGTTTTTAGACACAAAGTTGTAA

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CDS seq

ATGAGCATGATGGGTGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTACACGAAGGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCCAATTTCAACACCAATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGGTGAAACTGTTGATCAAAAGGAATATAGAAGTATGATTGGATCTTTGTTAATTGATAGGAAAAGTACTAGTGGAACATGTCATTTTCTTGGTACATCATTGATTGCATGGTCTTCTAGGAAACAATCTAGTGTTGCTCAATCAACTGCTGAATCTGAATATGTTGCTGCTGCTAATTGTTGTTCACAGATTCTTTGGCTTTTATCTACTTTGAAAGATTATGGTCTTACTTTTGAGAAAGTAACTCTCTTTTGTGACAATACAAGTGCTATTAACATTGCTAAGAATCCTGTTCAACACTCACGCACAAAGCACATTGATATTCGTTTTCACTTTTTGAGGGATCATGTTGAGAAAGGAGATGTTGAATTGCAGTTTTTAGACACAAAGTTGTAA

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Protein seq

MSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGETVDQKEYRSMIGSLLIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAANCCSQILWLLSTLKDYGLTFEKVTLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKL

Function Retrovirus-related Pol polyprotein from transposon RE1 [UniProtKB/Swiss-Prot:Q94HW2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_11G0422600 OsZS97_11T0422600.1 Chr11 29992824 29993603 + makerRMon
CDS seq

ATGAGCATGATGGGTGAGTTATCGTACTTTTTGGGATTGCAAATTAAGCAAACACCTCAAGGTACTTTTGTGCATCAAACGAAGTACACGAAGGATCTTTTGAGACGGTTCAAGATGGAGAATTGCAAGCCAATTTCAACACCAATTGGTTCTACAGCTGTGTTGGATCCTGATGAAGATGGTGAAACTGTTGATCAAAAGGAATATAGAAGTATGATTGGATCTTTGTTAATTGATAGGAAAAGTACTAGTGGAACATGTCATTTTCTTGGTACATCATTGATTGCATGGTCTTCTAGGAAACAATCTAGTGTTGCTCAATCAACTGCTGAATCTGAATATGTTGCTGCTGCTAATTGTTGTTCACAGATTCTTTGGCTTTTATCTACTTTGAAAGATTATGGTCTTACTTTTGAGAAAGTAACTCTCTTTTGTGACAATACAAGTGCTATTAACATTGCTAAGAATCCTGTTCAACACTCACGCACAAAGCACATTGATATTCGTTTTCACTTTTTGAGGGATCATGTTGAGAAAGGAGATGTTGAATTGCAGTTTTTAGACACAAAGTTGTAA

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Protein seq

MSMMGELSYFLGLQIKQTPQGTFVHQTKYTKDLLRRFKMENCKPISTPIGSTAVLDPDEDGETVDQKEYRSMIGSLLIDRKSTSGTCHFLGTSLIAWSSRKQSSVAQSTAESEYVAAANCCSQILWLLSTLKDYGLTFEKVTLFCDNTSAINIAKNPVQHSRTKHIDIRFHFLRDHVEKGDVELQFLDTKL

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0 0 0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0656500 SBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g46806 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os11g0656500 SBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0402800 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0118400 RBH 0.004305 0 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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