Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_07G0170500 | OGI:07026100 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr07:10098254-10099861 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGTTGCTGACGCTCTAAGTCGGAGGAGCCATTGCAACACTCTTAACGTCCGTGGCATTCCACCCGAGCTTAGTCAACAGATGGAAGCCCTGAACCTAAGCATAGTGGGTCGCGGATTCTTGGCTGCGTTGGAAGCCAAGCCTACCTTGCTCGATCAAATCCGCGAGGCTCAGAAGAATGATCCGGACATGCATGGACTCCTCAAGAATATGAAACAGGGTAAAGCCGCTGGTTTCACAGAGGATGAACACGGAACCCTATGGAACGGAAAGCGGGTATGCGTTCCAGATAGCAGAGAACTTAAACAGTTGATACTTCAGGAAGCTCACGAAAGTCCTTATTCAATCCACCCTGGCAGTACCAAGATGTACTTAGACTTGAAGGAGAAATACTGGTGGGTTAGCATGAAGTGGGAAATTGCAGAGTTCGTGGCTCTATGTGATGTGTGCCAGCGTGTCAAGGCAGAACACCAACGACCGGCCGGACTTCTCCAACCTCTCCAAGTACCAGAATGGAAGTGGGATGAAATTGGGATGGATTTCATCACCGGACTTCCAAAAACCCAAGGCGGATATGATTCTATATGGGTAGTTGTGGATCGGTTAACCAAGGTGGCTCGATTCATTCCTGTGAAGACCACCTATGGAGGGAATAAACTAGCGGAGCTCTACTTCGCTAGGATCGTGAGTCTCCATGGCGTTCCCAAGAAAATCGTATCTGATAGGGGAAGCCAATTCACCTCTCACTTTTGGAAGAAGCTCCAAGAAGAGTTGGGCACCCGATTAAATTTCAGCACCGCCTATCACCCGCAGACAGATGGACAGACCGAGCGTCTAAATCAGATCCTAGAAGATATGCTCCGCGCATGTGTCCTAGATTTCGGGAAGACCTGGGATAAGAGTCTCCCCTATGCCGAGTTCTCCTACAACAACAGCTATCAGGCCCGCATACAAATGGCACCGTATGAAGCGTTGTATGGGCGCAAATGCCGGACACCGCTATTGTGGGACCAAGTTGGAGAAAGCCAAGTGTTCGGGACTGATATCCTGAGAGAAGCTGAAGCTAAAGTCAGAATCATTCGGGATAATCTAAAGGTGGCACAGTCCCGGCAGAAAAGTTATGCAGATAACCGTCGCCGTGACCTGGAATTCGCAGTGGGTGACTTTGTGTATCTTCGGGTCACGCCATTGCGAGGTGTACACAGGTTTCAGACAAAAGGGAAGCTCGCACCTCGGTATGTGGGTCCTTTCCGTATCATTGCTCGGCACGGAGAAGTCGCTTACCAGCTGGAGCTGCCCGCCTCCTTGGGCAACGTGCATGATGTGTTCCATGTGTCGCAACTCAAGAAATGTCTTCGAGTGCCATCCGAGCAGGCTGACTCAGAGCAAATTGAAGTTCGCGAAGACTTGACCTATGTGGAGAGGCCAGTGAAAATCCTGGACACCATGGAGCGCAGGACCAGGAACCGGGTAATCCGTTTTTGCAAGGTCCAGTGGAGCAACCACACCGAAGAAGAAGCTACTTGGGAGCGCGAAGACGAGCTGAAGGCAGCCCATCCCGATCTCTTCGCCAGTTCCTCCGAATCTCGGGGTCGAGATTCCGTTTAA
More
|
||||||||||
| CDS seq | ATGGTTGCTGACGCTCTAAGTCGGAGGAGCCATTGCAACACTCTTAACGTCCGTGGCATTCCACCCGAGCTTAGTCAACAGATGGAAGCCCTGAACCTAAGCATAGTGGGTCGCGGATTCTTGGCTGCGTTGGAAGCCAAGCCTACCTTGCTCGATCAAATCCGCGAGGCTCAGAAGAATGATCCGGACATGCATGGACTCCTCAAGAATATGAAACAGGGTAAAGCCGCTGGTTTCACAGAGGATGAACACGGAACCCTATGGAACGGAAAGCGGGTATGCGTTCCAGATAGCAGAGAACTTAAACAGTTGATACTTCAGGAAGCTCACGAAAGTCCTTATTCAATCCACCCTGGCAGTACCAAGATGTACTTAGACTTGAAGGAGAAATACTGGTGGGTTAGCATGAAGTGGGAAATTGCAGAGTTCGTGGCTCTATGTGATGTGTGCCAGCGTGTCAAGGCAGAACACCAACGACCGGCCGGACTTCTCCAACCTCTCCAAGTACCAGAATGGAAGTGGGATGAAATTGGGATGGATTTCATCACCGGACTTCCAAAAACCCAAGGCGGATATGATTCTATATGGGTAGTTGTGGATCGGTTAACCAAGGTGGCTCGATTCATTCCTGTGAAGACCACCTATGGAGGGAATAAACTAGCGGAGCTCTACTTCGCTAGGATCGTGAGTCTCCATGGCGTTCCCAAGAAAATCGTATCTGATAGGGGAAGCCAATTCACCTCTCACTTTTGGAAGAAGCTCCAAGAAGAGTTGGGCACCCGATTAAATTTCAGCACCGCCTATCACCCGCAGACAGATGGACAGACCGAGCGTCTAAATCAGATCCTAGAAGATATGCTCCGCGCATGTGTCCTAGATTTCGGGAAGACCTGGGATAAGAGTCTCCCCTATGCCGAGTTCTCCTACAACAACAGCTATCAGGCCCGCATACAAATGGCACCGTATGAAGCGTTGTATGGGCGCAAATGCCGGACACCGCTATTGTGGGACCAAGTTGGAGAAAGCCAAGTGTTCGGGACTGATATCCTGAGAGAAGCTGAAGCTAAAGTCAGAATCATTCGGGATAATCTAAAGGTGGCACAGTCCCGGCAGAAAAGTTATGCAGATAACCGTCGCCGTGACCTGGAATTCGCAGTGGGTGACTTTGTGTATCTTCGGGTCACGCCATTGCGAGGTGTACACAGGTTTCAGACAAAAGGGAAGCTCGCACCTCGGTATGTGGGTCCTTTCCGTATCATTGCTCGGCACGGAGAAGTCGCTTACCAGCTGGAGCTGCCCGCCTCCTTGGGCAACGTGCATGATGTGTTCCATGTGTCGCAACTCAAGAAATGTCTTCGAGTGCCATCCGAGCAGGCTGACTCAGAGCAAATTGAAGTTCGCGAAGACTTGACCTATGTGGAGAGGCCAGTGAAAATCCTGGACACCATGGAGCGCAGGACCAGGAACCGGGTAATCCGTTTTTGCAAGGTCCAGTGGAGCAACCACACCGAAGAAGAAGCTACTTGGGAGCGCGAAGACGAGCTGAAGGCAGCCCATCCCGATCTCTTCGCCAGTTCCTCCGAATCTCGGGGTCGAGATTCCGTTTAA
More
|
||||||||||
| Protein seq | MVADALSRRSHCNTLNVRGIPPELSQQMEALNLSIVGRGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKWEIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQARIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARHGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHTEEEATWEREDELKAAHPDLFASSSESRGRDSV |
||||||||||
| Function | Transposon Tf2-8 polyprotein [UniProtKB/Swiss-Prot:P0CT43] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_07G0170500 | OsZS97_07T0170500.1 | Chr07 | 10098254 | 10099861 | + | makerRMon | ||
| CDS seq | ATGGTTGCTGACGCTCTAAGTCGGAGGAGCCATTGCAACACTCTTAACGTCCGTGGCATTCCACCCGAGCTTAGTCAACAGATGGAAGCCCTGAACCTAAGCATAGTGGGTCGCGGATTCTTGGCTGCGTTGGAAGCCAAGCCTACCTTGCTCGATCAAATCCGCGAGGCTCAGAAGAATGATCCGGACATGCATGGACTCCTCAAGAATATGAAACAGGGTAAAGCCGCTGGTTTCACAGAGGATGAACACGGAACCCTATGGAACGGAAAGCGGGTATGCGTTCCAGATAGCAGAGAACTTAAACAGTTGATACTTCAGGAAGCTCACGAAAGTCCTTATTCAATCCACCCTGGCAGTACCAAGATGTACTTAGACTTGAAGGAGAAATACTGGTGGGTTAGCATGAAGTGGGAAATTGCAGAGTTCGTGGCTCTATGTGATGTGTGCCAGCGTGTCAAGGCAGAACACCAACGACCGGCCGGACTTCTCCAACCTCTCCAAGTACCAGAATGGAAGTGGGATGAAATTGGGATGGATTTCATCACCGGACTTCCAAAAACCCAAGGCGGATATGATTCTATATGGGTAGTTGTGGATCGGTTAACCAAGGTGGCTCGATTCATTCCTGTGAAGACCACCTATGGAGGGAATAAACTAGCGGAGCTCTACTTCGCTAGGATCGTGAGTCTCCATGGCGTTCCCAAGAAAATCGTATCTGATAGGGGAAGCCAATTCACCTCTCACTTTTGGAAGAAGCTCCAAGAAGAGTTGGGCACCCGATTAAATTTCAGCACCGCCTATCACCCGCAGACAGATGGACAGACCGAGCGTCTAAATCAGATCCTAGAAGATATGCTCCGCGCATGTGTCCTAGATTTCGGGAAGACCTGGGATAAGAGTCTCCCCTATGCCGAGTTCTCCTACAACAACAGCTATCAGGCCCGCATACAAATGGCACCGTATGAAGCGTTGTATGGGCGCAAATGCCGGACACCGCTATTGTGGGACCAAGTTGGAGAAAGCCAAGTGTTCGGGACTGATATCCTGAGAGAAGCTGAAGCTAAAGTCAGAATCATTCGGGATAATCTAAAGGTGGCACAGTCCCGGCAGAAAAGTTATGCAGATAACCGTCGCCGTGACCTGGAATTCGCAGTGGGTGACTTTGTGTATCTTCGGGTCACGCCATTGCGAGGTGTACACAGGTTTCAGACAAAAGGGAAGCTCGCACCTCGGTATGTGGGTCCTTTCCGTATCATTGCTCGGCACGGAGAAGTCGCTTACCAGCTGGAGCTGCCCGCCTCCTTGGGCAACGTGCATGATGTGTTCCATGTGTCGCAACTCAAGAAATGTCTTCGAGTGCCATCCGAGCAGGCTGACTCAGAGCAAATTGAAGTTCGCGAAGACTTGACCTATGTGGAGAGGCCAGTGAAAATCCTGGACACCATGGAGCGCAGGACCAGGAACCGGGTAATCCGTTTTTGCAAGGTCCAGTGGAGCAACCACACCGAAGAAGAAGCTACTTGGGAGCGCGAAGACGAGCTGAAGGCAGCCCATCCCGATCTCTTCGCCAGTTCCTCCGAATCTCGGGGTCGAGATTCCGTTTAA
More
|
|||||||
| Protein seq | MVADALSRRSHCNTLNVRGIPPELSQQMEALNLSIVGRGFLAALEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGKRVCVPDSRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWWVSMKWEIAEFVALCDVCQRVKAEHQRPAGLLQPLQVPEWKWDEIGMDFITGLPKTQGGYDSIWVVVDRLTKVARFIPVKTTYGGNKLAELYFARIVSLHGVPKKIVSDRGSQFTSHFWKKLQEELGTRLNFSTAYHPQTDGQTERLNQILEDMLRACVLDFGKTWDKSLPYAEFSYNNSYQARIQMAPYEALYGRKCRTPLLWDQVGESQVFGTDILREAEAKVRIIRDNLKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARHGEVAYQLELPASLGNVHDVFHVSQLKKCLRVPSEQADSEQIEVREDLTYVERPVKILDTMERRTRNRVIRFCKVQWSNHTEEEATWEREDELKAAHPDLFASSSESRGRDSV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0106275 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0375700 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g16780 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0375700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0158300 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0171300 | SBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
