Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsZS97_10G0196700 | OGI:10036250 | 1/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:12651312-12653756 | ||||||||
Gene Symbol | - | ||||||||||
DNA seq | ATGAAACTAAACCCTGAAAAATGCACCTTCGAAGTACCGTCAGGGAAGTTGCTTGGATTTATGGTGTCTCATAGAGGCATACAAGCCAACCCGGAGAAAGTCAACGCCATCCTTAACATGAAACCACCGAGCTCCCAGAAAGACGTTCAGAAGCTAACTGGATGCATGGCGGCGCTCAGCCAATTCATCTCACGACTTGGTGAGCGGGGGATGCCCTTCTTCAAGCTGTTAAAGAAAACAGATAATTTCCAATGGGGACCCGAAGCACAGAAGGCCTTCGAAGACTTCAAGAAACTCCTCACCACTCCACCAGTCTTGGCCTCGCCACACCCACAAGAGCCGCTGCTACTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCCTGGTTGTCGAGCGTGAGGAAGAAGGCCATGTTCAGAAAGTCCAGCGACCAATCTACTTCATCAGCGAGATCCTGGCTGACTCCAAGACGAGGTATCCTCAGGTTCAGAAGCTGTTATACGGTGTTCTGATCACCGCCAGGAAACTATCCCATTATTTCCAAAGCCACTCGGTCACAGTAGTTACATCGTTCCCACTCGGCGATATACTGCATAACCGTGAAGCAAATGGACGGATTGCAAAATGGGCCTTAGAACTGATGTCTTTGGACATATCATTCAAGCCCCGGACCTCAATCATGTCCCAAGCTTTAGCAGATTTCGTCGCCGAGTGGACCGAGTGCCAGGAGGATATCCCCGAAGAAAAGATGGAGCACTGGACCATGCATTTTGACGGATCGAAAAGACTTTTAGGCACGAGAGCTGGAGTAGTTTTAATTTCCCCAACTGGAGAAAGACTAAGTTATGTGCTTTGGATACATTTTTCTGCGTCTCACAACGTCGCGGAGTATGAGGCGCTCCTCCACGGACTACGGATCGCAATTTCCCTAGGAATTAAGCGTTTAATAGTTCGTGGAGACTCACAGCTAGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGATAACATGATGGCTTACCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGACGGACTCGAGCTCAGTCACGTTCTCCGACACAACAACGAAGCCACCGACAGACTAGCAAACTTTGGATCTAAGCGCGAAGCGGCCTCCTCCGATGTGTTCGTCGAACACCTTTACGAGCCAACCGTACCCCAGAAAGAAACGACTCAAGTTGCAGACACTCAAGACATAGCCATGGTTGAAGCCGACTGGAGAGAACCCCTCATACGATTTTTAACCTCCCAAGAACTCACTCAAGACAAAGATGAAGCCGAGCGGATTTCCAGGCGCAGCAGGCTTTACATTATTCATGAAGCCGAGCTATATAAGAAAAGCCCTTCAGGAATTCTGCAACGCTGTGTATCCTTAGAAGAAGGGAGACAACTGCTTAAAGACATACATTCTGGTATCTGCGGAAATCATGCTGCCGCGCGCACCATTGTCGGCAAAGCTTACCGGCAGGGTATTTTCTGGCCCACTGCTATGTCCGATGCCGACAAGATTGTGCGAACGTGCGAAGGTTGTCAATTTTTCGCCAGACAAATCCATCTACCGGCTCAGGAGTTGCAAACTATCCCGCTGTCTTTGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGTCCATTCAAAAAGGCAGTCGGTGGTTATATGCATCTATTTGTGGCCATTGATAAATTCTCCAAGTGGATTGAAGCTAAACCAGTCATCACAATCACGGCAGATAAAGCCAGGGATTTTTTCATCAACATTGTGCATCAGTTTGGAGTACCCAACCGGATCATTACCGATAATGGCACGCAATTCACAGGCGGAGTATTTAAAGACTTTTGTGAAGACTTCGGAATCAAAATTTGCTATGCCTCCGTAGCGCATCCCATGAGTAACGGACAAGTTGAGCGAGCCAATGGCATGATACTTCAAGGAATAAAGGCACGAGTTTTTGACCGACTAAATCCCTATGCCGGAAAATGGGTGGAACAGCTACCATCAGTACTTTGGTCTTTGCGCACTACTCCCAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTAGTCTACGGGGTAGAAGCAATGTTGCCTAGTGAAGTTGAATTCGAATCTTTGCGTTTTCGCAATTTTCGCGAAGAACGCTATGGAGAGGACCGAGTGGATGACCTGCACCGATTGGACGAGGCCCGCGAGGCAGCTTTAATTCAGTCGGCTCGATATTTACAAGGGTTGCGACATTATCATAATCGCAACGTCCGATCACGAGCTATCCTAGTCGGCGACCTGGTTCTGAGGAATATTCAAACTACACGGGATCGGCACAAATTATCTCCTTTATGGGAAGGGCCATTCATAATTGTCGCGTCCCAAAACGACTCTAAAATACATCCTCAAAATTATGCCGAGAATAATTAA
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CDS seq | ATGAAACTAAACCCTGAAAAATGCACCTTCGAAGTACCGTCAGGGAAGTTGCTTGGATTTATGGTGTCTCATAGAGGCATACAAGCCAACCCGGAGAAAGTCAACGCCATCCTTAACATGAAACCACCGAGCTCCCAGAAAGACGTTCAGAAGCTAACTGGATGCATGGCGGCGCTCAGCCAATTCATCTCACGACTTGGTGAGCGGGGGATGCCCTTCTTCAAGCTGTTAAAGAAAACAGATAATTTCCAATGGGGACCCGAAGCACAGAAGGCCTTCGAAGACTTCAAGAAACTCCTCACCACTCCACCAGTCTTGGCCTCGCCACACCCACAAGAGCCGCTGCTACTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCCTGGTTGTCGAGCGTGAGGAAGAAGGCCATGTTCAGAAAGTCCAGCGACCAATCTACTTCATCAGCGAGATCCTGGCTGACTCCAAGACGAGGTATCCTCAGGTTCAGAAGCTGTTATACGGTGTTCTGATCACCGCCAGGAAACTATCCCATTATTTCCAAAGCCACTCGGTCACAGTAGTTACATCGTTCCCACTCGGCGATATACTGCATAACCGTGAAGCAAATGGACGGATTGCAAAATGGGCCTTAGAACTGATGTCTTTGGACATATCATTCAAGCCCCGGACCTCAATCATGTCCCAAGCTTTAGCAGATTTCGTCGCCGAGTGGACCGAGTGCCAGGAGGATATCCCCGAAGAAAAGATGGAGCACTGGACCATGCATTTTGACGGATCGAAAAGACTTTTAGGCACGAGAGCTGGAGTAGTTTTAATTTCCCCAACTGGAGAAAGACTAAGTTATGTGCTTTGGATACATTTTTCTGCGTCTCACAACGTCGCGGAGTATGAGGCGCTCCTCCACGGACTACGGATCGCAATTTCCCTAGGAATTAAGCGTTTAATAGTTCGTGGAGACTCACAGCTAGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGATAACATGATGGCTTACCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGACGGACTCGAGCTCAGTCACGTTCTCCGACACAACAACGAAGCCACCGACAGACTAGCAAACTTTGGATCTAAGCGCGAAGCGGCCTCCTCCGATGTGTTCGTCGAACACCTTTACGAGCCAACCGTACCCCAGAAAGAAACGACTCAAGTTGCAGACACTCAAGACATAGCCATGGTTGAAGCCGACTGGAGAGAACCCCTCATACGATTTTTAACCTCCCAAGAACTCACTCAAGACAAAGATGAAGCCGAGCGGATTTCCAGGCGCAGCAGGCTTTACATTATTCATGAAGCCGAGCTATATAAGAAAAGCCCTTCAGGAATTCTGCAACGCTGTGTATCCTTAGAAGAAGGGAGACAACTGCTTAAAGACATACATTCTGGTATCTGCGGAAATCATGCTGCCGCGCGCACCATTGTCGGCAAAGCTTACCGGCAGGGTATTTTCTGGCCCACTGCTATGTCCGATGCCGACAAGATTGTGCGAACGTGCGAAGGTTGTCAATTTTTCGCCAGACAAATCCATCTACCGGCTCAGGAGTTGCAAACTATCCCGCTGTCTTTGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGTCCATTCAAAAAGGCAGTCGGTGGTTATATGCATCTATTTGTGGCCATTGATAAATTCTCCAAGTGGATTGAAGCTAAACCAGTCATCACAATCACGGCAGATAAAGCCAGGGATTTTTTCATCAACATTGTGCATCAGTTTGGAGTACCCAACCGGATCATTACCGATAATGGCACGCAATTCACAGGCGGAGTATTTAAAGACTTTTGTGAAGACTTCGGAATCAAAATTTGCTATGCCTCCGTAGCGCATCCCATGAGTAACGGACAAGTTGAGCGAGCCAATGGCATGATACTTCAAGGAATAAAGGCACGAGTTTTTGACCGACTAAATCCCTATGCCGGAAAATGGGTGGAACAGCTACCATCAGTACTTTGGTCTTTGCGCACTACTCCCAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTAGTCTACGGGGTAGAAGCAATGTTGCCTAGTGAAGTTGAATTCGAATCTTTGCGTTTTCGCAATTTTCGCGAAGAACGCTATGGAGAGGACCGAGTGGATGACCTGCACCGATTGGACGAGGCCCGCGAGGCAGCTTTAATTCAGTCGGCTCGATATTTACAAGGGTTGCGACATTATCATAATCGCAACGTCCGATCACGAGCTATCCTAGTCGGCGACCTGGTTCTGAGGAATATTCAAACTACACGGGATCGGCACAAATTATCTCCTTTATGGGAAGGGCCATTCATAATTGTCGCGTCCCAAAACGACTCTAAAATACATCCTCAAAATTATGCCGAGAATAATTAA
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Protein seq | MKLNPEKCTFEVPSGKLLGFMVSHRGIQANPEKVNAILNMKPPSSQKDVQKLTGCMAALSQFISRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTTPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFISEILADSKTRYPQVQKLLYGVLITARKLSHYFQSHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRTSIMSQALADFVAEWTECQEDIPEEKMEHWTMHFDGSKRLLGTRAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEATDRLANFGSKREAASSDVFVEHLYEPTVPQKETTQVADTQDIAMVEADWREPLIRFLTSQELTQDKDEAERISRRSRLYIIHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGIFWPTAMSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSLPFAVWGLDMVGPFKKAVGGYMHLFVAIDKFSKWIEAKPVITITADKARDFFINIVHQFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLNPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGVEAMLPSEVEFESLRFRNFREERYGEDRVDDLHRLDEAREAALIQSARYLQGLRHYHNRNVRSRAILVGDLVLRNIQTTRDRHKLSPLWEGPFIIVASQNDSKIHPQNYAENN |
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Function | Gag-Pol polyprotein [UniProtKB/Swiss-Prot:P10273] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsZS97_10G0196700 | OsZS97_10T0196700.1 | Chr10 | 12651312 | 12653756 | + | makerRMon | ||
CDS seq | ATGAAACTAAACCCTGAAAAATGCACCTTCGAAGTACCGTCAGGGAAGTTGCTTGGATTTATGGTGTCTCATAGAGGCATACAAGCCAACCCGGAGAAAGTCAACGCCATCCTTAACATGAAACCACCGAGCTCCCAGAAAGACGTTCAGAAGCTAACTGGATGCATGGCGGCGCTCAGCCAATTCATCTCACGACTTGGTGAGCGGGGGATGCCCTTCTTCAAGCTGTTAAAGAAAACAGATAATTTCCAATGGGGACCCGAAGCACAGAAGGCCTTCGAAGACTTCAAGAAACTCCTCACCACTCCACCAGTCTTGGCCTCGCCACACCCACAAGAGCCGCTGCTACTGTATGTATCAGCCACCTCCCAGGTTGTGAGCACAGTCCTGGTTGTCGAGCGTGAGGAAGAAGGCCATGTTCAGAAAGTCCAGCGACCAATCTACTTCATCAGCGAGATCCTGGCTGACTCCAAGACGAGGTATCCTCAGGTTCAGAAGCTGTTATACGGTGTTCTGATCACCGCCAGGAAACTATCCCATTATTTCCAAAGCCACTCGGTCACAGTAGTTACATCGTTCCCACTCGGCGATATACTGCATAACCGTGAAGCAAATGGACGGATTGCAAAATGGGCCTTAGAACTGATGTCTTTGGACATATCATTCAAGCCCCGGACCTCAATCATGTCCCAAGCTTTAGCAGATTTCGTCGCCGAGTGGACCGAGTGCCAGGAGGATATCCCCGAAGAAAAGATGGAGCACTGGACCATGCATTTTGACGGATCGAAAAGACTTTTAGGCACGAGAGCTGGAGTAGTTTTAATTTCCCCAACTGGAGAAAGACTAAGTTATGTGCTTTGGATACATTTTTCTGCGTCTCACAACGTCGCGGAGTATGAGGCGCTCCTCCACGGACTACGGATCGCAATTTCCCTAGGAATTAAGCGTTTAATAGTTCGTGGAGACTCACAGCTAGTCGTCAACCAAGTTATGAAAGAGTGGTCCTGCCTTGACGATAACATGATGGCTTACCGACAAGAGGTACGCAAATTGGAAGACAAGTTCGACGGACTCGAGCTCAGTCACGTTCTCCGACACAACAACGAAGCCACCGACAGACTAGCAAACTTTGGATCTAAGCGCGAAGCGGCCTCCTCCGATGTGTTCGTCGAACACCTTTACGAGCCAACCGTACCCCAGAAAGAAACGACTCAAGTTGCAGACACTCAAGACATAGCCATGGTTGAAGCCGACTGGAGAGAACCCCTCATACGATTTTTAACCTCCCAAGAACTCACTCAAGACAAAGATGAAGCCGAGCGGATTTCCAGGCGCAGCAGGCTTTACATTATTCATGAAGCCGAGCTATATAAGAAAAGCCCTTCAGGAATTCTGCAACGCTGTGTATCCTTAGAAGAAGGGAGACAACTGCTTAAAGACATACATTCTGGTATCTGCGGAAATCATGCTGCCGCGCGCACCATTGTCGGCAAAGCTTACCGGCAGGGTATTTTCTGGCCCACTGCTATGTCCGATGCCGACAAGATTGTGCGAACGTGCGAAGGTTGTCAATTTTTCGCCAGACAAATCCATCTACCGGCTCAGGAGTTGCAAACTATCCCGCTGTCTTTGCCGTTTGCGGTTTGGGGGCTCGACATGGTTGGTCCATTCAAAAAGGCAGTCGGTGGTTATATGCATCTATTTGTGGCCATTGATAAATTCTCCAAGTGGATTGAAGCTAAACCAGTCATCACAATCACGGCAGATAAAGCCAGGGATTTTTTCATCAACATTGTGCATCAGTTTGGAGTACCCAACCGGATCATTACCGATAATGGCACGCAATTCACAGGCGGAGTATTTAAAGACTTTTGTGAAGACTTCGGAATCAAAATTTGCTATGCCTCCGTAGCGCATCCCATGAGTAACGGACAAGTTGAGCGAGCCAATGGCATGATACTTCAAGGAATAAAGGCACGAGTTTTTGACCGACTAAATCCCTATGCCGGAAAATGGGTGGAACAGCTACCATCAGTACTTTGGTCTTTGCGCACTACTCCCAGTCGGGCCACAGGCCAGTCACCTTTTTTCCTAGTCTACGGGGTAGAAGCAATGTTGCCTAGTGAAGTTGAATTCGAATCTTTGCGTTTTCGCAATTTTCGCGAAGAACGCTATGGAGAGGACCGAGTGGATGACCTGCACCGATTGGACGAGGCCCGCGAGGCAGCTTTAATTCAGTCGGCTCGATATTTACAAGGGTTGCGACATTATCATAATCGCAACGTCCGATCACGAGCTATCCTAGTCGGCGACCTGGTTCTGAGGAATATTCAAACTACACGGGATCGGCACAAATTATCTCCTTTATGGGAAGGGCCATTCATAATTGTCGCGTCCCAAAACGACTCTAAAATACATCCTCAAAATTATGCCGAGAATAATTAA
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Protein seq | MKLNPEKCTFEVPSGKLLGFMVSHRGIQANPEKVNAILNMKPPSSQKDVQKLTGCMAALSQFISRLGERGMPFFKLLKKTDNFQWGPEAQKAFEDFKKLLTTPPVLASPHPQEPLLLYVSATSQVVSTVLVVEREEEGHVQKVQRPIYFISEILADSKTRYPQVQKLLYGVLITARKLSHYFQSHSVTVVTSFPLGDILHNREANGRIAKWALELMSLDISFKPRTSIMSQALADFVAEWTECQEDIPEEKMEHWTMHFDGSKRLLGTRAGVVLISPTGERLSYVLWIHFSASHNVAEYEALLHGLRIAISLGIKRLIVRGDSQLVVNQVMKEWSCLDDNMMAYRQEVRKLEDKFDGLELSHVLRHNNEATDRLANFGSKREAASSDVFVEHLYEPTVPQKETTQVADTQDIAMVEADWREPLIRFLTSQELTQDKDEAERISRRSRLYIIHEAELYKKSPSGILQRCVSLEEGRQLLKDIHSGICGNHAAARTIVGKAYRQGIFWPTAMSDADKIVRTCEGCQFFARQIHLPAQELQTIPLSLPFAVWGLDMVGPFKKAVGGYMHLFVAIDKFSKWIEAKPVITITADKARDFFINIVHQFGVPNRIITDNGTQFTGGVFKDFCEDFGIKICYASVAHPMSNGQVERANGMILQGIKARVFDRLNPYAGKWVEQLPSVLWSLRTTPSRATGQSPFFLVYGVEAMLPSEVEFESLRFRNFREERYGEDRVDDLHRLDEAREAALIQSARYLQGLRHYHNRNVRSRAILVGDLVLRNIQTTRDRHKLSPLWEGPFIIVASQNDSKIHPQNYAENN
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0 | 0 | 0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g19130 | SBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0206000 | SBH | 0.0021705 | 0 | 0 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0016200 | SBH | 0.0140505 | 0.0082385 | 0.00391 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |