Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0351500 | OGI:10061320 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:22436302-22440211 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCCTCTAATCCTTCTTTTCTCTAAAAATAAATAAAGTAGACAAAGAGCATCACACTTATTTAGAAAGAATGCTGGTATAAGAATAGCAAGAATGTAACATATAATATGTCGCGAGTATACACTGTAAAACTTCGGTAACAACAGTTTGGGAAAGGAAGAAAAAAAAAACTCAGGTAATACATAATGGACAGTTTAGGTAATTAGAAAAAACAAAACAAAACATATAAAAGAAGGAGAGAAAAGAGAAAAAAAAAAAGAGAAATGGGAAAAATTCCGGCATACACCAGCACCAGCTCTCTTGCTTTTTCACTGCCACTTCACTTGATGAGCACATCTTTAATTTTTCACCTTCGATTTTTTTTTCACCGCGCCCTTGCAACATGCCACAGTAGATCGAGCAGTAGTACACATAGCCAAACAAATTTTTACCGAGGTGTAATAATTTGTAACAACCACAACCACCGCAACATTTTGCATATATACCCTTGTCTTCCTTTTTTTTTTAACCGCGAGAGCGAGGTGTTATTACCGCTCCTCTGTGCCGTTTTTCACCGCACCAAGTTTTAAACCCTCTCCGTGAACCCTCACGAATGGAGGGTCCTTATTAAATTTACCACAACAAATCAATAAATTACCACGCCACCAATTCCTTTTTTTTTTGCTTTTAACACTAGCTAAGAGGAGACGCGAGATGGGAGAGACCACTGTAATTAACACAAGAACGAATCAAGAAATGGATCGATGCTACTAGCTTTTTCTTGCTAGGAACATCCAGCGACGAACGATCGATGGGCATGCATGCAGCTTGAAATGGGCGAATTTTTCTTTCTTGGCATGGAGATGTATAGCTGCTAGCTTGCATGAGGAATCAATGGAGAAATATGCCGGAGGAGGAAGAGAATTCTTGAGGTTTTAGGTTTTTGAGCTTTTTGATGGTGTTGAGATATGGACGAGCCATGGAGGAGGCGACAGGTAGGTAGATACAAATGGTACAAGAGATGGAGGAGGAAGAAGAAGAAGAAGCCATTGACGCGCATGGAGGTATGCATGTGTAGGAAGGAGAGAGAGTCACCGGATGGATGGATGGATCACTGGACCATTGCCAAGAAAGATCCGGTGGTCGTCGTTGCGGCCGCCGCCGTGGCGGGGGCGGCGGTGCCGGGCGGGTTGCCGCCGGCGGCCGCGGAGGCGGCGGCGTTCGGTCTGACGACGCTCTGCTGGTGGCGGTGCTGCGGCGGCTGCTGGTGGTGGTGCTGATGCTGGAACTGGATCTCGTACTGCATCTTGTTGCCGTCGACGTCGTCGTCGTCGTCGTCGTCATCGTCGTCGTAGTCATCCTCGTCGTCCTCGTCCATGTTGTCGCTGTCCACGCCGCCGCCGCCACCGCCGCCGTCCGTTCGGTTGAAGGCGTTGTTCGCCGCCGCCGGCTGCTGCGGCCTCTGCTCCATCATCTCCTTCATAATGTCCTCTGGCTTTAAATGCGCAGCGTTACGCAATCAGCATTGGATCACCAAAAACGAACAGCAGCGTACCACATGTGTACGCGCCAATTCGCTACGGCCACACGGGGAAATGCACACGGATGGATGCACGTAGCTTAGCTTACCTTCTTCGCCGCCGCGCCGGTGAAGAACTTGTTGCCGGCGACGACGCTGCCGTTGCTCGCCTGCATTTGCATGCCCCCGGAGCCGCCTCCTCCTCCTTCGCCGTTCGCGCCGTTTGTACTGCTGGTGCCGTTGCCGTTCTTGGTCGTCGTCACGGGCTGTGGCGGCGGCGGCGGCGGTGTCTGCGAGATCGGCGCGGCGACTGTCACCGCCGGCTCCGCGTGCTCCGGCGGCGGGAGGGCCGGTGCGGCGGCGGCGGCGGCGGAGGAGGAGGAGTTGAGAGCCGCCTTGTTGCGGTAGAGGGCGTCGAGCTGGTGGAAGTAGGGGCAGGTCTTGGAGTCCTCGGGGCGCTTCTTGTTGCTCTCCTTGACCTTCTTGAAGTACTTGTTGATGTTCTCCCACTTCTCCTTGCACCTCTTGGAGCTCCGGCTGTAGCCCAGCCGCCGCATGCCGGCGGAGATCTCCTCCCACAGCGGGCCCTTCGGCCCGGCCTCCTGGTACCGGTTGTCCAGGTTGCTCCGCAGCTGGATCAGCGCGTGCACCTCCGCCTTGGGCCACCGCGACGACGACGGCTGCCCCCCGCCGCCGCCGGACCCGTCGTACCCCGCGTCGTGCGCCTCGGCGGCCGTCATGACAATGTCCATGCTGCTTTGCGTCTGCGGCGTCGCCGGCAATGGCGACTTGGTGGCCTGCGGCGATGGCTGGGATGCTGCTGCTGCTGCTGCTGCTGGTGGCGGCGGCGGCGGAGCTGGCGCGACGGAGGTGATGGGGGTGGGGTGAGACGGCGGTGGCGGCGGCTGAGGCGGCTGGGATGGCGCCGGTGGGGGCATGACGGTGATGGCGGGGGCGGCGATGATGGGCGGCATTGGGATGGTCTGCCCGGTGATCTTCTGTATGAAGGACACGACGGCGGCGTCGCGCGACGCCGCCATGGCGCGCTCCTGCGCGAGGATCTCCTGCTCGCGGGCGAGGCGCGCCATCTCCTGCCGCCGCCACGCCTCCTCGCGGATCATCCGGTCCTGCTCCCGCTTCTCGATGGCCTCCAGAAACCGCTGCTGCATCGCCTCCTGCCGCTCCATCACCTGCTTCACCAACCCCTCGAAGAACCTCATCATCTTCCCGCTCCCTCCTCCTCCTCCGCCGCCGCCACCGCCGCCCGCGGCGGCGCCACCCTCCGACAACCTCTTCCTCTTCCCCCTCTCATCACCGCCGCCGCCGCCCATGTCCTCGGTCCCCTCGTCGTCGGAGTCCTCCTCGTCGGAATACTCCTCCGTGTTCGACGTCGAGAAGCTCATCACGTTCCCCATCACCACCGCGGGCGGCGGCTCGGCGGGGGCGCGCACCCCGCCGGACACCCCCACAGCCGTCGCCGGCGGCGGGGCCAGCGACGTCACCGGCGATGGCGCCGCCACGACGCCGGCGGCGGTGCCGTGCAGCGCCTCGAGCTGCGTGAAGAAGCGGTACGTCTTGCCGTCGTTGCGCCCCGCGCGGCTCTCCTTGGTGCGCTTGTAATACTTGTGCACGTTCTCGAACTTCTCCTTGCACTTCTTCGCGCTCCTCCGGTAACCCTCCTCCGCCAGCTTCCTGCACCCAACCCACCACCACGCCGCCATTAACAACAACACGAAGAAGAAGAAGCTTAAGCTCGAGCTCGTCAATGGCGAGCCAAAATTTGAAGGAAATTAAGCTGTAACCCTCACAGGAAAGTTGCATGCATGGAGTAGAATTTTACTCGATTTGGGCACCCATCGGAAAAGATAAAGAAAGGAAGGTGTGTGCATACATGCAGCAATAGCTAGCTAAACTAGGATGAATCAAATCCCAAGAAGAGACTAGAGAGAATGCTGCAGGGGGGGAGTAAAAACTCCATCTTTTTTTCTTCTCCTGTGCTTGTGCAAAAGAATGCATTTTTATGGCCAATTCTGCTTGCAAAATTGGAATTGATGCCTTTCGGATCTGAAGCGTATGGGCGTGTGTTGTATTGTACCACCATCTTGATAAGAGATGGCCATGAAAAAAAAATTCTTTGGAAAGGTGAGGAAGGAGAGTGATACCCGTATTATTTTAAAATGGAAAAAAAAAGTCACTGTGCTCGTGAACGATGGTTAAGGGGAAAAAAGTGAAAAGGAGGTGTTTATTTTAGCCGGTAATTAATTAACTGAGCCTAACCAAAAATCACACCAGGCTACTGCTTCTGGAGGCCGCCGAGATTTCATGCAGCATTTCGCCGACGAGAATTCAGCCATGGCGGCGAGATCGACGGCGGAGCAATTCTTGAGGGGGGCTCATGGCGTTGAATTTTTTAC
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| CDS seq | ATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCGGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGCCGGCGACGGCTGTGGGGGTGTCCGGCGGGGTGCGCGCCCCCGCCGAGCCGCCGCCCGCGGTGGTGATGGGGAACGTGATGAGCTTCTCGACGTCGAACACGGAGGAGTATTCCGACGAGGAGGACTCCGACGACGAGGGGACCGAGGACATGGGCGGCGGCGGCGGTGATGAGAGGGGGAAGAGGAAGAGGTTGTCGGAGGGTGGCGCCGCCGCGGGCGGCGGTGGCGGCGGCGGAGGAGGAGGAGGGAGCGGGAAGATGATGAGGTTCTTCGAGGGGTTGGTGAAGCAGGTGATGGAGCGGCAGGAGGCGATGCAGCAGCGGTTTCTGGAGGCCATCGAGAAGCGGGAGCAGGACCGGATGATCCGCGAGGAGGCGTGGCGGCGGCAGGAGATGGCGCGCCTCGCCCGCGAGCAGGAGATCCTCGCGCAGGAGCGCGCCATGGCGGCGTCGCGCGACGCCGCCGTCGTGTCCTTCATACAGAAGATCACCGGGCAGACCATCCCAATGCCGCCCATCATCGCCGCCCCCGCCATCACCGTCATGCCCCCACCGGCGCCATCCCAGCCGCCTCAGCCGCCGCCACCGCCGTCTCACCCCACCCCCATCACCTCCGTCGCGCCAGCTCCGCCGCCGCCGCCACCAGCAGCAGCAGCAGCAGCAGCATCCCAGCCATCGCCGCAGGCCACCAAGTCGCCATTGCCGGCGACGCCGCAGACGCAAAGCAGCATGGACATTGTCATGACGGCCGCCGAGGCGCACGACGCGGGGTACGACGGGTCCGGCGGCGGCGGGGGGCAGCCGTCGTCGTCGCGGTGGCCCAAGGCGGAGGTGCACGCGCTGATCCAGCTGCGGAGCAACCTGGACAACCGGTACCAGGAGGCCGGGCCGAAGGGCCCGCTGTGGGAGGAGATCTCCGCCGGCATGCGGCGGCTGGGCTACAGCCGGAGCTCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAGAGCAACAAGAAGCGCCCCGAGGACTCCAAGACCTGCCCCTACTTCCACCAGCTCGACGCCCTCTACCGCAACAAGGCGGCTCTCAACTCCTCCTCCTCCGCCGCCGCCGCCGCCGCACCGGCCCTCCCGCCGCCGGAGCACGCGGAGCCGGCGGTGACAGTCGCCGCGCCGATCTCGCAGACACCGCCGCCGCCGCCGCCACAGCCCGTGACGACGACCAAGAACGGCAACGGCACCAGCAGTACAAACGGCGCGAACGGCGAAGGAGGAGGAGGCGGCTCCGGGGGCATGCAAATGCAGGCGAGCAACGGCAGCGTCGTCGCCGGCAACAAGTTCTTCACCGGCGCGGCGGCGAAGAAGCCAGAGGACATTATGAAGGAGATGATGGAGCAGAGGCCGCAGCAGCCGGCGGCGGCGAACAACGCCTTCAACCGAACGGACGGCGGCGGTGGCGGCGGCGGCGTGGACAGCGACAACATGGACGAGGACGACGAGGATGACTACGACGACGATGACGACGACGACGACGACGACGTCGACGGCAACAAGATGCAGTACGAGATCCAGTTCCAGCATCAGCACCACCACCAGCAGCCGCCGCAGCACCGCCACCAGCAGAGCGTCGTCAGACCGAACGCCGCCGCCTCCGCGGCCGCCGGCGGCAACCCGCCCGGCACCGCCGCCCCCGCCACGGCGGCGGCCGCAACGACGACCACCGGATCTTTCTTGGCAATGGTCCAGTGA
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| Protein seq | MHATFLKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGRNDGKTYRFFTQLEALHGTAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTSNTEEYSDEEDSDDEGTEDMGGGGGDERGKRKRLSEGGAAAGGGGGGGGGGGSGKMMRFFEGLVKQVMERQEAMQQRFLEAIEKREQDRMIREEAWRRQEMARLAREQEILAQERAMAASRDAAVVSFIQKITGQTIPMPPIIAAPAITVMPPPAPSQPPQPPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPATPQTQSSMDIVMTAAEAHDAGYDGSGGGGGQPSSSRWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRNKAALNSSSSAAAAAAPALPPPEHAEPAVTVAAPISQTPPPPPPQPVTTTKNGNGTSSTNGANGEGGGGGSGGMQMQASNGSVVAGNKFFTGAAAKKPEDIMKEMMEQRPQQPAAANNAFNRTDGGGGGGGVDSDNMDEDDEDDYDDDDDDDDDDVDGNKMQYEIQFQHQHHHQQPPQHRHQQSVVRPNAAASAAAGGNPPGTAAPATAAAATTTTGSFLAMVQ |
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| Function | Trihelix transcription factor DF1 [UniProtKB/Swiss-Prot:Q9C6K3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0351500 | OsZS97_10T0351500.1 | Chr10 | 22436302 | 22440211 | - | makerRMon | ||
| CDS seq | ATGCATGCAACTTTCCTGAAGCTGGCGGAGGAGGGTTACCGGAGGAGCGCGAAGAAGTGCAAGGAGAAGTTCGAGAACGTGCACAAGTATTACAAGCGCACCAAGGAGAGCCGCGCGGGGCGCAACGACGGCAAGACGTACCGCTTCTTCACGCAGCTCGAGGCGCTGCACGGCACCGCCGCCGGCGTCGTGGCGGCGCCATCGCCGGTGACGTCGCTGGCCCCGCCGCCGGCGACGGCTGTGGGGGTGTCCGGCGGGGTGCGCGCCCCCGCCGAGCCGCCGCCCGCGGTGGTGATGGGGAACGTGATGAGCTTCTCGACGTCGAACACGGAGGAGTATTCCGACGAGGAGGACTCCGACGACGAGGGGACCGAGGACATGGGCGGCGGCGGCGGTGATGAGAGGGGGAAGAGGAAGAGGTTGTCGGAGGGTGGCGCCGCCGCGGGCGGCGGTGGCGGCGGCGGAGGAGGAGGAGGGAGCGGGAAGATGATGAGGTTCTTCGAGGGGTTGGTGAAGCAGGTGATGGAGCGGCAGGAGGCGATGCAGCAGCGGTTTCTGGAGGCCATCGAGAAGCGGGAGCAGGACCGGATGATCCGCGAGGAGGCGTGGCGGCGGCAGGAGATGGCGCGCCTCGCCCGCGAGCAGGAGATCCTCGCGCAGGAGCGCGCCATGGCGGCGTCGCGCGACGCCGCCGTCGTGTCCTTCATACAGAAGATCACCGGGCAGACCATCCCAATGCCGCCCATCATCGCCGCCCCCGCCATCACCGTCATGCCCCCACCGGCGCCATCCCAGCCGCCTCAGCCGCCGCCACCGCCGTCTCACCCCACCCCCATCACCTCCGTCGCGCCAGCTCCGCCGCCGCCGCCACCAGCAGCAGCAGCAGCAGCAGCATCCCAGCCATCGCCGCAGGCCACCAAGTCGCCATTGCCGGCGACGCCGCAGACGCAAAGCAGCATGGACATTGTCATGACGGCCGCCGAGGCGCACGACGCGGGGTACGACGGGTCCGGCGGCGGCGGGGGGCAGCCGTCGTCGTCGCGGTGGCCCAAGGCGGAGGTGCACGCGCTGATCCAGCTGCGGAGCAACCTGGACAACCGGTACCAGGAGGCCGGGCCGAAGGGCCCGCTGTGGGAGGAGATCTCCGCCGGCATGCGGCGGCTGGGCTACAGCCGGAGCTCCAAGAGGTGCAAGGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTCAAGGAGAGCAACAAGAAGCGCCCCGAGGACTCCAAGACCTGCCCCTACTTCCACCAGCTCGACGCCCTCTACCGCAACAAGGCGGCTCTCAACTCCTCCTCCTCCGCCGCCGCCGCCGCCGCACCGGCCCTCCCGCCGCCGGAGCACGCGGAGCCGGCGGTGACAGTCGCCGCGCCGATCTCGCAGACACCGCCGCCGCCGCCGCCACAGCCCGTGACGACGACCAAGAACGGCAACGGCACCAGCAGTACAAACGGCGCGAACGGCGAAGGAGGAGGAGGCGGCTCCGGGGGCATGCAAATGCAGGCGAGCAACGGCAGCGTCGTCGCCGGCAACAAGTTCTTCACCGGCGCGGCGGCGAAGAAGCCAGAGGACATTATGAAGGAGATGATGGAGCAGAGGCCGCAGCAGCCGGCGGCGGCGAACAACGCCTTCAACCGAACGGACGGCGGCGGTGGCGGCGGCGGCGTGGACAGCGACAACATGGACGAGGACGACGAGGATGACTACGACGACGATGACGACGACGACGACGACGACGTCGACGGCAACAAGATGCAGTACGAGATCCAGTTCCAGCATCAGCACCACCACCAGCAGCCGCCGCAGCACCGCCACCAGCAGAGCGTCGTCAGACCGAACGCCGCCGCCTCCGCGGCCGCCGGCGGCAACCCGCCCGGCACCGCCGCCCCCGCCACGGCGGCGGCCGCAACGACGACCACCGGATCTTTCTTGGCAATGGTCCAGTGA
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| Protein seq | MHATFLKLAEEGYRRSAKKCKEKFENVHKYYKRTKESRAGRNDGKTYRFFTQLEALHGTAAGVVAAPSPVTSLAPPPATAVGVSGGVRAPAEPPPAVVMGNVMSFSTSNTEEYSDEEDSDDEGTEDMGGGGGDERGKRKRLSEGGAAAGGGGGGGGGGGSGKMMRFFEGLVKQVMERQEAMQQRFLEAIEKREQDRMIREEAWRRQEMARLAREQEILAQERAMAASRDAAVVSFIQKITGQTIPMPPIIAAPAITVMPPPAPSQPPQPPPPPSHPTPITSVAPAPPPPPPAAAAAAASQPSPQATKSPLPATPQTQSSMDIVMTAAEAHDAGYDGSGGGGGQPSSSRWPKAEVHALIQLRSNLDNRYQEAGPKGPLWEEISAGMRRLGYSRSSKRCKEKWENINKYFKKVKESNKKRPEDSKTCPYFHQLDALYRNKAALNSSSSAAAAAAPALPPPEHAEPAVTVAAPISQTPPPPPPQPVTTTKNGNGTSSTNGANGEGGGGGSGGMQMQASNGSVVAGNKFFTGAAAKKPEDIMKEMMEQRPQQPAAANNAFNRTDGGGGGGGVDSDNMDEDDEDDYDDDDDDDDDDVDGNKMQYEIQFQHQHHHQQPPQHRHQQSVVRPNAAASAAAGGNPPGTAAPATAAAATTTTGSFLAMVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 14.8917665 | 15.431762 | 7.4523125 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0516500 | RBH | 1.751963 | 1.755756 | 14.378802 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g37240 | RBH | 0.946669 | 1.008622 | 3.631739 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0516500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0017200 | RBH | 0.262037 | 15.324864 | 13.042350 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0017480 | RBH | 0.333429 | 8.426486 | 3.665275 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0016970 | RBH | 1.274452 | 22.030233 | 20.818060 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0017430 | RBH | 0.210915 | 1.231754 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0017190 | RBH | 7.016382 | 59.954315 | 27.903782 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0328200 | RBH | 9.0417825 | 22.111043 | 4.724912 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0017090 | RBH | 0.123508 | 2.215935 | 2.076726 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0011500 | RBH | 13.8215705 | 0.5307415 | 5.5328465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0016880 | RBH | 0.127673 | 0.676502 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0016720 | RBH | 0.434454 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0017310 | RBH | 7.226509 | 66.830742 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0016930 | RBH | 1.054652 | 0.0 | 1.904904 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0017380 | RBH | 0.466934 | 28.239201 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G017000 | RBH | 0.285210 | 14.878197 | 8.609421 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0017220 | RBH | 1.104077 | 18.911879 | 26.975529 |
