Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0285800 | OGI:10051040 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:18211910-18213120 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAAGCCACATTCCGAGAATCCAAAATATTTAGTTCACTCCTCAACTCACAAAACCTAGCTTCATCTAGAGGCTTGGTAAAGATATCCGCCAATTGTTTGTCGGTTCTCACATGTTGGATGTCTATGTCGCCTCTTGTGGAATGATCTCTCAAGAAATGGTGGCGAATATCAATATGTTTGGTTTGAGAGTGTTGGACGGGGTTGTTGGCTATCTTAATGGCGCTCTCATTGTCACATAGGAGTGGGATTTTGGATTCATTGAGGCCATAGTCTCTCAAGGTTTGCTTCATCCAAAGAAGTTGAGCACAACAACTCCCCGCCGAAACATATTCCGCTTCGGCGGTGGATAGGGCGACGGAGTTTTGCTTCTTGGAAGACTAAGAAACAAGGGACCTACCCAAGAATTGGCAAGTACCCGATGTGCTTTTCCTATCCACTTTGCACCCGGCATAATCCGCATCGGCATAGCCAATGAGATCAAACCTCGCTCCCTTAGGATACCAAAGACCAAGGTTATGAGTGTGCACTAAATATCTAAGAATTCTCTTCACGGTCACAAGGTGACACTCCTTCGGAGCGGCTTGAAATCTTGCACACATGCACACACTAAGCATAATATCGAGCCTAGATGCACAAAGGTAAAGGAGTGAGCCAATGATGGAACGATATACCTTTTGATCGACGCCTTTACCTTGCTCGTTGAGGTCGAGGTGACCATTTGATGGCATGGGAGTGTGGATTGGCTTGGCGTTCTCCATTCCAAACTTCTTGAGCATGTCCTTCAAATACTTTGTTTGGCAAATGAAGGTTCCTTCCTTGAGTTGCGCTATTTGAAGGCCGAGGAAGAACTTCAATTCACCCATCATGGACATCTCAAAACGTTTGGTCATTATCCTACTAAACTCTTCACTAAAAGACTTGTTAGTAGAACCAAATATAATGTCATCGACATATATTTGGCACACAAAAATATCATTATCATGTCTTTTAGTAAAAAGAGTTGAATCGGCTTTCCCGATTTCAAAGCCTTTTTCACAAGAAAATTGCGAAGACACTCATACCAAGCTCTAGGGGCTTGCTTAAGCCCGTAGAGTGCCTTGTGGAGCTTGTACACGTGGTTGGGATACTTTGGATCCTCGAAGCCCGGTGGTTGCTCCACGTATACCAACTCGTTGATAGGCCCGTTGAGGAAGGCGCTTTTGACATCCAT
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| CDS seq | ATGGATGTCAAAAGCGCCTTCCTCAACGGGCCTATCAACGAGTTGGTATACGTGGAGCAACCACCGGGCTTCGAGGATCCAAAGTATCCCAACCACGTGTACAAGCTCCACAAGGCACTCTACGGGCTTAAGCAAGCCCCTAGAGCTTGTGAAGAGTTTAGTAGGATAATGACCAAACGTTTTGAGATGTCCATGATGGGTGAATTGAAGTTCTTCCTCGGCCTTCAAATAGCGCAACTCAAGGAAGGAACCTTCATTTGCCAAACAAAGTATTTGAAGGACATGCTCAAGAAGTTTGGAATGGAGAACGCCAAGCCAATCCACACTCCCATGCCATCAAATGGTCACCTCGACCTCAACGAGCAAGGTAAAGGCGTCGATCAAAAGTCTTCCAAGAAGCAAAACTCCGTCGCCCTATCCACCGCCGAAGCGGAATATGTTTCGGCGGGGAGTTGTTGTGCTCAACTTCTTTGGATGAAGCAAACCTTGAGAGACTATGGCCTCAATGAATCCAAAATCCCACTCCTATGTGACAATGAGAGCGCCATTAAGATAGCCAACAACCCCGTCCAACACTCTCAAACCAAACATATTGATATTCGCCACCATTTCTTGAGAGATCATTCCACAAGAGGCGACATAGACATCCAACATGTGAGAACCGACAAACAATTGGCGGATATCTTTACCAAGCCTCTAGATGAAGCTAGGTTTTGTGAGTTGAGGAGTGAACTAAATATTTTGGATTCTCGGAATGTGGCTTGA
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| Protein seq | MDVKSAFLNGPINELVYVEQPPGFEDPKYPNHVYKLHKALYGLKQAPRACEEFSRIMTKRFEMSMMGELKFFLGLQIAQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKGVDQKSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLRDYGLNESKIPLLCDNESAIKIANNPVQHSQTKHIDIRHHFLRDHSTRGDIDIQHVRTDKQLADIFTKPLDEARFCELRSELNILDSRNVA |
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| Function | Copia protein [UniProtKB/Swiss-Prot:P04146] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0285800 | OsZS97_10T0285800.1 | Chr10 | 18211910 | 18213120 | - | makerRMon | ||
| CDS seq | ATGGATGTCAAAAGCGCCTTCCTCAACGGGCCTATCAACGAGTTGGTATACGTGGAGCAACCACCGGGCTTCGAGGATCCAAAGTATCCCAACCACGTGTACAAGCTCCACAAGGCACTCTACGGGCTTAAGCAAGCCCCTAGAGCTTGTGAAGAGTTTAGTAGGATAATGACCAAACGTTTTGAGATGTCCATGATGGGTGAATTGAAGTTCTTCCTCGGCCTTCAAATAGCGCAACTCAAGGAAGGAACCTTCATTTGCCAAACAAAGTATTTGAAGGACATGCTCAAGAAGTTTGGAATGGAGAACGCCAAGCCAATCCACACTCCCATGCCATCAAATGGTCACCTCGACCTCAACGAGCAAGGTAAAGGCGTCGATCAAAAGTCTTCCAAGAAGCAAAACTCCGTCGCCCTATCCACCGCCGAAGCGGAATATGTTTCGGCGGGGAGTTGTTGTGCTCAACTTCTTTGGATGAAGCAAACCTTGAGAGACTATGGCCTCAATGAATCCAAAATCCCACTCCTATGTGACAATGAGAGCGCCATTAAGATAGCCAACAACCCCGTCCAACACTCTCAAACCAAACATATTGATATTCGCCACCATTTCTTGAGAGATCATTCCACAAGAGGCGACATAGACATCCAACATGTGAGAACCGACAAACAATTGGCGGATATCTTTACCAAGCCTCTAGATGAAGCTAGGTTTTGTGAGTTGAGGAGTGAACTAAATATTTTGGATTCTCGGAATGTGGCTTGA
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| Protein seq | MDVKSAFLNGPINELVYVEQPPGFEDPKYPNHVYKLHKALYGLKQAPRACEEFSRIMTKRFEMSMMGELKFFLGLQIAQLKEGTFICQTKYLKDMLKKFGMENAKPIHTPMPSNGHLDLNEQGKGVDQKSSKKQNSVALSTAEAEYVSAGSCCAQLLWMKQTLRDYGLNESKIPLLCDNESAIKIANNPVQHSQTKHIDIRHHFLRDHSTRGDIDIQHVRTDKQLADIFTKPLDEARFCELRSELNILDSRNVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.058206 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0432200 | SBH | 1.240045 | 1.497546 | 2.642219 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g24910 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0432200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0265800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0518200 | SBH | 0.0039255 | 0.0633565 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
