Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_11G0260200 | OGI:11046380 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr11:18636838-18640840 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTTTTCATAATTATCTCGCTCCCTTGAGATGATATTGTTGCTGATAAGTGTTAAGCACACGTTCTCCTTTTTTTACATGAAGAAATTCATGTGTTTTCCTTTTTCTAAAGAAAAAACTTCTGAGCTGTAAATGGTGGTACCATTGCTGAATAGCAAATAACACCTTGTATGCAAATCTACATGCTGTGTGCTCATTCCTATGAAATATTAACAGAAACCAAAAAGGGATGAAACTTTTTCCCCCCTGTATTTCACTGTACAGCACAACAATGTCGTGCCGGTCACTTCCGAATCAACTAGTTGGTCGATGCCTTCTTCTACGTCTTGCTTTCAAAATTAAACTTGGTTGTTCTTGTTCAACTATAACCTCGAAGCTGTGGCTGCAGTGGAAACCTTTGGACTAGGATTCTGAACTAGCACCAGCAATGGCTGTGAAGGACAACCTGAGTTGTTATGAGAAGTTCTCTGCAATGGTGCAATGTGTTAGACTCATAGATTTTGGTACTAGTGCAGTAGAGCTGCAAGTATCAGTGGTTTTGGTAGTACAGTAGTGCCTACCACCCCGACGTGCCAATGGTCTGATACGAGGCCTTTGAAATCGGCTGCATCCATTTCCTGTGCGTCGTCACATTGACAGCATGGGAAATTGTCATACTTGTGCAGATTAGAAAATATTAAAGAAATACTACTAAGTAGCAAGATTATAGATTGTATAATTTTAGAACATGTTACTGAACTTACCACACTGTAAATAGGAGGCATAGCAATCTCCCAAGTTGATTTCATAAGGGGTACAACTGGAAGATGGAGTGATGCTTCAGGTATCCTGAAATTCCACCTAAAAATGGGAACAAGAACTGCGTCACATCTGCTTTGATCTCATTTGGCTGTTTTGCATTACTTTCTTCCATCTAGATTAAGAAATGATTTTGACTCACCCAATATACATGAATATGCAAAACTGTACCCATTCACGCACCAATACACGAAACCAGTAGTTATCTGGTGTATCATCAGCCCTCATGTACACCTGAAGGCACAGATGGCACTATTAGAATTCAGGAGCATTGCCAAACCAAACAGATCATAGCAGAACACAATGCCATAGTATGCTTAAGTCATACCATGATGAATGCCACCAGTGCAACCTGCATTGTACCTTGAAATCTCCTGAAAAGGGGAAAATATATGAATAAGGACATGACAATTTCTCAGAGTTTTGGTACTAAAATATTTTCAAGAATATGATGAAAAGGAAGATAGGAAATACAGAGTGGAGTAAAACTGCTTACTTGAACATTGTGTACTTTGTGTTCAGTGCCCCATGTAGTGAATGGATGTCTTCCTCCTCTATGAAATTCAGTTGTTCCCTTAGAAGCAAGAGGTTTTGGGATGTGCGGTGAAATATGATGTAAAATGACATAAAGTAGTTGATAAGAAGAAAGACCTGCACCAAACATGGGAAATCTCATAATATGCCGTACTCATGACTAATTCTAGAAGCCCAATGAGTCAAAATGAAAATAAAAAATAATGAAATGCTAAAAAACCTTTCAAAAAAGTAATTTTTAAAACTTCCAGTGAGGCCTTACTGTGAAATAAGGAACTGCAGCTTTGTAACCGATTAGACTAAGGTAGATAAGGCATCCCAAACAAGCGGTTGTGCGTCTCTCTCTGATCGAGAGGCGCTCGCACATGATGCAGTAACCGTGTGATATGAGCATGAACGAAACGAAGGAAGTCGTCTGGAAGAGAATCCCCGTAACGTACACGCCAAATGACATCCATAGCGAGCATGTCTGAAGGTGCATGCATGAGTACCTGGACATCAACCTAAAATTTCAGTACTAGAAAAGATTTGTCTGAACAGCTTTAGGGACTTGTTCGAACTCCGATCACTAGTATTCAGAGATCAAAGATGTAAGTTAACTTAAGTTCAGATTGCTCACCAGAACAGAAATGAAAGCCCCATTTGGAGGGCTTTGATCAAGGGCACCAAAGCCAGGATCCACTGAAGGTTATTTACCTGCTACAGGGAAACAAAATTGCTAAAGAACTAACATAATCAAACAGTTGAAACATGACTCTGAAATTGACACTACTAAAAAAGACACATATAAGTCGGCACTATATGTGCCAGAATAGTAAAACCGGCACTTATAGTGCCTTTCCTGCCCATGTGTCCACCCACGCGTCCATCCACGAGCCAAAATGTCAAGAACCGACACCTTTATCCTCAAACATGTGCCAGTTTTAAAAAAGAACCGACAACTATTACTGCTGAAGATGTCAATTTTTAAAAACAATGACACCTATAATTTATTATAGGTGCCGGTTCTTTTAAAAAAAGATAATTGCTCATTTGACCCTAATTTGGAATATAACTACCAATTTGACCCTATATTTTTATGTTTGATTATTTGACCCTGTTTTTTAAAACCGATGTTACCTCTGACCCTGCTTTCACTATACCGTGGGTTTTTCATTTTTAAAAAACCAAAAAAAAAATATTTGCAAGCCTAAGTGACTAAAATGCCCCATGAATATATTAACCATGTCCTCCTACCACTCATTCACTCATTTCTTATCATCTGTCTCACCAGAGCACAAAGGGTGGGAGGAGCAACAGCGATTGCGGCTCGGCAGTGGCGGCGCGACGTGGAGGACCACCGGCGGCGCGACGAGCAGGACCACCAGCGTCGGCGACTGCATCGGCTCGGTAGCAGCTGAGTTGGCTCAGCGGCGGAGGGGTGACGAGGACAGGAGGACCGCCGGTGGTGGCTGCTGCTAAGGAGGGATGCCATCTCCGAGTTCACTGTTACCCGCAGTGAGAAGGGTGGTGCGGCGTCAGATGAGTCATGGTAGAAGTGGTTTTTTAGGTTTTTGTTAAAACCGTTAAATGCCCTTAACAGAAAAGGGTCAGAGTATAGCTTCATTTTTTTAAAAAGAGAATCAAATAAGCAAACTAACGAATCAGTAGTTAGATATTCAAATAAGATCAAATGTGCAATTGCCACTTAAAAACCCCGGCGCCTGAAAAAAATCGACCGCGTCTTATCCAGTCCGCCCGTCCGAATCCCGACCGTGAGGATGCAACCCTCCCAACTCCCTTTCCTCTCGTCGTCCTTATCCCCTTTCCTCTCGCGATTCTCTCTCCCTCTCCTCCGGTCTTCCCCACCCGCGAGCACCGATGGCGCACCAGCGGCTGGACTGCCCGGATCCGGCGCCACTCCTCCGGCGGCCTCACATGGGGAGGGAGCTTCGGGGGGCCTCCCCACGGTGTGGGCTCGGCGGGAGGCCTCCACGGCGGCGTGACGGACGGTGCAGTGGGTGGCCTCTCCCGGCGGCGTGACCATGGAGGGGCGCAGCGGGTGGCCTCTGCTCTGCGGCGGGCAGCCAGATCGGGCTGGTGTGCTCGATGGCGGGAGGATTCACCACGGTGTGCTCTCTCTAGCTTCCTTCCTTGTTGATTTTTGATTTTGTAATTTCGGTCTCTCCGTGCTGTTATTGGGTGCATGGTGATGAGGTTGTGAGAAATTTGTTCTCGATTCTTGGTACATACATGGATGATGATGATGATGATGAATGTGCTTTTTCGTACTAGTGTGATACTAGCTGCCAGCAGTTTAGTAGAATTTTGGTGGAAGAATCATTGCTCTAAGGTCCCTATTCAATGACCAGTCATTCAAAATGAAGCCATAATCAGTCTTCTAAAAAAACCATAATCAAAAACTGCACACTACCATGCATACAACTGAAGAACAAGAGCACCATGCCACCAAACACATCACCCGAATTCAGGGCAAAACAAAACAAAACGGCAAAATGCAGGGACAATACCTGGAAATGCCGACTCCTCCAGGAGCTGGAGGCCCAGCAGAAGCCGGAGGCCGCCCATATCGCCAAGAACCCGAGGTACAGCCACGGGAGAGGCTGATAGGCTCTGCTCAACACCGGGAGAGGAGACGAAGCGTCCTGCATCATCCTCTTCTTCTTCTTCTTC
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| CDS seq | ATGATGCAGGACGCTTCGTCTCCTCTCCCGGTGTTGAGCAGAGCCTATCAGCCTCTCCCGTGGCTGTACCTCGGGTTCTTGGCGATATGGGCGGCCTCCGGCTTCTGCTGGGCCTCCAGCTCCTGGAGGAGTCGGCATTTCCAGAATCGAGAACAAATTTCTCACAACCTCATCACCATGCACCCAATAACAGCACGGAGAGACCGAAATTACAAAATCAAAAATCAACAAGGAAGGAAGCTAGAGAGAGCACACCGTGGTGAATCCTCCCGCCATCGAGCACACCAGCCCGATCTGGCTGCCCGCCGCAGAGCAGAGGCCACCCGCTGCGCCCCTCCATGGTCACGCCGCCGGGAGAGGCCACCCACTGCACCGTCCGTCACGCCGCCGTGGAGGCCTCCCGCCGAGCCCACACCGTGGGGAGGCCCCCCGAAGCTCCCTCCCCATGTGAGGCCGCCGGAGGAGTGGCGCCGGATCCGGGCAGTCCAGCCGCTGGTGCGCCATCGGTGCTCGCGGGTGGGGAAGACCGGAGGAGAGGGAGAGAGAATCGCGAGAGGAAAGGGGATAAGGACGACGAGAGGAAAGGGAGTTGGGAGGGTAAATAACCTTCAGTGGATCCTGGCTTTGGTGCCCTTGATCAAAGCCCTCCAAATGGGGCTTTCATTTCTGTTCTGGTACTCATGCATGCACCTTCAGACATGCTCGCTATGGATGTCATTTGGCGTGTACGTTACGGGGATTCTCTTCCAGACGACTTCCTTCGTTTCGTTCATGCTCATATCACACGGTTACTGCATCATGTGCGAGCGCCTCTCGATCAGAGAGAGACGCACAACCGCTTGTTTGGGATGCCTTATCTACCTTAGTCTAATCGGTTACAAAGCTGCAGTTCCTTATTTCACAGTCTTTCTTCTTATCAACTACTTTATGTCATTTTACATCATATTTCACCGCACATCCCAAAACCTCTTGCTTCTAAGGGAACAACTGAATTTCATAGAGGAGGAAGACATCCATTCACTACATGGGGCACTGAACACAAAGTACACAATGTTCAAGAGATTTCAAGGTACAATGCAGGTTGCACTGGTGGCATTCATCATGGTGTACATGAGGGCTGATGATACACCAGATAACTACTGGATACCTGAAGCATCACTCCATCTTCCAGTTGTACCCCTTATGAAATCAACTTGGGAGATTGCTATGCCTCCTATTTACAGTGTGGAAATGGATGCAGCCGATTTCAAAGGCCTCGTATCAGACCATTGGCACGTCGGGGTGAGAACTTCTCATAACAACTCAGGTTGTCCTTCACAGCCATTGCTGGTGCTAGTTCAGAATCCTAGTCCAAAGGTTTCCACTGCAGCCACAGCTTCGAGGTTATAG
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| Protein seq | MMQDASSPLPVLSRAYQPLPWLYLGFLAIWAASGFCWASSSWRSRHFQNREQISHNLITMHPITARRDRNYKIKNQQGRKLERAHRGESSRHRAHQPDLAARRRAEATRCAPPWSRRRERPPTAPSVTPPWRPPAEPTPWGGPPKLPPHVRPPEEWRRIRAVQPLVRHRCSRVGKTGGEGERIARGKGIRTTRGKGVGRVNNLQWILALVPLIKALQMGLSFLFWYSCMHLQTCSLWMSFGVYVTGILFQTTSFVSFMLISHGYCIMCERLSIRERRTTACLGCLIYLSLIGYKAAVPYFTVFLLINYFMSFYIIFHRTSQNLLLLREQLNFIEEEDIHSLHGALNTKYTMFKRFQGTMQVALVAFIMVYMRADDTPDNYWIPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAADFKGLVSDHWHVGVRTSHNNSGCPSQPLLVLVQNPSPKVSTAATASRL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_11G0260200 | OsZS97_11T0260200-mRNA-1 | Chr11 | 18636838 | 18640840 | - | makerRMon | ||
| CDS seq | ATGATGCAGGACGCTTCGTCTCCTCTCCCGGTGTTGAGCAGAGCCTATCAGCCTCTCCCGTGGCTGTACCTCGGGTTCTTGGCGATATGGGCGGCCTCCGGCTTCTGCTGGGCCTCCAGCTCCTGGAGGAGTCGGCATTTCCAGAATCGAGAACAAATTTCTCACAACCTCATCACCATGCACCCAATAACAGCACGGAGAGACCGAAATTACAAAATCAAAAATCAACAAGGAAGGAAGCTAGAGAGAGCACACCGTGGTGAATCCTCCCGCCATCGAGCACACCAGCCCGATCTGGCTGCCCGCCGCAGAGCAGAGGCCACCCGCTGCGCCCCTCCATGGTCACGCCGCCGGGAGAGGCCACCCACTGCACCGTCCGTCACGCCGCCGTGGAGGCCTCCCGCCGAGCCCACACCGTGGGGAGGCCCCCCGAAGCTCCCTCCCCATGTGAGGCCGCCGGAGGAGTGGCGCCGGATCCGGGCAGTCCAGCCGCTGGTGCGCCATCGGTGCTCGCGGGTGGGGAAGACCGGAGGAGAGGGAGAGAGAATCGCGAGAGGAAAGGGGATAAGGACGACGAGAGGAAAGGGAGTTGGGAGGGTAAATAACCTTCAGTGGATCCTGGCTTTGGTGCCCTTGATCAAAGCCCTCCAAATGGGGCTTTCATTTCTGTTCTGGTACTCATGCATGCACCTTCAGACATGCTCGCTATGGATGTCATTTGGCGTGTACGTTACGGGGATTCTCTTCCAGACGACTTCCTTCGTTTCGTTCATGCTCATATCACACGGTTACTGCATCATGTGCGAGCGCCTCTCGATCAGAGAGAGACGCACAACCGCTTGTTTGGGATGCCTTATCTACCTTAGTCTAATCGGTTACAAAGCTGCAGTTCCTTATTTCACAGTCTTTCTTCTTATCAACTACTTTATGTCATTTTACATCATATTTCACCGCACATCCCAAAACCTCTTGCTTCTAAGGGAACAACTGAATTTCATAGAGGAGGAAGACATCCATTCACTACATGGGGCACTGAACACAAAGTACACAATGTTCAAGAGATTTCAAGGTACAATGCAGGTTGCACTGGTGGCATTCATCATGGTGTACATGAGGGCTGATGATACACCAGATAACTACTGGATACCTGAAGCATCACTCCATCTTCCAGTTGTACCCCTTATGAAATCAACTTGGGAGATTGCTATGCCTCCTATTTACAGTGTGGAAATGGATGCAGCCGATTTCAAAGGCCTCGTATCAGACCATTGGCACGTCGGGGTGAGAACTTCTCATAACAACTCAGGTTGTCCTTCACAGCCATTGCTGGTGCTAGTTCAGAATCCTAGTCCAAAGGTTTCCACTGCAGCCACAGCTTCGAGGTTATAG
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| Protein seq | MMQDASSPLPVLSRAYQPLPWLYLGFLAIWAASGFCWASSSWRSRHFQNREQISHNLITMHPITARRDRNYKIKNQQGRKLERAHRGESSRHRAHQPDLAARRRAEATRCAPPWSRRRERPPTAPSVTPPWRPPAEPTPWGGPPKLPPHVRPPEEWRRIRAVQPLVRHRCSRVGKTGGEGERIARGKGIRTTRGKGVGRVNNLQWILALVPLIKALQMGLSFLFWYSCMHLQTCSLWMSFGVYVTGILFQTTSFVSFMLISHGYCIMCERLSIRERRTTACLGCLIYLSLIGYKAAVPYFTVFLLINYFMSFYIIFHRTSQNLLLLREQLNFIEEEDIHSLHGALNTKYTMFKRFQGTMQVALVAFIMVYMRADDTPDNYWIPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAADFKGLVSDHWHVGVRTSHNNSGCPSQPLLVLVQNPSPKVSTAATASRL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_11G0260200 | OsZS97_11T0260200-mRNA-2 | Chr11 | 18636838 | 18640840 | - | makerRMon | ||
| CDS seq | ATGATGCAGGACGCTTCGTCTCCTCTCCCGGTGTTGAGCAGAGCCTATCAGCCTCTCCCGTGGCTGTACCTCGGGTTCTTGGCGATATGGGCGGCCTCCGGCTTCTGCTGGGCCTCCAGCTCCTGGAGGAGTCGGCATTTCCAGGTAAATAACCTTCAGTGGATCCTGGCTTTGGTGCCCTTGATCAAAGCCCTCCAAATGGGGCTTTCATTTCTGTTCTGGTACTCATGCATGCACCTTCAGACATGCTCGCTATGGATGTCATTTGGCGTGTACGTTACGGGGATTCTCTTCCAGACGACTTCCTTCGTTTCGTTCATGCTCATATCACACGGTTACTGCATCATGTGCGAGCGCCTCTCGATCAGAGAGAGACGCACAACCGCTTGTTTGGGATGCCTTATCTACCTTAGTCTAATCGGTTACAAAGCTGCAGTTCCTTATTTCACAGTCTTTCTTCTTATCAACTACTTTATGTCATTTTACATCATATTTCACCGCACATCCCAAAACCTCTTGCTTCTAAGGGAACAACTGAATTTCATAGAGGAGGAAGACATCCATTCACTACATGGGGCACTGAACACAAAGTACACAATGTTCAAGAGATTTCAAGGTACAATGCAGGTTGCACTGGTGGCATTCATCATGGTGTACATGAGGGCTGATGATACACCAGATAACTACTGGTTTCGTGTATTGGTGCGTGAATGGGTACAGTTTTGCATATTCATGATACCTGAAGCATCACTCCATCTTCCAGTTGTACCCCTTATGAAATCAACTTGGGAGATTGCTATGCCTCCTATTTACAGTGTGGAAATGGATGCAGCCGATTTCAAAGGCCTCGTATCAGACCATTGGCACGTCGGGGTGAGAACTTCTCATAACAACTCAGGTTGTCCTTCACAGCCATTGCTGGTGCTAGTTCAGAATCCTAGTCCAAAGGTTTCCACTGCAGCCACAGCTTCGAGGTTATAG
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| Protein seq | MMQDASSPLPVLSRAYQPLPWLYLGFLAIWAASGFCWASSSWRSRHFQVNNLQWILALVPLIKALQMGLSFLFWYSCMHLQTCSLWMSFGVYVTGILFQTTSFVSFMLISHGYCIMCERLSIRERRTTACLGCLIYLSLIGYKAAVPYFTVFLLINYFMSFYIIFHRTSQNLLLLREQLNFIEEEDIHSLHGALNTKYTMFKRFQGTMQVALVAFIMVYMRADDTPDNYWFRVLVREWVQFCIFMIPEASLHLPVVPLMKSTWEIAMPPIYSVEMDAADFKGLVSDHWHVGVRTSHNNSGCPSQPLLVLVQNPSPKVSTAATASRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.24914 | 0.3905125 | 0.070124 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0466300 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g27795 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0466300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013470 | RBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013450 | RBH | 0.309155 | 0.0 | 0.383751 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013220 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013520 | RBH | 0.0 | 9.483379 | 0.792358 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0245700 | RBH | 0.589221 | 0.8477645 | 0.627619 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013470 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013570 | RBH | 0.044450 | 0.090255 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013290 | RBH | 1.667522 | 4.529594 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013130 | RBH | 0.093684 | 0.0 | 0.222590 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013470 | RBH | 0.086107 | 3.372896 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013260 | RBH | 0.067108 | 0.0 | 0.443789 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0013460 | RBH | 0.0 | 0.000000 | 0.000000 |
