Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0199000 | OGI:10029130 | 13/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:12744300-12748711 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGGGTCGCTGGGGAGTCCATGCCTCTGGTTGTAGAGGGGGTGATTATGATCCAGGAAAGGTGCACTGTGGTGAGTTGTGTTATGCGAGGGATAATGTCACAATTCCTTTCCGAGATACCGTGGTGGTATTGAGGCACATGGTAACATGATGTGGGGTTGTGTCTTGTGGGTACAGTGGTACACCTCTGATCAGAGTTTAATCTATTCGAATAGCCGTACCCGCGGTTATGGGTGAGTTGAGCAATGTTTTTCGTGATTAGTCGCACACTACTCATTAATGGTAATTGTGGTAACTGATTTAGTTCCTGGTTTGGAATGGTTAATTCCTGGTTTGGAGGGTTAATTTGTTCAGCCGGGGTTGGTTGTTCAAATTGGGTTAGGCCTATGCAACACGGGTGTGTTGTATGGTGTTTGGTTAATATTGATTAAATATTCAACTGTTTTACCATTCTCTGAAATATTTATTAAATGCTGTTTTCTGCAAATGAGCTATACTATGCCATACTTTGTAATCCTGTGCACTTGCATATTTGCTGTGTGGCTTGTTGAGTATGTTATATGCTCATTCTTGCAATATTCATTCATCAGAGGAGGAGTACTTCAGTGAAGGTGATGATCTTGAGGATTGAGCTTATTCTGGTTAAGTTGCCTGTGGAGTGGAGTTGCCGTCGCTGTTCCGTCGTTTGTTTTAGTTTTATCTTTCCGCTGCGTAGAATGTTTTATTTTCTTGAGAGGAACTATCCACCTCTGTAATAATTTTAATTTGCGAATATTCTATAGTTAAATATTTGAACTCTATTATCGATATTGTCATTGTGTGCCTCGGTTGATTCCTGGACGAGGGTTTAACACACATGTAAGCGTTTGGAATTTTGGATAGAAATTCCGGGCGTGACAGTTAGTCATGCCCTTTGGTGTCACTAATGCACCCAGTACTTTCATGAGATTAATGAATGAAGTTTTACATGTTTTCATTGGCAGATTTGTGGTGGTATATTTTGATGACATTCTCATATATAGCAGATCAATAGAGGATCATCATGGTCATTTGCGTGCTATTTTTGATGCTCTACGAGATGCACGTTTATTTGGTAACCTTGAGAAGTGCACATTTTGCACAGATCGAGTCTCTTTTCTTGGCTATGTTGTGACTCCGCAGGGAATTGAAGTAGATCAAGCCAAGGTTGAAGCCATACATAGCTGGCCGGTTCCAACAATGATCACAGAAGTGAGAAGCTTTCTAGGAGTTGCTGGGTTCTACCGCCGCTTTGTGAAGGATTTTAGCACCATTGCAGCCCCACTACATGAGCTTACCAAGAGAAATGTGACATTCACTTGGGCTCTGATCATGAACCTTTGAAACACATTCGAAGTCAAGCTAAACTTAACCGTAGGCATGCTAAATGGGTTGAATTTATTGAATCTTTTCCATATGTCATCAAACATAAGAAGGGAAAAGAAAATGTCATTGCCGATGCTTTGTCACGACGTTACACAATGCTATCCCAACTTGACTTCAAAATTTTTGGCTTGGAAACAATAAAAGAGCAATATGCACAAGATGATGATTTTAAAGATGTGTTGTTGAATTGCAAGGAGGGAAGGACTTGGAACAAATTCGTTCTCACCAATGGGTTTGTGTTTAGAGCTAATAAGTTATGCATTCCAGCTAGCTCCGTGCGTATGCTATTATTGCAGGAAGCGCATGGTGGAGGGCTAATGGGACACTTTGGTGTGAAGAAGACGGAGGATATCCTTGCTGATAATTTCTTTTGGCCCAAGATGAGGAGAGACGTGGAGAGGTTCGTTGCTCGCTGCACAACATGCCAAAAAGCTAAGTCACGCCTTAACCCTCATGGTTTGTATATGCCTTTGCCTGTTCCTAGTGTGCCTTGGGAGGATATTTCTATGGACTTTGTTTTAGGGCTGCCTAGAACAAAGAAGGGGAGGGACAATATCTTTGTTGTTGTAGATAGATTTTCTAAGATGGCGCATTTCATACCTTGTCATAAGAGTGATGATGCTACACATGTTGCTGATTTGTTCTTTCGTGAGACTGTTCGCTTGCATGGAGTGCCAAACACCATAGTTTCTGATCGCGATACAAAATACCTTGGTCATTTTTGGAGAACCTTGTGGGCTAAGTTGGGGACTAAACTTTTATTTTCTACTACATGTCACCCCCAAACTGATGGACAAACTATGGTGGTGAATAGAACATTATCTACAATGCTTAGGGCTGTTTTGAAAAAGAATATTAAAAATGTGGGAAGAATATTTGCCTCATGTTGAGTTTGCTTATAATCGTTCGCAACATTCTATTACTAAGAAGTGCCCTTTTGAGATTGTTTATGGCCTTCTGCCCCATGCTCCAATTGATCTTTTGCCCCTCCCAACTTCAGAGAGAGTGAACTTTGATGCAAAACAGCGCACTGAATTGATGTTAAAACGGCATGAGACCACTAAGGAGAACATAGAGCGCATGAATATTAAGTATAAACTTGCTGGGAGCAAAGGAAAGAAACATGTTACTTTTAAACCTGGTGATTTGGTTTGGTTGCATTTGAGAAAGGATAGGTTCCCTAATTTGAGAAAATCTAAGTTGCTACCTAGAGCTGATGGTCCTTTCAAAGTGATACAAAAGATTAATGATAACGCATACAAGCTTGAGCTACCTGCCGATTTTGGGGTTAGCCCCACGTTCAACATTGCAGATTTAAAGCCATATTTGGGAGAAGAAGATGAGTTAGAGTCGAGGACGACTCAAATGCAAGAAGGGGAGGATGATGAGGACATACCTTCCAATGATACAACCATGCCTATTGCACAGCAAGGACCAATGACTAGAGCTCGAGCTCATGAACTTAATTATCAGGTAAAGTGATTCCTAGCTAATCATACAAGTTCTTCTCAGAATTGGGTGCTACTAAATGGTTGTTGTGATCTACTTGTTGTTAGAAATATGGGAGAGGAACCAGATCGCAAGCAGCACTAGCAGCGCTGATTTGATGAAGTCAATGCTCTTCACTTCGGAGGGCAAACGGGGCAAATGAGTACTTGTTGGAAAGATCTCGTCGTGTACTTTCAGCTATGTGTGGCCTCAAATTTGACCCAGGCTGCTCAGAATGACGAAAATAGTTCTTCACATCAGAAAGGGCTTGGGCCTTGTATCTTTACAGCCCATTAGGGGTCCACAAAACCTAGGGTTTGCTCCCACCTCCTCTCCTGGTCATTCCTTCCCCTATATAAACTCCTAGCAGCCACCATTTTGCACTTTGGGTTTTGTTTAGATGTAAGTTTAGCTGCAGCTACTTCCTTGTACTTGCGTGTGTCGGCTAGACCACCCGGATACTTGTATTCAGAACCCCATTTTGGTTTGTTTCAGTTTCATCACTTGACAAGTGCCGTGACCTGTTTCCTTGTCAACTTGTTCTTGCTTGTTCTTCGATTGCTTGCAGGTTCAAGGTTGTTCTTGGCACGGCAAGAACAGAAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCACAGCACCCCTGTGGTAGTTGTAGTCGAACCGCCAACGTCGTGTCCTCCCCCAAATCGAAGTTTATCCTCCTCTCATCGAAAGATCGGGAACCCCCGTTGCTGCATCAAGGACGACCACAACGGCGCTGGTGACGAGGACGACGAGTTCGTGCGCTAGTAATAGGGTGCGCAAGGATAGAAATTGATAGGAATGATAGAAAAGTGTGGATGGAAAACACGACAAGGTGACACGGTTTTAATTTCCCCATTCTAGTGGCACGTTACCGATATCGTGAATAGTAGTTGTATTTTTTTAATTTGTCATATTTGTAGTAGCATAAATCCAAATAACCCTAAAATAAATTGCACAACCTGATTTCCCAATTAACTTATCCCTCTTGTTTTCCGCACGCGCGCTTTTCAAACTATTAACGGCGTTTCTTTTGTAAGAATTTTCTATACGAAAGTTGTTTTAAAAATTATATTAATCCATTTTTTAAAAAAAATTAACTAATACTTAATTAATCATGCGTTAATGCACACACCATTTTGCGTATCGGAGAGGAGGGGTTCCCAACTCCTCCTCCCGAACACAGCCTTAAGTGATTAGGATCTCCGTAGGGGAGATGGAGGGATCTGGCAGCCTATAGGCTCTTTGGCAGGAAATAATCTGGAAATAGGTGGTAATCCTATCCCAGATTCAATCGGGTCTCCAGTCTTTGCACTCCAGGGTGTCGAGACGGACGGCAGTAGCGACCTCCGGGTGTCTGCGCAGCACCAGCAAGAGTTGAGGCGGACAGCAGCATGCAGCAACCTCCCAGGGAAGTGGCTGACAAGCCTGCGTTGGTGCGAAAGCAACACGCTCCCTCCACTATCAGCGTCCACATCTGGACGCGACTCCTAG
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| CDS seq | ATGGGGGTCGCTGGGGAGTCCATGCCTCTGGTTGTAGAGGGGGGAATTGAAGTAGATCAAGCCAAGGTTGAAGCCATACATAGCTGGCCGGTTCCAACAATGATCACAGAAGTGAGAAGCTTTCTAGGAGTTGCTGGGTTCTACCGCCGCTTTGTGAAGGATTTTAGCACCATTGCAGCCCCACTACATGAGCTTACCAAGAGAAATGAAGCGCATGGTGGAGGGCTAATGGGACACTTTGGTGTGAAGAAGACGGAGGATATCCTTGCTGATAATTTCTTTTGGCCCAAGATGAGGAGAGACGTGGAGAGGTTCGTTGCTCGCTGCACAACATGCCAAAAAGCTAAGTCACGCCTTAACCCTCATGGTTTGTATATGCCTTTGCCTGTTCCTAGTGTGCCTTGGGAGGATATTTCTATGGACTTTGTTTTAGGGCTGCCTAGAACAAAGAAGGGGAGGGACAATATCTTTGTTGTTGTAGATAGATTTTCTAAGATGGCGCATTTCATACCTTGTCATAAGAGTGATGATGCTACACATGTTGCTGATTTGTTCTTTCGTGAGACTGTTCGCTTGCATGGAGTGCCAAACACCATAGTTTCTGATCGCGATACAAAATACCTTGAGAGAGTGAACTTTGATGCAAAACAGCGCACTGAATTGATGTTAAAACGGCATGAGACCACTAAGGAGAACATAGAGCGCATGAATATTAAGTATAAACTTGCTGGGAGCAAAGGAAAGAAACATGTTACTTTTAAACCTGGTGATTTGGTTTGGTTGCATTTGAGAAAGGATAGGTTCCCTAATTTGAGAAAATCTAAGTTGCTACCTAGAGCTGATGGTCCTTTCAAAGTGATACAAAAGATTAATGATAACGCATACAAGCTTGAGCTACCTGCCGATTTTGGGGTTAGCCCCACGTTCAACATTGCAGATTTAAAGCCATATTTGGGAGAAGAAGATGAGTTAGAGTCGAGGACGACTCAAATGCAAGAAGGGGAGGATGATGAGGACATACCTTCCAATGATACAACCATGCCTATTGCACAGCAAGGACCAATGACTAGAGCTCGAGCTCATGAACTTAATTATCAGGTTCAAGGTTGTTCTTGGCACGGCAAGAACAGAAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCACAGCACCCCTGTGGGTGTCGAGACGGACGGCAGTAGCGACCTCCGGGTGTCTGCGCAGCACCAGCAAGAGTTGAGGCGGACAGCAGCATGCAGCAACCTCCCAGGGAAGTGGCTGACAAGCCTGCGTTGGTGCGAAAGCAACACGCTCCCTCCACTATCAGCGTCCACATCTGGACGCGACTCCTAG
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| Protein seq | MGVAGESMPLVVEGGIEVDQAKVEAIHSWPVPTMITEVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNEAHGGGLMGHFGVKKTEDILADNFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDNIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRETVRLHGVPNTIVSDRDTKYLERVNFDAKQRTELMLKRHETTKENIERMNIKYKLAGSKGKKHVTFKPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVIQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTMPIAQQGPMTRARAHELNYQVQGCSWHGKNRNNVESVYRLLRHSTPVGVETDGSSDLRVSAQHQQELRRTAACSNLPGKWLTSLRWCESNTLPPLSASTSGRDS |
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| Function | Transposon Ty3-I Gag-Pol polyprotein [UniProtKB/Swiss-Prot:Q7LHG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0199000 | OsZS97_10T0199000.1 | Chr10 | 12744300 | 12748711 | + | makerRMon | ||
| CDS seq | ATGGGGGTCGCTGGGGAGTCCATGCCTCTGGTTGTAGAGGGGGGAATTGAAGTAGATCAAGCCAAGGTTGAAGCCATACATAGCTGGCCGGTTCCAACAATGATCACAGAAGTGAGAAGCTTTCTAGGAGTTGCTGGGTTCTACCGCCGCTTTGTGAAGGATTTTAGCACCATTGCAGCCCCACTACATGAGCTTACCAAGAGAAATGAAGCGCATGGTGGAGGGCTAATGGGACACTTTGGTGTGAAGAAGACGGAGGATATCCTTGCTGATAATTTCTTTTGGCCCAAGATGAGGAGAGACGTGGAGAGGTTCGTTGCTCGCTGCACAACATGCCAAAAAGCTAAGTCACGCCTTAACCCTCATGGTTTGTATATGCCTTTGCCTGTTCCTAGTGTGCCTTGGGAGGATATTTCTATGGACTTTGTTTTAGGGCTGCCTAGAACAAAGAAGGGGAGGGACAATATCTTTGTTGTTGTAGATAGATTTTCTAAGATGGCGCATTTCATACCTTGTCATAAGAGTGATGATGCTACACATGTTGCTGATTTGTTCTTTCGTGAGACTGTTCGCTTGCATGGAGTGCCAAACACCATAGTTTCTGATCGCGATACAAAATACCTTGAGAGAGTGAACTTTGATGCAAAACAGCGCACTGAATTGATGTTAAAACGGCATGAGACCACTAAGGAGAACATAGAGCGCATGAATATTAAGTATAAACTTGCTGGGAGCAAAGGAAAGAAACATGTTACTTTTAAACCTGGTGATTTGGTTTGGTTGCATTTGAGAAAGGATAGGTTCCCTAATTTGAGAAAATCTAAGTTGCTACCTAGAGCTGATGGTCCTTTCAAAGTGATACAAAAGATTAATGATAACGCATACAAGCTTGAGCTACCTGCCGATTTTGGGGTTAGCCCCACGTTCAACATTGCAGATTTAAAGCCATATTTGGGAGAAGAAGATGAGTTAGAGTCGAGGACGACTCAAATGCAAGAAGGGGAGGATGATGAGGACATACCTTCCAATGATACAACCATGCCTATTGCACAGCAAGGACCAATGACTAGAGCTCGAGCTCATGAACTTAATTATCAGGTTCAAGGTTGTTCTTGGCACGGCAAGAACAGAAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCACAGCACCCCTGTGGGTGTCGAGACGGACGGCAGTAGCGACCTCCGGGTGTCTGCGCAGCACCAGCAAGAGTTGAGGCGGACAGCAGCATGCAGCAACCTCCCAGGGAAGTGGCTGACAAGCCTGCGTTGGTGCGAAAGCAACACGCTCCCTCCACTATCAGCGTCCACATCTGGACGCGACTCCTAG
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| Protein seq | MGVAGESMPLVVEGGIEVDQAKVEAIHSWPVPTMITEVRSFLGVAGFYRRFVKDFSTIAAPLHELTKRNEAHGGGLMGHFGVKKTEDILADNFFWPKMRRDVERFVARCTTCQKAKSRLNPHGLYMPLPVPSVPWEDISMDFVLGLPRTKKGRDNIFVVVDRFSKMAHFIPCHKSDDATHVADLFFRETVRLHGVPNTIVSDRDTKYLERVNFDAKQRTELMLKRHETTKENIERMNIKYKLAGSKGKKHVTFKPGDLVWLHLRKDRFPNLRKSKLLPRADGPFKVIQKINDNAYKLELPADFGVSPTFNIADLKPYLGEEDELESRTTQMQEGEDDEDIPSNDTTMPIAQQGPMTRARAHELNYQVQGCSWHGKNRNNVESVYRLLRHSTPVGVETDGSSDLRVSAQHQQELRRTAACSNLPGKWLTSLRWCESNTLPPLSASTSGRDS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.0049115 | 0.0040555 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g16650 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0007630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0007670 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0007790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0007700 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0186100 | RBH | 0.0088285 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0007660 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0278100 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007390 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0007430 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0007870 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0007340 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0007960 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0007650 | RBH | 0.0 | 0.0 | 0.0 |
