Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_11G0090000 | OGI:11016520 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr11:5605406-5610032 | ||||||||
| Gene Symbol | Os_F0690, Fbox-12-pseuso | ||||||||||
| DNA seq | TTACAACATTTGACTATGGATAGTGCTAACTGGCTTTGTAACTGAGTAATAGGAAGCATGGGTGTTTATAGATAACTCACAGTCAGAACATTGAATACTAATATTCTCCAGTGGTACGCCATTGGCATTCAAGATCTTCAAAATTTTTAGAACAATTCCATCAACATTTTTGCACTCGATTTCAACTTTTTGAAGATGACTAGCTGCAAATGATTGTTCCCATGGTTTGTAACTGTCATCCATTACCCCTAAATTGTTGGGTACCTGAATCTAACAAATATTTTAGTAAATAAATCAAGCACAACCTAGATAACACAGGTATACATGTACAGAATATAATAATACCTTTGAAAGATTAAGCGTAAGCTTTTCAAGAAGTGGTGCGTGTTGGAGAAACCAAGTTAATGCACTGAGGTCAGGAGGCACAAACCATGATTTGAGCACCAAAGTCTTTAACTTGCTAAATGGAGGGCACAATTCTAAATCCCTGTTGAAAAGATACTACACAAAGTGCAAGGGCACTAGATCAAATAACAAATATACAGAAAAAAATTAAAATACAAACAGCAACCATATCCTAGTAAATGTATGATGAAAAAGGTATAGAATTTATCGTTTTGTAGGTTCATCTAATTTATAGACAAATATCCATAAGATTGCCGAACTGAATTAGTCAGCAATTACTAGCTATCTAGTATTTTTTTTTTAGTTGGATAATATAAGAAACTTCAAAACATTCGGTAATGATATAGCATGAAAATCAGGAAAAATTAGGTTGAGACGTGATGATTTCTAAGGAACAAATGAAATATGCTTACGCGTGAAGTCATATGTTAATGCAATTTAGGTATGGATATGGTTACAGCACCCCCCCCCCCCCCCAAAAAAAAAAATATAATAATAATAATAATAATAATAATAATAAGGGGTAAAACTGAAGAGTTAAGAGTAATGAGAGAGGAAACTACAAGCATACCACTTTAGGGAAAGCTAACAACTTCAATTCCGTAGCTTCGGTCAAGCCCTTAAGAAACACGCATTCATCATGCCCATCGTAGTCGCGACAAGCCATACATTCATCATCTTCGCAATCGTTGTAGAAACCATTTAAACATTGATCATCACAACCATAACCAAGCCTAACTGTTGCAGTCGCCAATGACGGCATGCCGTCAAGCCGAGGAGCCCTCCCCGAATTTTTATCGAAGAAGAATGAGACGAGGCTAGGGAAAGAGATCCAAAACCTGTGGTTGGTAAAGAATGAACAGAACATGATGATCAGATGCTTCACGGATGGGGAGCACATCTCCAAAGCATCCATCTGGCAACCGTGCATCTTGAGATCCAACAATGCCGGACAGCTCGTGAAATCAAGAACCCGGTTGCTAGCCCGGACACCCTGAAGCTCCAAGAAAGTGAGGTTTTGGGAGACGAGGTGTTCGTCGAAGATCTGGAAGGAATTCCGGGAGTTGACGAAGATTATGAACCGGAGCACCCTGGCATGGTGGCGGAGAGCGCTGCGGATCCAGCGGTTGCCACGCCGCTCTTCGCCGGGGGAGGGCTCGTCGAGATCGAGATCGAAAACGCAGGTGTCCAGCGGCGCGCCGCCGCGGCGGAGGCGGAGCAGGCGGTCGACGAAGCGGGCGAACGCGTCGGCGGTCGCCCACCCCCTGGGGCCGACGACGCGGACGGCGGGCACGGACCTCCAGAGGTCGCGCCAGCGCCTGGCAAGCACGCAGGTCCGCACCGCGTCCCGCGACGGCAGGAGGGAGAGGACTTGGTGGAGGAGGTCCTCCGGGAGGGCGCTGATGCGGTCCTCACCGCTCGCCATGGCGCGCGGGCTCTTCCTTGCCGGTCGGGCACTCCGTCGAACAGGTGGCGTGCGTCGCCGCCGGGCGCCGGCGCTGCGAGTGGCGACGCCAAGAACCGACGAGTGCCTGGATAAAATGAGTGAGAGTGAAGACTGAAGGTTTCAGTCAGTCGAAGAAACACTCGAATTAATTCAATTCTCCCCAAATTTCTCCTTGCGTAGAGTTGTCACATAATTATGCTTCTAAAATGTTTTTTCCTTCAACAAGTGAAACCAAACAGAAAAAAGAATACGAAGTGAGCGCAACTCAACTAGTTAGCTGGTTAGATTTCTTATTATTATGAAATCAGCTCACCCAAGTTCAAGTCGTAGACTTACACGGGTGCTCATATTTACAATTAAATTGTTCTTTCGGTGGTACCTATCGACAAACCTTGACAGTGAGGCGTCCGTGTTGACTTCGTCAATCTCAAGATATTTCAGCAGCAGATGACGTACATGTCGGTGACAGCCAGGAAGCCATAGATATGGCGCGTAATAGCCGTCGGCAAGAACGGCGATGAAGGAAGGAAGTAGAGCCCAAGGGTAATTTTGTCCAGGATGCGTCTGGTTGAGAGTGATATTTTATTGAATTCTTTTTAAGTAGTGGCATTTGGCCACGAAGCCACTTTTGATGATGGTGTAATCCCAAATTTCTCCTTTAGTTATGGGTATATAATTCAAGAAATTTTCCACTAATGTTGTATCGGGCATATGAGGTAATGTACTAAGTGCCCCTTTGAATCGCGGGATTGAGAAAACGTAGGAATAGGAAAAACTTAGGATTTTGATAGAATGTAGGGTCCCTTTGATTTGGAGGAAAAACATAGGAATTTTAGAGGATTTTAATCTTATAGGAAAATTTCCTATGAAGCCCTTTGAAACAAAGGATTGAATCCTATCTAAGGGCCCCTTTGAATCGCAATATTGAGAAAACGTAGGAATAGGGAAAACGTAGGATTTTGATAGGAATGTAAGTGTAAGACAGAGGATTGCAAAACGTAGGAAAAACATAGGAATGACCGTTTGATTGAACTACAGGAAAAACACAGGAATTGGATGAGAGAGATAGACTCAAAGGAAAGTTAGCAAGAGGTTGAAGCTCTTGCTAAATTTCCTCCAAAATCTTTATAGGATTGTCTATTCCATAGGAATTTCAAAGGATTGTTTTTCCTCCAAATCAAAGGGGCCCTAAAGATTGAAACAAAGGGGGCCTATATATCACATTCTTATAGCCTTTGTGTGTCCGTCATGTTTAGCAAGCCACGCTCAGTCTACTTGCATGTATGTTCTCGTTTGTGAGCAACTTTTACATTCGTACCGTCGGTTGTACATTTGTACGAGACAACAGACAAGCAGGGGTGAAAACGGTATGGAAACGGACGGAAACCATCTTTATCGTTTTCGTTTTCATATTTTTATTCGGAATCGGAATCAGAAACCCCGGATATGAAAACGGAATCGAATATTATCAAAATCGAAAACGGAGCGAAAACGAACCGGCGCGAATACGGTAACGAAAATTTATCGGAAAAAAAAAACCCCTCAAACTGATAAATCCAATTGAATAAATTATCTATGTTTAAAAGAGTAATGTTGTTGATAAATCCCAATGTAGCACAAAAAAATATTCTTATGTAATTTTAGATTTGCATAACAAATATTTTTTTAAAAAAATAACAGCCAAACACCATGGTATTCACTATTTAGTGCTTAAAAAAAGAATCACGGGTATTGTAGTCACAAAATTTCTGGAAATTCCGAGAAAATTTCCGGAAAGTTTCCGACCGATTCCGGGTTCCAACGGAAACTGCCCTTATCATTTCCGATTCCGTTTCCGAGAAAATATTTTCGAATTCGTTTCCGTTTCCGAAAAATTCCGACCGACAGATTCCGTTTTCGAAAATAGATCCGGAATCCAGAAAATTTCCGTACCGTTTTCACCCCTACAGACAAGTATTCGATACGAGCTAAGTTCATTATTTCAGTCACCTTTCTTGTCAACCAAAGCCTAAAGTCCATGTATGCTCATTAAGGTGCAGTGGGTGATGATTAAATAAAAATATGGTACATGTCAATTTGTGTTACAATGTAAACTAGTCCTATATGATCGGCAGCTTTAAGTCTGTAAATTTAGAAACAAAGAGAATACATATATCCAAGGAAAAAGTACGAATTACACCCCTGAACTATAGCGGTCGGCCGAATTACACCCCTGAACCACAAAACCAGACATTTTTCACTCTAAACTTTTAATACCGGACGAATTACCCCCCTCGACTCTGTTTTGAGCGGTTTTGAATTGAGCTTGCACACATGGCGCCAACGTGGCGATCACAGTCAGCAAAAAAATAAAATAAAAATACCTCCCTGGTCCCATTTGTCATACCTCTCTCTTACCCAACGCGCTCTCTCTCCCTGGTCACGCACTCTCTCTCTCTCTCTCTCCCAGGCACACGCTTGGGTAGGCGGCTGCGAGGGGCGGAGGCAGACCAGGCGGTCAGCGGCGGAGGTGGAGCTCGCCCGGGCGGCGGGTGGCTGAGGCAGAGCTCGCCGGGGCGGCCCGTGGTGGAGGCAGAGGCAGATCGGGCGGCCGGCGATAGCACAGAGCGGCGGCGGGCGCTGCTGGGTGGATCCGGCCGGCGGTAGACGTGGGCGGGAGGGGGAACCGGTTGGCGGCGGGAGGGTGGTGGAGGTGAGCGTGCTCAGGTCGTAAGCCGCCGACCCGCTCGTGGCGTTGCCGGTGCCCGACCGCTCGCTGCTTGCCGACTCCTCCAT
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| CDS seq | ATGGAGGAGTCGGCAAGCAGCGAGCGGTCGGGCACCGGCAACGCCACGAGCGGGTCGGCGGCTTACGACCTGAGCACGCTCACCTCCACCACCCTCCCGCCGCCAACCGGTTCCCCCTCCCGCCCACGTCTACCGCCGGCCGGATCCACCCAGCAGCGCCCGCCGCCGCTCTGTGCTATCGCCGGCCGCCCGATCTGCCTCTGCCTCCACCACGGGCCGCCCCGGCGAGCTCTGCCTCAGCCACCCGCCGCCCGGGCGAGCTCCACCTCCGCCGCTGACCGCCTGGTCTGCCTCCGCCCCTCGCAGCCGCCTACCCAAGCACGCATCCTGGACAAAATTACCCTTGGGCTCTACTTCCTTCCTTCATCGCCGTTCTTGCCGACGGCTATTACGCGCCATATCTATGGCTTCCTGGCTGTCACCGACATGCACTCGTCGGTTCTTGGCGTCGCCACTCGCAGCGCCGGCGCCCGGCGGCGACGCACGCCACCTGTTCGACGGAGTGCCCGACCGGCAAGGAAGAGCCCGCGCGCCATGGCGAGCGGTGAGGACCGCATCAGCGCCCTCCCGGAGGACCTCCTCCACCAAGTCCTCTCCCTCCTGCCGTCGCGGGACGCGGTGCGGACCTGCGTGCTTGCCAGGCGCTGGCGCGACCTCTGGAGGTCCGTGCCCGCCGTCCGCGTCGTCGGCCCCAGGGGGTGGGCGACCGCCGACGCGTTCGCCCGCTTCGTCGACCGCCTGCTCCGCCTCCGCCGCGGCGGCGCGCCGCTGGACACCTGCGTTTTCGATCTCGATCTCGACGAGCCCTCCCCCGGCGAAGAGCGGCGTGGCAACCGCTGGATCCGCAGCGCTCTCCGCCACCATGCCAGGGTGCTCCGGTTCATAATCTTCGTCAACTCCCGGAATTCCTTCCAGATCTTCGACGAACACCTCGTCTCCCAAAACCTCACTTTCTTGGAGCTTCAGGGTGTCCGGGCTAGCAACCGGGTTCTTGATTTCACGAGCTGTCCGGCATTGTTGGATCTCAAGATGCACGGTTGCCAGATGGATGCTTTGGAGATGTGCTCCCCATCCGTGAAGCATCTGATCATCATGTTCTGTTCATTCTTTACCAACCACAGGTTTTGGATCTCTTTCCCTAGCCTCGTCTCATTCTTCTTCGATAAAAATTCGGGGAGGGCTCCTCGGCTTGACGGCATGCCGTCATTGGCGACTGCAACAGTTAGGCTTGGTTATGGTTGTGATGATCAATGTTTAAATGGTTTCTACAACGATTGCGAAGATGATGAATGTATGGCTTGTCGCGACTACGATGGGCATGATGAATGCGTGTTTCTTAAGGGCTTGACCGAAGCTACGGAATTGAAGTTGTTAGCTTTCCCTAAAGTGTATCTTTTCAACAGGGATTTAGAATTGTGCCCTCCATTTAGCAAGTTAAAGACTTTGGTGCTCAAATCATGGTTTGTGCCTCCTGACCTCAGTGCATTAACTTGGTTTCTCCAACACGCACCACTTCTTGAAAAGCTTACGCTTAATCTTTCAAAGGTACCCAACAATTTAGGGGTAATGGATGACAGTTACAAACCATGGGAACAATCATTTGCAGCTAGTCATCTTCAAAAAGTTGAAATCGAGTGCAAAAATGTTGATGGAATTGTTCTAAAAATTTTGAAGATCTTGAATGCCAATGGCGTACCACTGGAGAATATTAGTATTCAATGTTCTGACTGTGAGTTATCTATAAACACCCATGCTTCCTATTACTCAGTTACAAAGCCAGTTAGCACTATCCATAGTCAAATGTTGTAA
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| Protein seq | MEESASSERSGTGNATSGSAAYDLSTLTSTTLPPPTGSPSRPRLPPAGSTQQRPPPLCAIAGRPICLCLHHGPPRRALPQPPAARASSTSAADRLVCLRPSQPPTQARILDKITLGLYFLPSSPFLPTAITRHIYGFLAVTDMHSSVLGVATRSAGARRRRTPPVRRSARPARKSPRAMASGEDRISALPEDLLHQVLSLLPSRDAVRTCVLARRWRDLWRSVPAVRVVGPRGWATADAFARFVDRLLRLRRGGAPLDTCVFDLDLDEPSPGEERRGNRWIRSALRHHARVLRFIIFVNSRNSFQIFDEHLVSQNLTFLELQGVRASNRVLDFTSCPALLDLKMHGCQMDALEMCSPSVKHLIIMFCSFFTNHRFWISFPSLVSFFFDKNSGRAPRLDGMPSLATATVRLGYGCDDQCLNGFYNDCEDDECMACRDYDGHDECVFLKGLTEATELKLLAFPKVYLFNRDLELCPPFSKLKTLVLKSWFVPPDLSALTWFLQHAPLLEKLTLNLSKVPNNLGVMDDSYKPWEQSFAASHLQKVEIECKNVDGIVLKILKILNANGVPLENISIQCSDCELSINTHASYYSVTKPVSTIHSQML |
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| Function | Putative F-box/FBD/LRR-repeat protein At1g78760 [UniProtKB/Swiss-Prot:Q9ZV94] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_11G0090000 | OsZS97_11T0090000-mRNA-1 | Chr11 | 5605406 | 5610032 | - | makerRMon | ||
| CDS seq | ATGGAGGAGTCGGCAAGCAGCGAGCGGTCGGGCACCGGCAACGCCACGAGCGGGTCGGCGGCTTACGACCTGAGCACGCTCACCTCCACCACCCTCCCGCCGCCAACCGGTTCCCCCTCCCGCCCACGTCTACCGCCGGCCGGATCCACCCAGCAGCGCCCGCCGCCGCTCTGTGCTATCGCCGGCCGCCCGATCTGCCTCTGCCTCCACCACGGGCCGCCCCGGCGAGCTCTGCCTCAGCCACCCGCCGCCCGGGCGAGCTCCACCTCCGCCGCTGACCGCCTGGTCTGCCTCCGCCCCTCGCAGCCGCCTACCCAAGCACGCATCCTGGACAAAATTACCCTTGGGCTCTACTTCCTTCCTTCATCGCCGTTCTTGCCGACGGCTATTACGCGCCATATCTATGGCTTCCTGGCTGTCACCGACATGCACTCGTCGGTTCTTGGCGTCGCCACTCGCAGCGCCGGCGCCCGGCGGCGACGCACGCCACCTGTTCGACGGAGTGCCCGACCGGCAAGGAAGAGCCCGCGCGCCATGGCGAGCGGTGAGGACCGCATCAGCGCCCTCCCGGAGGACCTCCTCCACCAAGTCCTCTCCCTCCTGCCGTCGCGGGACGCGGTGCGGACCTGCGTGCTTGCCAGGCGCTGGCGCGACCTCTGGAGGTCCGTGCCCGCCGTCCGCGTCGTCGGCCCCAGGGGGTGGGCGACCGCCGACGCGTTCGCCCGCTTCGTCGACCGCCTGCTCCGCCTCCGCCGCGGCGGCGCGCCGCTGGACACCTGCGTTTTCGATCTCGATCTCGACGAGCCCTCCCCCGGCGAAGAGCGGCGTGGCAACCGCTGGATCCGCAGCGCTCTCCGCCACCATGCCAGGGTGCTCCGGTTCATAATCTTCGTCAACTCCCGGAATTCCTTCCAGATCTTCGACGAACACCTCGTCTCCCAAAACCTCACTTTCTTGGAGCTTCAGGGTGTCCGGGCTAGCAACCGGGTTCTTGATTTCACGAGCTGTCCGGCATTGTTGGATCTCAAGATGCACGGTTGCCAGATGGATGCTTTGGAGATGTGCTCCCCATCCGTGAAGCATCTGATCATCATGTTCTGTTCATTCTTTACCAACCACAGGTTTTGGATCTCTTTCCCTAGCCTCGTCTCATTCTTCTTCGATAAAAATTCGGGGAGGGCTCCTCGGCTTGACGGCATGCCGTCATTGGCGACTGCAACAGTTAGGCTTGGTTATGGTTGTGATGATCAATGTTTAAATGGTTTCTACAACGATTGCGAAGATGATGAATGTATGGCTTGTCGCGACTACGATGGGCATGATGAATGCGTGTTTCTTAAGGGCTTGACCGAAGCTACGGAATTGAAGTTGTTAGCTTTCCCTAAAGTGTATCTTTTCAACAGGGATTTAGAATTGTGCCCTCCATTTAGCAAGTTAAAGACTTTGGTGCTCAAATCATGGTTTGTGCCTCCTGACCTCAGTGCATTAACTTGGTTTCTCCAACACGCACCACTTCTTGAAAAGCTTACGCTTAATCTTTCAAAGGTACCCAACAATTTAGGGGTAATGGATGACAGTTACAAACCATGGGAACAATCATTTGCAGCTAGTCATCTTCAAAAAGTTGAAATCGAGTGCAAAAATGTTGATGGAATTGTTCTAAAAATTTTGAAGATCTTGAATGCCAATGGCGTACCACTGGAGAATATTAGTATTCAATGTTCTGACTGTGAGTTATCTATAAACACCCATGCTTCCTATTACTCAGTTACAAAGCCAGTTAGCACTATCCATAGTCAAATGTTGTAA
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| Protein seq | MEESASSERSGTGNATSGSAAYDLSTLTSTTLPPPTGSPSRPRLPPAGSTQQRPPPLCAIAGRPICLCLHHGPPRRALPQPPAARASSTSAADRLVCLRPSQPPTQARILDKITLGLYFLPSSPFLPTAITRHIYGFLAVTDMHSSVLGVATRSAGARRRRTPPVRRSARPARKSPRAMASGEDRISALPEDLLHQVLSLLPSRDAVRTCVLARRWRDLWRSVPAVRVVGPRGWATADAFARFVDRLLRLRRGGAPLDTCVFDLDLDEPSPGEERRGNRWIRSALRHHARVLRFIIFVNSRNSFQIFDEHLVSQNLTFLELQGVRASNRVLDFTSCPALLDLKMHGCQMDALEMCSPSVKHLIIMFCSFFTNHRFWISFPSLVSFFFDKNSGRAPRLDGMPSLATATVRLGYGCDDQCLNGFYNDCEDDECMACRDYDGHDECVFLKGLTEATELKLLAFPKVYLFNRDLELCPPFSKLKTLVLKSWFVPPDLSALTWFLQHAPLLEKLTLNLSKVPNNLGVMDDSYKPWEQSFAASHLQKVEIECKNVDGIVLKILKILNANGVPLENISIQCSDCELSINTHASYYSVTKPVSTIHSQML
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.631709 | 1.7908555 | 9.0321715 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0207800 | RBH | 0.0 | 0.0 | 0.820229 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10160 | RBH | 0.0 | 0.0 | 0.257298 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0207800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0006840 | SBH | 0.000000 | 0.0 | 2.165890 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0006760 | RBH | 0.0 | 0.599578 | 0.945592 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006740 | RBH | 0.384717 | 2.070070 | 1.225451 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0006680 | RBH | 0.000000 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0006640 | RBH | 2.219562 | 6.947505 | 8.327724 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0088700 | RBH | 1.6142705 | 2.7966575 | 4.5590235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0006660 | RBH | 0.069608 | 0.115394 | 0.221663 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0090300 | SBH | 2.1194415 | 3.740084 | 6.3715615 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0006620 | RBH | 0.0 | 0.116589 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0006720 | RBH | 0.131223 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0006700 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0006760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0006770 | RBH | 0.214076 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G006730 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006560 | RBH | 0.0 | 0.0 | 0.0 |
