Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_07G0164000 | OGI:07004740 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr07:9666477-9668014 | ||||||||
| Gene Symbol | RLCK226, OsRLCK226, RLCK237, OsRLCK237 | ||||||||||
| DNA seq | TCATTTCACTGTCAAGAAGGTGACCACATTGCTCGCCTTAATATCTCGGTGGATGACCACTTTTTCCCACTCCTCGTGAAGGTGAAGTAAGCCTGATGCAACACCTTTGATGATGTGGATCCTCTTAACCCAATCCAAACTGCATTGCCCCTCTTCATCATGCAAATACCTGTCGAGGCTTCCATTGGACATGTAATCGTACACCAGGAGAAGTTCACCACTGCGTCGACAATAGCCAAGTAGTTGCACAAGCTAGGTTGCGGTGTTGGAGGCAACCAAGGCTGACTATCTCGGTGATAAATTGCTTCATACCCTGCCTTGATCCGTGTGACACCCTCTTCACAGCAATTTCCGATTTAGACGTGGGAAGTACCCCTCTGTATACGCTCCCGAACCCCCCTATGCTAGTATGCAGCTGTTTTTGAATCCTTCCGTGGCATGAAACAAATCGTTGTACAAGACCCTGTGCGGGCCAAACTCAATCTCCCAATCTTCCAGCAACTCGGAGTACCTCCGATGCCTCCGGACGAGCATGAAAACGGCTGCCCCCACAGGGAGTAGGAAAGCAGCAGTTGATAACGGTAGGGTGATCTGCAAAATCCTAGACCGGTCCTTGCTGACAGTTCGCGGCAGCTTCGGAAGCTTGGTGATGTCAATGGCGGGAGCGGGACGGCCCAACCCGAAGCTCCAGCCGAGCACATAGTGCCGTGATCTCAGCGTGCCTCCTGTCGCGGCAGAGAAACCGATGTACGCGACATCCTTGAGCAGCTTTGAGAGGTTGTACCTCGCTGAGACCAATGGCCTCTTGGGTTTGGCGACGGCGAGGGGGGCCATGGTCACGTCGATCCGCGTTGTCTCTCTGTCGTAGTCCACCCACACCTGCATGGCCTTTCCACTGATCAAGGTCAAGTTGCGAAAGCCATTGTTGTTGTCGTCGTCGTTGTAGTATCCGGCAGAGTAGGAGCGCAGAGAGTGGAGGCTGTTGATGTCGATTCCAACATGGCTGTCGTTAATGTCGCGGAACTCGTCGTTCTGCATGGTGTCGAGCTCGACGGCGAGCAGGCGATTGCCCGTGTCGCCGTCGCTGGTGACGTTGAGGAGGCCCAGGTACCCGCTGGGCAGCGCGCTGGAGAAGTCCCGGCTGGCGGCCACGACGAACGCCATGCCATGGGCGCTCAGGCCGACATGGTCGGACATGACGCCGAACACGAAGGAAGTGGAGAGAAGGACTCCTCCGCCGTCGTCGTCGTCGCGTTGGGGCCGGCGGCTCCACGGAGGGGCACCGGCACCGGGTAGAAGGCGTGGCCTTTGCGCTGCAGCGTGCCGTTGGTCAGCTCGAGCATGCCTCCTGCCGTCACCGCTGCCACGCCGTCGAGGGTGAGGTTGGCGCCGGTGAAGCCAGAGTAGATGAACTGGACATCGCCGGCGCACCTCGTGGTGAGGCTCAGGCCAAGGCAGAGGAGGAAGAACAGGTGTACGAGGAAAGGTAGATGCTTCATGGTAATGGTAGTAACTCTCGGTTCGTGCCCTCTGGCCAT
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| CDS seq | ATGGCCAGAGGGCACGAACCGAGAGTTACTACCATTACCATGAAGCATCTACCTTTCCTCGTACACCTGTTCTTCCTCCTCTGCCTTGGCCTGAGCCTCACCACGAGGTGCGCCGGCGATGTCCAGTTCATCTACTCTGGCTTCACCGGCGCCAACCTCACCCTCGACGGCGTGGCAGCGGTGACGGCAGGAGGCATGCTCGAGCTGACCAACGGCACGCTGCAGCGCAAAGGCCACGCCTTCTACCCGGTGCCGGTGCCCCTCCGTGGAGCCGCCGGCCCCAACGCGACGACGACGACGGCGGAGGAGTCCTTCTCTCCACTTCCTTCCCGGGACTTCTCCAGCGCGCTGCCCAGCGGGTACCTGGGCCTCCTCAACGTCACCAGCGACGGCGACACGGGCAATCGCCTGCTCGCCGTCGAGCTCGACACCATGCAGAACGACGAGTTCCGCGACATTAACGACAGCCATGTTGGAATCGACATCAACAGCCTCCACTCTCTGCGCTCCTACTCTGCCGGATACTACAACGACGACGACAACAACAATGGCTTTCGCAACTTGACCTTGATCAGTGGAAAGGCCATGCAGGTGTGGGTGGACTACGACAGAGAGACAACGCGGATCGACGTGACCATGGCCCCCCTCGCCGTCGCCAAACCCAAGAGGCCATTGGTCTCAGCGAGGTACAACCTCTCAAAGCTGCTCAAGGATGTCGCGTACATCGGTTTCTCTGCCGCGACAGGAGGCACGCTGAGATCACGGCACTATGTGCTCGGCTGGAGCTTCGGGTTGGGCCGTCCCGCTCCCGCCATTGACATCACCAAGCTTCCGAAGCTGCCGCGAACTGTCAGCAAGGACCGGTCTAGGATTTTGCAGATCACCCTACCGTTATCAACTGCTGCTTTCCTACTCCCTGTGGGGGCAGCCGTTTTCATGCTCGTCCGGAGGCATCGGAGTGGTGAACTTCTCCTGGTGTACGATTACATGTCCAATGGAAGCCTCGACAGGTATTTGCATGATGAAGAGGGGCAATGCAGTTTGGATTGGGTTAAGAGGATCCACATCATCAAAGGTGTTGCATCAGGCTTACTTCACCTTCACGAGGAGTGGGAAAAAGTGGTCATCCACCGAGATATTAAGGCGAGCAATGTGGTCACCTTCTTGACAGTGAAATGA
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| Protein seq | MARGHEPRVTTITMKHLPFLVHLFFLLCLGLSLTTRCAGDVQFIYSGFTGANLTLDGVAAVTAGGMLELTNGTLQRKGHAFYPVPVPLRGAAGPNATTTTAEESFSPLPSRDFSSALPSGYLGLLNVTSDGDTGNRLLAVELDTMQNDEFRDINDSHVGIDINSLHSLRSYSAGYYNDDDNNNGFRNLTLISGKAMQVWVDYDRETTRIDVTMAPLAVAKPKRPLVSARYNLSKLLKDVAYIGFSAATGGTLRSRHYVLGWSFGLGRPAPAIDITKLPKLPRTVSKDRSRILQITLPLSTAAFLLPVGAAVFMLVRRHRSGELLLVYDYMSNGSLDRYLHDEEGQCSLDWVKRIHIIKGVASGLLHLHEEWEKVVIHRDIKASNVVTFLTVK |
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| Function | L-type lectin-domain containing receptor kinase SIT2 [UniProtKB/Swiss-Prot:Q7XUN6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_07G0164000 | OsZS97_07T0164000-mRNA-1 | Chr07 | 9666477 | 9668014 | - | makerRMon | ||
| CDS seq | ATGGCCAGAGGGCACGAACCGAGAGTTACTACCATTACCATGAAGCATCTACCTTTCCTCGTACACCTGTTCTTCCTCCTCTGCCTTGGCCTGAGCCTCACCACGAGGTGCGCCGGCGATGTCCAGTTCATCTACTCTGGCTTCACCGGCGCCAACCTCACCCTCGACGGCGTGGCAGCGGTGACGGCAGGAGGCATGCTCGAGCTGACCAACGGCACGCTGCAGCGCAAAGGCCACGCCTTCTACCCGGTGCCGGTGCCCCTCCGTGGAGCCGCCGGCCCCAACGCGACGACGACGACGGCGGAGGAGTCCTTCTCTCCACTTCCTTCCCGGGACTTCTCCAGCGCGCTGCCCAGCGGGTACCTGGGCCTCCTCAACGTCACCAGCGACGGCGACACGGGCAATCGCCTGCTCGCCGTCGAGCTCGACACCATGCAGAACGACGAGTTCCGCGACATTAACGACAGCCATGTTGGAATCGACATCAACAGCCTCCACTCTCTGCGCTCCTACTCTGCCGGATACTACAACGACGACGACAACAACAATGGCTTTCGCAACTTGACCTTGATCAGTGGAAAGGCCATGCAGGTGTGGGTGGACTACGACAGAGAGACAACGCGGATCGACGTGACCATGGCCCCCCTCGCCGTCGCCAAACCCAAGAGGCCATTGGTCTCAGCGAGGTACAACCTCTCAAAGCTGCTCAAGGATGTCGCGTACATCGGTTTCTCTGCCGCGACAGGAGGCACGCTGAGATCACGGCACTATGTGCTCGGCTGGAGCTTCGGGTTGGGCCGTCCCGCTCCCGCCATTGACATCACCAAGCTTCCGAAGCTGCCGCGAACTGTCAGCAAGGACCGGTCTAGGATTTTGCAGATCACCCTACCGTTATCAACTGCTGCTTTCCTACTCCCTGTGGGGGCAGCCGTTTTCATGCTCGTCCGGAGGCATCGGAGTGGTGAACTTCTCCTGGTGTACGATTACATGTCCAATGGAAGCCTCGACAGGTATTTGCATGATGAAGAGGGGCAATGCAGTTTGGATTGGGTTAAGAGGATCCACATCATCAAAGGTGTTGCATCAGGCTTACTTCACCTTCACGAGGAGTGGGAAAAAGTGGTCATCCACCGAGATATTAAGGCGAGCAATGTGGTCACCTTCTTGACAGTGAAATGA
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| Protein seq | MARGHEPRVTTITMKHLPFLVHLFFLLCLGLSLTTRCAGDVQFIYSGFTGANLTLDGVAAVTAGGMLELTNGTLQRKGHAFYPVPVPLRGAAGPNATTTTAEESFSPLPSRDFSSALPSGYLGLLNVTSDGDTGNRLLAVELDTMQNDEFRDINDSHVGIDINSLHSLRSYSAGYYNDDDNNNGFRNLTLISGKAMQVWVDYDRETTRIDVTMAPLAVAKPKRPLVSARYNLSKLLKDVAYIGFSAATGGTLRSRHYVLGWSFGLGRPAPAIDITKLPKLPRTVSKDRSRILQITLPLSTAAFLLPVGAAVFMLVRRHRSGELLLVYDYMSNGSLDRYLHDEEGQCSLDWVKRIHIIKGVASGLLHLHEEWEKVVIHRDIKASNVVTFLTVK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.5145625 | 0.086262 | 0.1088235 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0262600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g15940 | RBH | 0.072192 | 0.514211 | 0.067165 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0262600 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0009630 | RBH | 0.401883 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0009770 | RBH | 0.000000 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0009640 | RBH | 0.200641 | 1.055119 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0009360 | RBH | 0.026981 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0009570 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0164500 | RBH | 0.968289 | 0.706925 | 0.392358 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0010030 | RBH | 0.051741 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0024400 | SBH | 1.236949 | 0.5785255 | 1.0078525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0009520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0009550 | RBH | 0.294778 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0009520 | RBH | 0.704473 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0009670 | RBH | 0.096304 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0009560 | RBH | 0.083380 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G009560 | RBH | 0.0 | 0.0 | 0.189250 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0001800 | SBH | 0.630874 | 5.298018 | 0.378688 |
