Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_10G0054900 | OGI:10010450 | 5/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr10:3379969-3383913 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCTGAACACACAAGAAGCAACCGAATGTTTGGTAAATTTCTTGCTTGAATCATCATGTGTATATTTTTTCACCATTTTTCAATGTTCTGTACAAATGTTTGTGCACAGAGGAGATACAAAAGTAAATTTGCTGAAAGAAATGGAGATAGAAGTGATCCTATGAGCTCTCCAGTGGACTCTTTAGCTCTTTATGAGAGCAATTATGGGAAACCTCATGGTAAATGGCCTCTATTCAATGGAGTTGTTAACAACAAAGAGGCACTCGTAGAAGTGAAAAGTGGCTCATCTTCATCAGCTCTCAAGCATCAACGTCGTGAAGCAGAAGATCTTCAAAGAAGGCGAGAATCTGAGAAGTTCCAACTACAGAATGTTTATACAAAGAAAATGTCAGAGTGGAGTACAAAGGCATACAAAAGCTATACAATGGGACATAAGCTTCTTGAGGTGCAATCTTTCTTCTATAAGGAGAAAATTTTGACTTGTTTTAATTTTTTTGTCATCACTAAAAGAATTATATTTAAGTTGGTTAATCATATGTATTTGCAGACAATGGCTAGGGACCAAGGATATTCTTCTGCTGACATTCCTCCTCCCTTATCTCCACCTCCTGAACCTCCAACAAGTCCAGTTATTGTTCTTGTAAGTGATGCTGATATATAGCTGCATGTGCTACTGAAACTACCTAACCGTTCTGAATTACACATTGCAACTCAAGCAAATGCTAGTGATTTTTCATGTTCTAGTCATGCTCTGCCACATGAGTATCTATCAGTACCTTGCATATTGTTAGTTTTGTTGTTTGCCCTATATATACAAGCCTTATCAAACAAATTGGTTGTTCACTAAATTTGTTGAATAAAATTGTAACAATTGTTTTTTTATAGGATGACTCCCAAGTATCATGTGTTAGAGAGGAAACTGGAGATGACAGGGTAAATGTTATAGCTGAAGGAATGTTTGGTGGCTACTTGACCAATTCATCTGCTAATGGTGCCACCACCTTTCTCCCAGCTTTAGATGAACTTGATCCATTTTAATTTCAACTGGCTGTGGTCATAGGGCTAACTTTTGGGAAAACTTGGTAGTTATAGTGCCTAACTTTTGGGTAAAGCTGATTCTTACCGAAACATGTGTAATGAAGTGGAATTATGCCATTTTGAGGGCAAGATGATTATAATGCATCTTTTGAATGCTATATATGGTGCTGGTGGATTTAAACAATATTTTGTTCCTGTGTTTAATCATATTATGTGTGGTGGTGGTCTTTGTGCAATATTACTTACCTTTAGTGCAATTTATTTTACATAAATCCTAATGAATTGATTAACATCATAAATTGTAATAATTATATTAAAAAAATGCTCAACGTAATAAGTAATTCCTAGGGAATGCATGTTTTTGTTCCCTAGGGTTTCAAAACGAATCTAACAACTCTAGGGACAGTAACTTTACACGTCACTTGACACCCACCGGCTTGTCATTTTTCCCTAGGTCAAACAACCCTAGGGAGCATTCCTTTCCCTAGGTTTCTCTTGCAAAAACCCTAGGGAGCTCTTTGTTTCCCGTAGACCGTTTCCCTAGAGGGCATTCCCTAGGGTTCACTCTAGGGAAACCTCTTCCCTAGAGTTTTTGCACCATTCCGTTGGGTTTTTGGCTCTAGGGATGCCATTGAATTCTAGTATGCGACGTATAGTAGCGGGGGCGGAGCACAGCGGTCAGTGGCGCCACAGGTTCTCCCGATTTGTGTGTAAGGCATCCCAAATTTCTCCCGATCTTGATTGGTTCATGTTTTTGGGATGTATTGGTTGGTGTTTCTAGGGATGGATTAGTTGATTATTGGTTAAAATTTCTTGCCGATTTATGTCTATTATTGGTTGATTGGTTGTTGTTGGATGCAAAGATGCTGCTCTTTTTATAGGGATGGATTGGTTAACAGATCCACCCGCGAAATATATTTTTGCATGTGGGTCTTTTAAGGAGCCGTACGAAAAAATGCTTGTTGGGTTTTGCAGGCACAACTAGTTACGATGATCCGCCTGCAACCTACAGGGGGCTCTTGTCCAGAAAAATCGTTTTTTTAGTAGTGTGCATAATATGAGATGTTAGTCCTATGACAGTTTGAAGTCACTTTACAGCTCAAAGAAGGATGTAAACGTTTCTAAAAAAGGAAGCATCTAAACAGAATATTGGACGATAAAGACGCATTTGCCAACTTTACTTATATATTCTGTTGTTTTAAGCATATATTCTGATACGCGACTGGTTCCCTTCCAAAGTTCCACTCTACCTATATGCCATACGTTTTTCTCCTTTGTACAAATCTTCAGTTCACAATTGCTTTTCATACCTAGATTTCAAATAATTTAAGTGAAACATATAAAACTTTTTAACTCCTCAAACTTTCAACTGAGATCACAAACATTATACCAAAATCTAAAACATCTTTGTATTCAAAATCTTTAACTTCTTCCAATTAAATCTCTGAGTTTTTGCTCAAATCTTGAACTTTCAACCGGTTGCAGAGCTCATCACCGGAGAAGATATAAAGTAAGAGGGTGCAGAGAAAGAAGGCAATGGTCGTCTCGCTAGGAAAAGGACCCCAAGATTGCTATTAGCACAACTTGGGGAAGAAAGAAGGGCCTCGCACTTGCCGCAACTACAACAAAAGTTTTATATAAAGACACTTTTTGTAGAGGTATTTTGCAAATTGCCTCTTAGATCGGGAGTTTTATAGTGTAGAGACACTTTATAGAGGCACTTTAAAAATTGCCTAGAAAACTTTTACTCTATGAACACTTTAGAAATATTTTCAGCACCATTTCATTACATTTTATCTTGTAGAGGCATTCTTTCGGCACTTTAAACTGTGCCTGATATATAAAGGCATTTTCTCGAGACACTTTAAACTCTGTAAAGACACTTCTTACAATAAAAATATATACTAAATGACTAAATATAAGTAACTCAAGGCAACAACATACAAGTAATGACTTTGGGGTTGAGTTGGTTAGTGCCTTGAAGATAAGAATGATTTGTGCAATTGATCATGAGTTCAAGGATTGGCAAAAAAAACAAGGGAAAATATTTTATTGTTTTTTTCATTGGTCTCATATGGTTGTGGTACAATATAATGTCTCTAAAAAATATCTCTACCATCTTATAGACATTTTGTAAAATGTCTCTTCGTTTGTAGAGACAATTCACCGTAAGGCACTTATTAGGTATTTTTTAAAGTGCATGTATAGTATTGTAAAGGCATTTTTTGAAAAGTGACTATAGTACTAGAAAAATATCAAATTATCTCTACAAAGTATTTTTCTTGCAATGCGCCGTGTTACTATGGAAGAGGAAGAATGGTAGCTAGAGCAAATGGCTGCTGGTGTCTTGCTATGGTGAGGAACAGGAATATGTGACGTGATGGCTTGCGTAAAGGCACGAGGTGGTGTCAAGCCATGCGAAGCAAGTAAGGAAGTGATGAATTAATGTACTTGACAGATAGAGAGTAAATAAGGTGTTTGCTATTTCTGTTTGCACATGGATGTTCATCAAATAGGGGCTCTTTGGCATATGGGCCAATACGTACTTTCTAGATATCAGTTCTCAATCAGCTTTCTTTATGACAGATGGCAATTACAGTTTAGAAGATGACAAATACACAATATCAGTTGTAGTACATGAACAATGATTAAAATGATTCACGATTATGATTGTAATCTCTACTATTATAAACATTGATATTATTTATGCTAATAGTACTTTATTTGTCGTCTAATTTTTTATGTCACCGTGTCTCTGGGCGAGGTGAACCGCGCACCGAGTGGCCCATGCACGCATGCACTCGCTCAGTCACTCTCAGATGCTGCCAGCCGTGCTATGCGTACGCAATCCTCACTTGGTCGCTTCTGATATACTCGTTGCGCTTGCCGGGCCATCTGCCAACTAG
More
|
||||||||||
| CDS seq | ATGCTGAACACACAAGAAGCAACCGAATGTTTGAGGAGATACAAAAGTAAATTTGCTGAAAGAAATGGAGATAGAAGTGATCCTATGAGCTCTCCAGTGGACTCTTTAGCTCTTTATGAGAGCAATTATGGGAAACCTCATGGTAAATGGCCTCTATTCAATGGAGTTGTTAACAACAAAGAGGCACTCGTAGAAGTGAAAAGTGGCTCATCTTCATCAGCTCTCAAGCATCAACGTCGTGAAGCAGAAGATCTTCAAAGAAGGCGAGAATCTGAGAAGTTCCAACTACAGAATGTTTATACAAAGAAAATGTCAGAGTGGAGTACAAAGGCATACAAAAGCTATACAATGGGACATAAGCTTCTTGAGACAATGGCTAGGGACCAAGGATATTCTTCTGCTGACATTCCTCCTCCCTTATCTCCACCTCCTGAACCTCCAACAAGTCCAGTTATTGTTCTTGATGACTCCCAAGTATCATGTGTTAGAGAGGAAACTGGAGATGACAGGGTAAATGTTATAGCTGAAGGAATGTTTGGTGGCTACTTGACCAATTCATCTGCTAATGAGCTCATCACCGGAGAAGATATAAATCACTCTCAGATGCTGCCAGCCGTGCTATGCGTACGCAATCCTCACTTGGTCGCTTCTGATATACTCGTTGCGCTTGCCGGGCCATCTGCCAACTAG
More
|
||||||||||
| Protein seq | MLNTQEATECLRRYKSKFAERNGDRSDPMSSPVDSLALYESNYGKPHGKWPLFNGVVNNKEALVEVKSGSSSSALKHQRREAEDLQRRRESEKFQLQNVYTKKMSEWSTKAYKSYTMGHKLLETMARDQGYSSADIPPPLSPPPEPPTSPVIVLDDSQVSCVREETGDDRVNVIAEGMFGGYLTNSSANELITGEDINHSQMLPAVLCVRNPHLVASDILVALAGPSAN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_10G0054900 | OsZS97_10T0054900.1 | Chr10 | 3379969 | 3383913 | + | makerRMon | ||
| CDS seq | ATGCTGAACACACAAGAAGCAACCGAATGTTTGAGGAGATACAAAAGTAAATTTGCTGAAAGAAATGGAGATAGAAGTGATCCTATGAGCTCTCCAGTGGACTCTTTAGCTCTTTATGAGAGCAATTATGGGAAACCTCATGGTAAATGGCCTCTATTCAATGGAGTTGTTAACAACAAAGAGGCACTCGTAGAAGTGAAAAGTGGCTCATCTTCATCAGCTCTCAAGCATCAACGTCGTGAAGCAGAAGATCTTCAAAGAAGGCGAGAATCTGAGAAGTTCCAACTACAGAATGTTTATACAAAGAAAATGTCAGAGTGGAGTACAAAGGCATACAAAAGCTATACAATGGGACATAAGCTTCTTGAGACAATGGCTAGGGACCAAGGATATTCTTCTGCTGACATTCCTCCTCCCTTATCTCCACCTCCTGAACCTCCAACAAGTCCAGTTATTGTTCTTGATGACTCCCAAGTATCATGTGTTAGAGAGGAAACTGGAGATGACAGGGTAAATGTTATAGCTGAAGGAATGTTTGGTGGCTACTTGACCAATTCATCTGCTAATGAGCTCATCACCGGAGAAGATATAAATCACTCTCAGATGCTGCCAGCCGTGCTATGCGTACGCAATCCTCACTTGGTCGCTTCTGATATACTCGTTGCGCTTGCCGGGCCATCTGCCAACTAG
More
|
|||||||
| Protein seq | MLNTQEATECLRRYKSKFAERNGDRSDPMSSPVDSLALYESNYGKPHGKWPLFNGVVNNKEALVEVKSGSSSSALKHQRREAEDLQRRRESEKFQLQNVYTKKMSEWSTKAYKSYTMGHKLLETMARDQGYSSADIPPPLSPPPEPPTSPVIVLDDSQVSCVREETGDDRVNVIAEGMFGGYLTNSSANELITGEDINHSQMLPAVLCVRNPHLVASDILVALAGPSAN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 7.914375 | 14.8765775 | 35.220169 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0002720 | RBH | 0.636969 | 0.329063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0002440 | RBH | 1.627977 | 0.0 | 0.345912 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
