Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_08G0105000 | OGI:08018890 | 2/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr08:6801738-6803219 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCTGAGAACAGGTCAGACAGTCTAACAGACAGCGAAACATGGACAATGACGTTCGACGGCACACTCAACAACCAAGGAGTAGGAGCAGGGTTCATCTTGACATCACCTTCGGGGGATCAATTCAAACATGCAATCCACCTCAACTTCAGGGCGACCAACAACACAGCCGAGTACGAAGGATTACTTGCCGGGATAAGAGCAGCAGCTGCACTCGGAGTTAGGCGACTAGTTGTGAAAGGGGATTCAGAACTAGTCGCGAACCAAGTGCACCAAGATTACAAATGCTCTAGCCCCGAGTTATCCAAGTACCTCGCAGAAGTCAGGAAGCTGGAGAAGAGGTTTGATGGGATCGAGGTCTAACATGTATATCGTAAGAACAACATTGAATCGGACGACCTAGCACGGCGCGCATCCCGACGAGAGCCACTTGAACCTGGCTCTTTTTTGGACATCCTGACAAAGCCATCAGTGAAAGAGGCAAACGACGAAGGCAGCACGGTCGTCCTCGACATCAGCTCGGGGGCTACAGAGGCGGAACACGTCGTTGCCGATATCAAGACCACGGAAGACTGGCGGACCCCGCTCATTAAGTTGCTGAGTAGTGATGAGTTGCCCGAAGACGACAGAGAAGCTGAGAAGATAACCCGACAAGCCAAAATCTACTGTATGATCGGCAAAGATCTGTACAAAAAGGCTCCAAACGGAGTACTTCTCAAATGCATCTCGTCCGACGACGGCAAACATCTCCTCCTGGACATACACAAAGGAATCTACGGGTCACACGCCGCCGGGCGAACATTTGTAGGAAAAGCTTTTCGACAAGGGTTTTTCTGGCCAACCGCGCTCAGAGACACCTACGACATGGTGCAAAGGTGTGAAGCCTATCAATTTCACAGCAAACACACAAGACTACTAGCGCAAGCGCTCCAGACTATCCCTCTTACTTGGCCGTTCTCGTGCTGGGGGCTCGACATACTCAGACCATTCCCACGAGGACAAGGCGGCCACAAGTTCCTGTTTGTGTCCATCGACAAATTCACCAAGTGGATTGAGGCAACGCCCACAGGAGAAATCAAGGCCGATAATGCCATCAAGTTTGTCAAAGGGATATTCTGCAGATATGGATTGCCTCACCGCATCATAACAGACAACGGCTCTCAGTTCATCAGCGCTGACTTCCAGGATTACTGTATTGGATTGGGAGTCAAGATTTGCTTCGCCTCGGTTTCTCACCCTCAGAGCAATGGACAAGTCGAAAGGGCAAACGGCATAGTGCTACAAGGGATCAAGACCCGTGTCTACGACAGACTCATGTCACACGACAATAAATGGGTCGAAAAACTTCCCTCTGTACTATGGGCCGTACGCACCACACCGACAACGACCAACAAGGAGACACCCTTCTTCCTCATGTATGGCTCAGAAGCTGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTTAA
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| CDS seq | ATGCCTGAGAACAGGTCAGACAGTCTAACAGACAGCGAAACATGGACAATGACGTTCGACGGCACACTCAACAACCAAGGAGTAGGAGCAGGGTTCATCTTGACATCACCTTCGGGGGATCAATTCAAACATGCAATCCACCTCAACTTCAGGGCGACCAACAACACAGCCGAGTACGAAGGATTACTTGCCGGGATAAGAGCAGCAGCTGCACTCGGAGTTAGGCGACTAGTTGTGAAAGGGGATTCAGAACTAGTCGCGAACCAAGTGCACCAAGATTACAAATGCTCTAGCCCCGAGTTATCCAAGTACCTCGCAGAAGTCAGGAAGCTGGAGAAGAGGTTTGATGGGATCGAGCCATCAGTGAAAGAGGCAAACGACGAAGGCAGCACGGTCGTCCTCGACATCAGCTCGGGGGCTACAGAGGCGGAACACGTCGTTGCCGATATCAAGACCACGGAAGACTGGCGGACCCCGCTCATTAAGTTGCTGAGTAGTGATGAGTTGCCCGAAGACGACAGAGAAGCTGAGAAGATAACCCGACAAGCCAAAATCTACTGTATGATCGGCAAAGATCTGTACAAAAAGGCTCCAAACGGAGTACTTCTCAAATGCATCTCGTCCGACGACGGCAAACATCTCCTCCTGGACATACACAAAGGAATCTACGGGTCACACGCCGCCGGGCGAACATTTGTAGGAAAAGCTTTTCGACAAGGGTTTTTCTGGCCAACCGCGCTCAGAGACACCTACGACATGGTGCAAAGGTGTGAAGCCTATCAATTTCACAGCAAACACACAAGACTACTAGCGCAAGCGCTCCAGACTATCCCTCTTACTTGGCCGTTCTCGTGCTGGGGGCTCGACATACTCAGACCATTCCCACGAGGACAAGGCGGCCACAAGTTCCTGTTTGTGTCCATCGACAAATTCACCAAGTGGATTGAGGCAACGCCCACAGGAGAAATCAAGGCCGATAATGCCATCAAGTTTGTCAAAGGGATATTCTGCAGATATGGATTGCCTCACCGCATCATAACAGACAACGGCTCTCAGTTCATCAGCGCTGACTTCCAGGATTACTGTATTGGATTGGGAGTCAAGATTTGCTTCGCCTCGGTTTCTCACCCTCAGAGCAATGGACAAGTCGAAAGGGCAAACGGCATAGTGCTACAAGGGATCAAGACCCGTGTCTACGACAGACTCATGTCACACGACAATAAATGGGTCGAAAAACTTCCCTCTGTACTATGGGCCGTACGCACCACACCGACAACGACCAACAAGGAGACACCCTTCTTCCTCATGTATGGCTCAGAAGCTGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTTAA
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| Protein seq | MPENRSDSLTDSETWTMTFDGTLNNQGVGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGVRRLVVKGDSELVANQVHQDYKCSSPELSKYLAEVRKLEKRFDGIEPSVKEANDEGSTVVLDISSGATEAEHVVADIKTTEDWRTPLIKLLSSDELPEDDREAEKITRQAKIYCMIGKDLYKKAPNGVLLKCISSDDGKHLLLDIHKGIYGSHAAGRTFVGKAFRQGFFWPTALRDTYDMVQRCEAYQFHSKHTRLLAQALQTIPLTWPFSCWGLDILRPFPRGQGGHKFLFVSIDKFTKWIEATPTGEIKADNAIKFVKGIFCRYGLPHRIITDNGSQFISADFQDYCIGLGVKICFASVSHPQSNGQVERANGIVLQGIKTRVYDRLMSHDNKWVEKLPSVLWAVRTTPTTTNKETPFFLMYGSEAVTPGISIQNSKRLHVC |
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| Function | Gypsy retrotransposon integrase-like protein 1 [UniProtKB/Swiss-Prot:Q8K259] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_08G0105000 | OsZS97_08T0105000.1 | Chr08 | 6801738 | 6803219 | + | makerRMon | ||
| CDS seq | ATGCCTGAGAACAGGTCAGACAGTCTAACAGACAGCGAAACATGGACAATGACGTTCGACGGCACACTCAACAACCAAGGAGTAGGAGCAGGGTTCATCTTGACATCACCTTCGGGGGATCAATTCAAACATGCAATCCACCTCAACTTCAGGGCGACCAACAACACAGCCGAGTACGAAGGATTACTTGCCGGGATAAGAGCAGCAGCTGCACTCGGAGTTAGGCGACTAGTTGTGAAAGGGGATTCAGAACTAGTCGCGAACCAAGTGCACCAAGATTACAAATGCTCTAGCCCCGAGTTATCCAAGTACCTCGCAGAAGTCAGGAAGCTGGAGAAGAGGTTTGATGGGATCGAGCCATCAGTGAAAGAGGCAAACGACGAAGGCAGCACGGTCGTCCTCGACATCAGCTCGGGGGCTACAGAGGCGGAACACGTCGTTGCCGATATCAAGACCACGGAAGACTGGCGGACCCCGCTCATTAAGTTGCTGAGTAGTGATGAGTTGCCCGAAGACGACAGAGAAGCTGAGAAGATAACCCGACAAGCCAAAATCTACTGTATGATCGGCAAAGATCTGTACAAAAAGGCTCCAAACGGAGTACTTCTCAAATGCATCTCGTCCGACGACGGCAAACATCTCCTCCTGGACATACACAAAGGAATCTACGGGTCACACGCCGCCGGGCGAACATTTGTAGGAAAAGCTTTTCGACAAGGGTTTTTCTGGCCAACCGCGCTCAGAGACACCTACGACATGGTGCAAAGGTGTGAAGCCTATCAATTTCACAGCAAACACACAAGACTACTAGCGCAAGCGCTCCAGACTATCCCTCTTACTTGGCCGTTCTCGTGCTGGGGGCTCGACATACTCAGACCATTCCCACGAGGACAAGGCGGCCACAAGTTCCTGTTTGTGTCCATCGACAAATTCACCAAGTGGATTGAGGCAACGCCCACAGGAGAAATCAAGGCCGATAATGCCATCAAGTTTGTCAAAGGGATATTCTGCAGATATGGATTGCCTCACCGCATCATAACAGACAACGGCTCTCAGTTCATCAGCGCTGACTTCCAGGATTACTGTATTGGATTGGGAGTCAAGATTTGCTTCGCCTCGGTTTCTCACCCTCAGAGCAATGGACAAGTCGAAAGGGCAAACGGCATAGTGCTACAAGGGATCAAGACCCGTGTCTACGACAGACTCATGTCACACGACAATAAATGGGTCGAAAAACTTCCCTCTGTACTATGGGCCGTACGCACCACACCGACAACGACCAACAAGGAGACACCCTTCTTCCTCATGTATGGCTCAGAAGCTGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTTAA
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| Protein seq | MPENRSDSLTDSETWTMTFDGTLNNQGVGAGFILTSPSGDQFKHAIHLNFRATNNTAEYEGLLAGIRAAAALGVRRLVVKGDSELVANQVHQDYKCSSPELSKYLAEVRKLEKRFDGIEPSVKEANDEGSTVVLDISSGATEAEHVVADIKTTEDWRTPLIKLLSSDELPEDDREAEKITRQAKIYCMIGKDLYKKAPNGVLLKCISSDDGKHLLLDIHKGIYGSHAAGRTFVGKAFRQGFFWPTALRDTYDMVQRCEAYQFHSKHTRLLAQALQTIPLTWPFSCWGLDILRPFPRGQGGHKFLFVSIDKFTKWIEATPTGEIKADNAIKFVKGIFCRYGLPHRIITDNGSQFISADFQDYCIGLGVKICFASVSHPQSNGQVERANGIVLQGIKTRVYDRLMSHDNKWVEKLPSVLWAVRTTPTTTNKETPFFLMYGSEAVTPGISIQNSKRLHVC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g11440 | RBH | 0.120371 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0005290 | SBH | 0.793385 | 5.205525 | 4.885180 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0005310 | SBH | 0.336700 | 0.676014 | 1.094957 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0005350 | SBH | 0.600266 | 0.000000 | 5.005242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005330 | SBH | 0.147439 | 0.165950 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0005030 | SBH | 4.744100 | 4.531651 | 3.476120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0060500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0004870 | SBH | 0.297755 | 0.637010 | 0.466896 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0406000 | SBH | 0.0038315 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0004990 | SBH | 0.163867 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0005060 | SBH | 0.177923 | 4.728515 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0005130 | SBH | 0.399444 | 0.622998 | 0.251579 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G004980 | SBH | 0.348771 | 1.590630 | 1.490409 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004950 | SBH | 1.571585 | 0.0 | 1.152029 |
