Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_08G0001500 | OGI:08000190 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr08:157551-160461 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAGTTATATTTTGGATTCATTTTTCTTGTTCTTTTGGGTCTGGTCTTAGAAGGCTCATCTTCTATCTGACCATTTGGAATTGTTGGAATTTGGTGCTTCAAATCAGTATTATTTGTCTTAATGTCATCAACTTCTTTTGCCGATCTTTTTCTGCCTCTTCTGGCTGTAGTGGCAACAGATCTTTGCTCGATGCACTTATTGTCAAGGCCTGATTTTCCAACTTGAAGCTCTATCCTTTTGATGTAATTTTTTGTAGTGCACTCGTCCTCTGATTCATCTTCTATCACAAAAGATCTCCGCCTTTTCTCATTGGTACTCAGCTTGATTCCTTGTTTTAGTATAGGTTCATCACTATCTTCCAGTTGAGCATCTGCTAGTTGTTGCTTACCAGGAGTGCTTGCTTTTATCTCACCAATTTTTGTGGACAATTTTTTCCCTCTCTTTTTGGCTGATTTAGTTCCATCGCTATCTTCTAATTGAGCATCAGTTTCTTGTTTCCTATAAACGCTTGTTTTTTTCTCACCAAGATTTCTAGTCAATCTTTTTCCTATCCTCTTGCTTATGGTGGCAACTGGTTCTGGTTGTGGTCTCTGTAAGACACTTGTTTTAGTACAATCTTCTTTTATGTCTTCTTCTGAGCCGTCTTCTAGGCCTTCTTCTGAGTCGTTTTCTAGGTCTTCTTCTGAGTCGTTTTCTTCTCCAGTGTCGTCTTCAATGGTAATGTATTCCTTTGTTGTTTGACTACCACGTTGAATTTTTCTCGATGAAGTTGTCTCATCTTTATCTCCATCACTATCTTCTGGTTCTTGTTTGATATGCACATATAAGCTGGATTCTCTTCTGTTAGGTGGATAGTTCAATTTATCCTTTTCATTGTTTAGCAAATCCTATAAAAAATAATACAAAATCAGAATATAGTGATAGAAACAAAATCATTAATATTTGATTTTATACAGAGGAAATGCACACTAACCTTAGCTTTATCATCCAAGTGTTGCATTTCAAGTTTATCATCAGGCACAAATGTTCTTCTTACTATATAGTTTGACTTGCCTTGAGTTAAATTTTCAATATTGAGCTTGAGTTGAAATATAAATGTCCTTCCACATAATTGTTGTATAATTGTAGGAACTTCTTCACATCTCCCATCCAGTGAATTGAGCAAGCTTGAGATAGATGTATTCAACATTCTTTGTGCCACATCATCAAATAATGTGCAATTTGCAGTAGTCGTATGATCACTTATACAGAGTCGAATAAAATACCTAATGTAGCAGTGATGTTAGTTCAATATGAGAAGTGCAAAATAATGTTGTTGAAATCAATTGGGTATGCTTAGTTGCTTACCGAGGTTTAGTATTTTCTGGATACATCTTGCACTTTTCACAATAGTACTTGTCGATTTTTTTTACAACTTTTTTGTTGCAATCATTGCATGACATGTATCACCATGTGACATCTTGTAAATGATCAATCGTAGCTTTGGTCGTACAAATGAAATCCTGTTAAAAAGGAAAAAAAACATTGTATTAGTTTTTTGGGTGGAACATAACATTAATAAAATGATGTTACAGTACAAGTTCAGATTTATGGATTTAGCGCAAATACTGCATCTAATAAGAAGAGTGAATTCTTACCTGACTTTTTGTGTCATCATGTCCCATGTTTGTAATCTCTTGCAAGGTTTTCCTGTTATAGAACATTTGTTCTTCCATTGTACCTTGTGTACTTTTATCCACCTCCATGAGTTTTGGCAAATTTTGTTCATCCGAGTGCCTATAAATTAGATAGCAATAATATAGCAGGCATTTTAATGTTGGAAAGTAATAAGGGGTTAAAGTTTTCATTCAATCAAGAAATAAGTAGGTAAATAAAGGAAACAAACCTTGAAATAATTTTCCAGGTCTCAGGTATATTTATATCTGTATATAATCTTGTGGCACTGCTTGACCTCAAAGACAGACCTATTAAATACAAAATTACGCGTTACCTTTGTACATATGCTAAAAGTACTATAGAAAACATTGGAATTACCATTAAATTCTTGAACTGTTGTTGATGTAACAACCACAACAGTGTGGTTGCCAATCACATCTTCATTCAAAGAATGAGCTAACTGCCCCCATAACGTCACTCTGATTTTAGCACCACTGTAGATAACATTGTAAAAGACTTAGATAAGATTATGAAAGATATCAAAAATCGATTGAAAGGAAAGACAGCCATGTTTCTTACTCTAATAATAGAAGTTCAATCTCACGGATATCTTTAGGCCGTGGGTTTGTAGAGTTCTTCATTATCATTCTTGATTCTATGGGCTTAATTTTGGTAAGCAGTCCGATGACATCTGTCACCTTGGAATGTTAATTTTGTGATAATACAATTTGAATAGTGAAGTTAAATATTATTATACGCTTACCTGATAAAATTTTATCTTTATTTACTCTATCAACCAATGTTTCCCTTGTAGCAAACTCGAAGTAGTATTCTTTGAATTTGTTCGATGCTCCTTTCATTTCCTTCACCTTTGTATTGTACATGAAAGTAATCTTGAGATCTTTGTCTACTGGACAATATTTGGTAGATTCTTGGACCTTGAAATTGCTGAAGGCATAAATAGAGTTTTCACTAATCATTGGTCTAAAATTGTCAATAAGATTTTTCCAAATTGTAGCATGAATTGTTTCACCCTGTCAAAAACAGAATATATCTATTAGTGGTTGTTAAAAAAAAATTTAATTTATGTATCAAGTAAAGACAGAACCAAACCTCTTCATCCATTAAAAGCATATCAAAACTCATAATCTCATCTGTTGCAAAATTTACCGAATCCCACATTCTCAATATCTTTGCTTTGATGCTCCATGTTTGACCTTTTGTTGTCAACTCACTAATCTTCTTGTATGCCAT
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| CDS seq | ATGGCATACAAGAAGATTAGTGAGTTGACAACAAAAGGTCAAACATGGAGCATCAAAGCAAAGATATTGAGAATGTGGGATTCGGTAAATTTTGCAACAGATGAGATTATGAGTTTTGATATGCTTTTAATGGATGAAGAGGGTGAAACAATTCATGCTACAATTTGGAAAAATCTTATTGACAATTTTAGACCAATGATTAGTGAAAACTCTATTTATGCCTTCAGCAATTTCAAGGTCCAAGAATCTACCAAATATTGTCCAGTAGACAAAGATCTCAAGATTACTTTCATGTACAATACAAAGGTGAAGGAAATGAAAGGAGCATCGAACAAATTCAAAGAATACTACTTCGAGTTTGCTACAAGGGAAACATTGGTTGATAGAGTAAATAAAGATAAAATTTTATCAGATGTCATCGGACTGCTTACCAAAATTAAGCCCATAGAATCAAGAATGATAATGAAGAACTCTACAAACCCACGGCCTAAAGATATCCGTGAGATTGAACTTCTATTATTAGATGGTGCTAAAATCAGAGTGACGTTATGGGGGCAGTTAGCTCATTCTTTGAATGAAGATGTGATTGGCAACCACACTGTTGTGGTTGTTACATCAACAACAGTTCAAGAATTTAATGGTCTGTCTTTGAGGTCAAGCAGTGCCACAAGATTATATACAGATATAAATATACCTGAGACCTGGAAAATTATTTCAAGGCACTCGGATGAACAAAATTTGCCAAAACTCATGGAGGTGGATAAAAGTACACAAGGTACAATGGAAGAACAAATGTTCTATAACAGGAAAACCTTGCAAGAGATTACAAACATGGGACATGATGACACAAAAAGTCAGGATTTGCTAAACAATGAAAAGGATAAATTGAACTATCCACCTAACAGAAGAGAATCCAGCTTATATGTGCATATCAAACAAGAACCAGAAGATAGTGATGGAGATAAAGATGAGACAACTTCATCGAGAAAAATTCAACGTGGTAGTCAAACAACAAAGGAATACATTACCATTGAAGACGACACTGGAGAAGAAAACGACTCAGAAGAAGACCTAGAAAACGACTCAGAAGAAGGCCTAGAAGACGGCTCAGAAGAAGACATAAAAGAAGATTGTACTAAAACAAGTGTCTTACAGAGACCACAACCAGAACCAGTTGCCACCATAAGCAAGAGGATAGGAAAAAGATTGACTAGAAATCTTGGTGAGAAAAAAACAAGCGTTTATAGGAAACAAGAAACTGATGCTCAATTAGAAGATAGCGATGGAACTAAATCAGCCAAAAAGAGAGGGAAAAAATTGTCCACAAAAATTGGTGAGATAAAAGCAAGCACTCCTGGTAAGCAACAACTAGCAGATGCTCAACTGGAAGATAGTGATGAACCTATACTAAAACAAGGAATCAAGCTGAGTACCAATGAGAAAAGGCGGAGATCTTTTGTGATAGAAGATGAATCAGAGGACGAGTGCACTACAAAAAATTACATCAAAAGGATAGAGCTTCAAGTTGGAAAATCAGGCCTTGACAATAAGTGCATCGAGCAAAGATCTGTTGCCACTACAGCCAGAAGAGGCAGAAAAAGATCGGCAAAAGAAGTTGATGACATTAAGACAAATAATACTGATTTGAAGCACCAAATTCCAACAATTCCAAATGGTCAGATAGAAGATGAGCCTTCTAAGACCAGACCCAAAAGAACAAGAAAAATGAATCCAAAATATAACTAG
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| Protein seq | MAYKKISELTTKGQTWSIKAKILRMWDSVNFATDEIMSFDMLLMDEEGETIHATIWKNLIDNFRPMISENSIYAFSNFKVQESTKYCPVDKDLKITFMYNTKVKEMKGASNKFKEYYFEFATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNGLSLRSSSATRLYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTMEEQMFYNRKTLQEITNMGHDDTKSQDLLNNEKDKLNYPPNRRESSLYVHIKQEPEDSDGDKDETTSSRKIQRGSQTTKEYITIEDDTGEENDSEEDLENDSEEGLEDGSEEDIKEDCTKTSVLQRPQPEPVATISKRIGKRLTRNLGEKKTSVYRKQETDAQLEDSDGTKSAKKRGKKLSTKIGEIKASTPGKQQLADAQLEDSDEPILKQGIKLSTNEKRRRSFVIEDESEDECTTKNYIKRIELQVGKSGLDNKCIEQRSVATTARRGRKRSAKEVDDIKTNNTDLKHQIPTIPNGQIEDEPSKTRPKRTRKMNPKYN |
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| Function | Replication factor A protein 1 [UniProtKB/Swiss-Prot:Q92372] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_08G0001500 | OsZS97_08T0001500.1 | Chr08 | 157551 | 160461 | - | makerRMon | ||
| CDS seq | ATGGCATACAAGAAGATTAGTGAGTTGACAACAAAAGGTCAAACATGGAGCATCAAAGCAAAGATATTGAGAATGTGGGATTCGGTAAATTTTGCAACAGATGAGATTATGAGTTTTGATATGCTTTTAATGGATGAAGAGGGTGAAACAATTCATGCTACAATTTGGAAAAATCTTATTGACAATTTTAGACCAATGATTAGTGAAAACTCTATTTATGCCTTCAGCAATTTCAAGGTCCAAGAATCTACCAAATATTGTCCAGTAGACAAAGATCTCAAGATTACTTTCATGTACAATACAAAGGTGAAGGAAATGAAAGGAGCATCGAACAAATTCAAAGAATACTACTTCGAGTTTGCTACAAGGGAAACATTGGTTGATAGAGTAAATAAAGATAAAATTTTATCAGATGTCATCGGACTGCTTACCAAAATTAAGCCCATAGAATCAAGAATGATAATGAAGAACTCTACAAACCCACGGCCTAAAGATATCCGTGAGATTGAACTTCTATTATTAGATGGTGCTAAAATCAGAGTGACGTTATGGGGGCAGTTAGCTCATTCTTTGAATGAAGATGTGATTGGCAACCACACTGTTGTGGTTGTTACATCAACAACAGTTCAAGAATTTAATGGTCTGTCTTTGAGGTCAAGCAGTGCCACAAGATTATATACAGATATAAATATACCTGAGACCTGGAAAATTATTTCAAGGCACTCGGATGAACAAAATTTGCCAAAACTCATGGAGGTGGATAAAAGTACACAAGGTACAATGGAAGAACAAATGTTCTATAACAGGAAAACCTTGCAAGAGATTACAAACATGGGACATGATGACACAAAAAGTCAGGATTTGCTAAACAATGAAAAGGATAAATTGAACTATCCACCTAACAGAAGAGAATCCAGCTTATATGTGCATATCAAACAAGAACCAGAAGATAGTGATGGAGATAAAGATGAGACAACTTCATCGAGAAAAATTCAACGTGGTAGTCAAACAACAAAGGAATACATTACCATTGAAGACGACACTGGAGAAGAAAACGACTCAGAAGAAGACCTAGAAAACGACTCAGAAGAAGGCCTAGAAGACGGCTCAGAAGAAGACATAAAAGAAGATTGTACTAAAACAAGTGTCTTACAGAGACCACAACCAGAACCAGTTGCCACCATAAGCAAGAGGATAGGAAAAAGATTGACTAGAAATCTTGGTGAGAAAAAAACAAGCGTTTATAGGAAACAAGAAACTGATGCTCAATTAGAAGATAGCGATGGAACTAAATCAGCCAAAAAGAGAGGGAAAAAATTGTCCACAAAAATTGGTGAGATAAAAGCAAGCACTCCTGGTAAGCAACAACTAGCAGATGCTCAACTGGAAGATAGTGATGAACCTATACTAAAACAAGGAATCAAGCTGAGTACCAATGAGAAAAGGCGGAGATCTTTTGTGATAGAAGATGAATCAGAGGACGAGTGCACTACAAAAAATTACATCAAAAGGATAGAGCTTCAAGTTGGAAAATCAGGCCTTGACAATAAGTGCATCGAGCAAAGATCTGTTGCCACTACAGCCAGAAGAGGCAGAAAAAGATCGGCAAAAGAAGTTGATGACATTAAGACAAATAATACTGATTTGAAGCACCAAATTCCAACAATTCCAAATGGTCAGATAGAAGATGAGCCTTCTAAGACCAGACCCAAAAGAACAAGAAAAATGAATCCAAAATATAACTAG
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| Protein seq | MAYKKISELTTKGQTWSIKAKILRMWDSVNFATDEIMSFDMLLMDEEGETIHATIWKNLIDNFRPMISENSIYAFSNFKVQESTKYCPVDKDLKITFMYNTKVKEMKGASNKFKEYYFEFATRETLVDRVNKDKILSDVIGLLTKIKPIESRMIMKNSTNPRPKDIREIELLLLDGAKIRVTLWGQLAHSLNEDVIGNHTVVVVTSTTVQEFNGLSLRSSSATRLYTDINIPETWKIISRHSDEQNLPKLMEVDKSTQGTMEEQMFYNRKTLQEITNMGHDDTKSQDLLNNEKDKLNYPPNRRESSLYVHIKQEPEDSDGDKDETTSSRKIQRGSQTTKEYITIEDDTGEENDSEEDLENDSEEGLEDGSEEDIKEDCTKTSVLQRPQPEPVATISKRIGKRLTRNLGEKKTSVYRKQETDAQLEDSDGTKSAKKRGKKLSTKIGEIKASTPGKQQLADAQLEDSDEPILKQGIKLSTNEKRRRSFVIEDESEDECTTKNYIKRIELQVGKSGLDNKCIEQRSVATTARRGRKRSAKEVDDIKTNNTDLKHQIPTIPNGQIEDEPSKTRPKRTRKMNPKYN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0.301155 | 0.022005 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0001500 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0001510 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0001500 | RBH | 0 | 0.0409275 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0397000 | RBH | 0.2878415 | 0.861447 | 0.4012 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0000180 | RBH | 0.192999 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013750 | SBH | 0.202399 | 3.900005 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013570 | SBH | 0.217361 | 0.000000 | 1.630732 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0004540 | SBH | 0.0 | 0.0 | 0.000000 |
