Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsZS97_07G0077400		OGI:07013120 \| 16/16			Zhenshan 97 \| ZS97RS3 \| HZAU			Chr07:4661083-4664250		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ATGGCGGCGGCGGCGGCGCCGCTCGCCGACGACGGCGACGGGATCGTTGACCGTGCCATGTGGCTCGCATGCGCCGCCCCGAACTCCGGCCGCCTCCCCGCCGTCGGCTCGATGGTCTTCTACTTCGTCGACGGCCACGCAGAGCAGTTTTGCCAGTTCCCCGCACCTCTCCTGGAGCAGCTCGCCGTCCCCGGCCCCCGCGTCTTCCTCTGTACGGTGGCCGCCGTCCGCCTCCGCGCCGACGCCCTCACCAATGAGGCCTACGCCGACATCACCCTCGACCCGGTCGCCGACCACGACGTCCCGCGCCTGCTCCCCGCTCCCGCTCCCGCCGCCGCCGCCGGTGGCCAGCAGCAGCAGTTGCGTTACTTCGTCAAGACGCTGATGTCTTCCGATGCCGAGTACCGAGACCGCTTCGCCGTCCCCATGGATGTTGCCAAGGACGTCTTCCCGCCGCTGGTCGACGCCAAAGCGGTCCAGCCCCTCATCGTCAAGGACCTTCAAGGATCTCCGATGACGTTCGACTACGGCAGGAACGGCAACAGGGTCACGCTCGCCAAGGTCTGGAAGAAATTTCGGGACGACATGGACTTCGTCGACGGAGACAGCGTCATCTTCATGCGTCGCCGCGACGACGACGAGCTGTACGTCGGGGTGCGGCGCCAGCGCACGCTCGACAAGCCACTCAGGACGCGCCGATCCAGGCCTCCGACACCGCTTCCGGTGGCCGTGCAGGAGGTGATAGCTGCAGCGGGTCGCGCGGCGGCCGGCGAGCAGTTCACTGCGACGTACCGCTCGCGGCAGGACGGCGACGAGTTCGTCGTGCCACGCGAGGTGGTGGAGGAGGGGCTCCGCCTCCGCTCCAGATTCACTCCCGAGATGGAGGTGGAGTTTGTTTGGGCCCTTGAGGATGGCGCGCCGCCCAGCGTCGGGCCACATGGCAAGATCACCGCCATCCACGACACTACATGGATGTGGCGATCAGTCGAGGTATCCTGACATCGATTAATTCCCCTGATTCTCATCCGCCATGCCAATGTTTTTGAAGTTTTCTTGTCTGATTTCGTTCATACTGCAGATTGGATGGACGGGAGGTTCAGAGATGAACAAGTACGCCAACTTCTGGCAAGTTCGATTGGTTGGTTCGGACGATTTTGCTTCTGCTGCTCCTCCCCCTCCTCTTTCTCCAAAGAGGCTGAAGAGTTCAGAGGTAGCTACGGCATCTACTTCTTCATCTCCCTGCAATGGATGTCTCACACATTGATCGACTTGTAAACGCACGCACACGTTGATCGATGCAACAATGTTCACTATTTGGTGAATTGATCGATGCAATGTTCAATCGCTTTTCAGGATCATCTGCCTCCACCAAAGGCGTCAGCGTCAGCGGCAGCGGCAAAGGCTTCTCCCTCTTCCTCCGCGCAGGCGCAGCAGTTCAGTATCACACGCGAGATGTGGCGGGCATGCGCCGCCCCCAAGTCTGGCCGCCTCCCCGCTGTTGGCTCATTTGTCTACTACTTCCCTGACGGCCACGCCCAGCAGTGCCCGTCGCGTCCACCAGAGCCCCTTCCAGGCAGGGTGTTTCTATGTAAAGTCACAGCTGTCCGCTTGGATGCAACAAGAAATGAGCTCTTTGCGACCATGTCCCTCATCCCAGTCGCCAGAGACCAAGCCATCCAGCCTCAGGCGCCCGCTGATCCAGGTCCAAGCTCCCCTCAAGTGAAGACTACTCTTGTTTCATTTGTGAAGCCTCTCACGTGCACCGATGCTGTCAAGAATCGGTATCGGTTCATAGTGCCCAAGAGAGAGGCCGCCATGGGTGTTCTACCCCAGCTCCAATTGAACGAACACGTGCCGCTCTATATCAAGGACATGCACGGAAAGGAGTGGGTGATTAATTATACATGGAAAGAGTACACCCACATGCTTTCCAGTGGCTGGATAAAATTCGCGAATGCCAACCGCCTTGTCACAGGTGACAACGTAGTGTTTATGCGCAGCATGGACAGTGGCGAGAGATACATGGGGCTGCGTCGCACCCTCAAGCCGGAGCCAGTGTCAGTTGACGAAGTGATTGAGGCCGTATGGAGGGCGGCGCGTCTCGAGCCGTTCGAGGTGGCCTACCTCTCGCGCCAGGACGGCGACGAGTTTGTTGTACCGTGTGGGATTGTACATAATGCGTGGTAAACTTCGTATGGGCTGTTGAGGAGGACAGGCTGCCGAATGTTGGGCCACAGGGAAAGGTCATTGCCATAGAGAACTATGCAACCTCAATCTGGAGGATGATTCAGGTATTACTGTATTACTCTGAATTTTGCTGCTTGTTTAATTGCAAATGCTTTCCTAAATTGTGCCTTGGATATTAGGCATCATGATGAGTTGTAACTTTGTACCAGATCAAGTGCTAGCATTTTGTGTCTCCACTGAAATTGTTGCATTGTCCATTTTTATCTGACACTGTGCTGCTCGCCAGGTTGAGTGGCCATCCTGTGCAGGAATGAACAGATATGTTAATTTTTGGCAAATTCGTGAAGTTCTTGGAGAGAGTTCCTTTGAGGCATCCACTTGCATTGTGAGAAGTCAAGATTACTCGCCGGCACCACAGAGGAATTTAGTTAATGCGCTTCAGCTTCCTGACGGAACAAAACAGCTTCAGCAAAACAAGAAGTCTGTTTCCTCGTCATCCACCTTCCGACTCTTTGGCAAAAAAATGACACCTGGCGTGCCACCAAGAAGAGACACCAGTGGTCTTTCTGGACAGGTGAGCTCAACATTGCAGTAACAAAAGTTTGCATTCTCCTATTGATGATCACGGAATTTGTAGGTATCATTATTCAGCCATTATCTTCCCCATGATGAGGACGATGGACAAGTTCCAACGATGAGGCAACGGCTAGAGACGCTGTTTCCTGATAACATCTGAGGCCAAGGACACCTACCTAACTAAAGATTTGCTCTGTCACTTGTGACTTTGCGAGACTGGGTCCGTCATGAATCATCTATGCCAGCTTTGGTCTGAATTTAGTTTGAAGGTTATTCTGAATAGTTTCAAAATTCGGGGAACAAGTTTGCAGTGTTAAATGTCCATTCTAAATCTGACGGAATTGGAAAATGGTGTATCTGCAATCTGATATCTGAAGAACGCGAACAGTTCAGATCGAGATGACA More
CDS seq		ATGGCGGCGGCGGCGGCGCCGCTCGCCGACGACGGCGACGGGATCGTTGACCGTGCCATGTGGCTCGCATGCGCCGCCCCGAACTCCGGCCGCCTCCCCGCCGTCGGCTCGATGGTCTTCTACTTCGTCGACGGCCACGCAGAGCAGTTTTGCCAGTTCCCCGCACCTCTCCTGGAGCAGCTCGCCGTCCCCGGCCCCCGCGTCTTCCTCTGTACGGTGGCCGCCGTCCGCCTCCGCGCCGACGCCCTCACCAATGAGGCCTACGCCGACATCACCCTCGACCCGGTCGCCGACCACGACGTCCCGCGCCTGCTCCCCGCTCCCGCTCCCGCCGCCGCCGCCGGTGGCCAGCAGCAGCAGTTGCGTTACTTCGTCAAGACGCTGATGTCTTCCGATGCCGAGTACCGAGACCGCTTCGCCGTCCCCATGGATGTTGCCAAGGACGTCTTCCCGCCGCTGGTCGACGCCAAAGCGGTCCAGCCCCTCATCGTCAAGGACCTTCAAGGATCTCCGATGACGTTCGACTACGGCAGGAACGGCAACAGGGTCACGCTCGCCAAGGTCTGGAAGAAATTTCGGGACGACATGGACTTCGTCGACGGAGACAGCGTCATCTTCATGCGTCGCCGCGACGACGACGAGCTGTACGTCGGGGTGCGGCGCCAGCGCACGCTCGACAAGCCACTCAGGACGCGCCGATCCAGGCCTCCGACACCGCTTCCGGTGGCCGTGCAGGAGGTGATAGCTGCAGCGGGTCGCGCGGCGGCCGGCGAGCAGTTCACTGCGACGTACCGCTCGCGGCAGGACGGCGACGAGTTCGTCGTGCCACGCGAGGTGGTGGAGGAGGGGCTCCGCCTCCGCTCCAGATTCACTCCCGAGATGGAGGTGGAGTTTGTTTGGGCCCTTGAGGATGGCGCGCCGCCCAGCGTCGGGCCACATGGCAAGATCACCGCCATCCACGACACTACATGGATGTGGCGATCAGTCGAGATTGGATGGACGGGAGGTTCAGAGATGAACAAGTACGCCAACTTCTGGCAAGTTCGATTGGTTGGTTCGGACGATTTTGCTTCTGCTGCTCCTCCCCCTCCTCTTTCTCCAAAGAGGCTGAAGAGTTCAGAGGATCATCTGCCTCCACCAAAGGCGTCAGCGTCAGCGGCAGCGGCAAAGGCTTCTCCCTCTTCCTCCGCGCAGGCGCAGCAGTTCAGTATCACACGCGAGATGTGGCGGGCATGCGCCGCCCCCAAGTCTGGCCGCCTCCCCGCTGTTGGCTCATTTGTCTACTACTTCCCTGACGGCCACGCCCAGCAGTGCCCGTCGCGTCCACCAGAGCCCCTTCCAGGCAGGGTGTTTCTATGTAAAGTCACAGCTGTCCGCTTGGATGCAACAAGAAATGAGCTCTTTGCGACCATGTCCCTCATCCCAGTCGCCAGAGACCAAGCCATCCAGCCTCAGGCGCCCGCTGATCCAGGTCCAAGCTCCCCTCAAGTGAAGACTACTCTTGTTTCATTTGTGAAGCCTCTCACGTGCACCGATGCTGTCAAGAATCGGTATCGGTTCATAGTGCCCAAGAGAGAGGCCGCCATGGGTGTTCTACCCCAGCTCCAATTGAACGAACACGTGCCGCTCTATATCAAGGACATGCACGGAAAGGAGTGGGTGATTAATTATACATGGAAAGAGTACACCCACATGCTTTCCAGTGGCTGGATAAAATTCGCGAATGCCAACCGCCTTGTCACAGGTGACAACGTAGTGTTTATGCGCAGCATGGACAGTGGCGAGAGATACATGGGGCTGCGTCGCACCCTCAAGCCGGAGCCAGTGTCAGTTGACGAAGTGATTGAGGCCGTATGGAGGGCGGCGCGTCTCGAGCCGTTCGAGGTGGCCTACCTCTCGCGCCAGGACGGCGACGAGTTTGTTGTACCGCTGCCGAATGTTGGGCCACAGGGAAAGGTCATTGCCATAGAGAACTATGCAACCTCAATCTGGAGGATGATTCAGGTTGAGTGGCCATCCTGTGCAGGAATGAACAGATATGTTAATTTTTGGCAAATTCGTGAAGTTCTTGGAGAGAGTTCCTTTGAGGCATCCACTTGCATTGTGAGAAGTCAAGATTACTCGCCGGCACCACAGAGGAATTTAGTTAATGCGCTTCAGCTTCCTGACGGAACAAAACAGCTTCAGCAAAACAAGAAGTCTGTTTCCTCGTCATCCACCTTCCGACTCTTTGGCAAAAAAATGACACCTGGCGTGCCACCAAGAAGAGACACCAGTGGTCTTTCTGGACAGGTATCATTATTCAGCCATTATCTTCCCCATGATGAGGACGATGGACAAGTTCCAACGATGAGGCAACGGCTAGAGACGCTGTTTCCTGATAACATCTGA More
Protein seq		MAAAAAPLADDGDGIVDRAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPGPRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDAKAVQPLIVKDLQGSPMTFDYGRNGNRVTLAKVWKKFRDDMDFVDGDSVIFMRRRDDDELYVGVRRQRTLDKPLRTRRSRPPTPLPVAVQEVIAAAGRAAAGEQFTATYRSRQDGDEFVVPREVVEEGLRLRSRFTPEMEVEFVWALEDGAPPSVGPHGKITAIHDTTWMWRSVEIGWTGGSEMNKYANFWQVRLVGSDDFASAAPPPPLSPKRLKSSEDHLPPPKASASAAAAKASPSSSAQAQQFSITREMWRACAAPKSGRLPAVGSFVYYFPDGHAQQCPSRPPEPLPGRVFLCKVTAVRLDATRNELFATMSLIPVARDQAIQPQAPADPGPSSPQVKTTLVSFVKPLTCTDAVKNRYRFIVPKREAAMGVLPQLQLNEHVPLYIKDMHGKEWVINYTWKEYTHMLSSGWIKFANANRLVTGDNVVFMRSMDSGERYMGLRRTLKPEPVSVDEVIEAVWRAARLEPFEVAYLSRQDGDEFVVPLPNVGPQGKVIAIENYATSIWRMIQVEWPSCAGMNRYVNFWQIREVLGESSFEASTCIVRSQDYSPAPQRNLVNALQLPDGTKQLQQNKKSVSSSSTFRLFGKKMTPGVPPRRDTSGLSGQVSLFSHYLPHDEDDGQVPTMRQRLETLFPDNI
Function		B3 domain-containing protein Os07g0183300/Os07g0183600 [UniProtKB/Swiss-Prot:Q8H506]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsZS97_07G0077400	OsZS97_07T0077400.1	Chr07	4661083	4664250	+	makerRMon
CDS seq	ATGGCGGCGGCGGCGGCGCCGCTCGCCGACGACGGCGACGGGATCGTTGACCGTGCCATGTGGCTCGCATGCGCCGCCCCGAACTCCGGCCGCCTCCCCGCCGTCGGCTCGATGGTCTTCTACTTCGTCGACGGCCACGCAGAGCAGTTTTGCCAGTTCCCCGCACCTCTCCTGGAGCAGCTCGCCGTCCCCGGCCCCCGCGTCTTCCTCTGTACGGTGGCCGCCGTCCGCCTCCGCGCCGACGCCCTCACCAATGAGGCCTACGCCGACATCACCCTCGACCCGGTCGCCGACCACGACGTCCCGCGCCTGCTCCCCGCTCCCGCTCCCGCCGCCGCCGCCGGTGGCCAGCAGCAGCAGTTGCGTTACTTCGTCAAGACGCTGATGTCTTCCGATGCCGAGTACCGAGACCGCTTCGCCGTCCCCATGGATGTTGCCAAGGACGTCTTCCCGCCGCTGGTCGACGCCAAAGCGGTCCAGCCCCTCATCGTCAAGGACCTTCAAGGATCTCCGATGACGTTCGACTACGGCAGGAACGGCAACAGGGTCACGCTCGCCAAGGTCTGGAAGAAATTTCGGGACGACATGGACTTCGTCGACGGAGACAGCGTCATCTTCATGCGTCGCCGCGACGACGACGAGCTGTACGTCGGGGTGCGGCGCCAGCGCACGCTCGACAAGCCACTCAGGACGCGCCGATCCAGGCCTCCGACACCGCTTCCGGTGGCCGTGCAGGAGGTGATAGCTGCAGCGGGTCGCGCGGCGGCCGGCGAGCAGTTCACTGCGACGTACCGCTCGCGGCAGGACGGCGACGAGTTCGTCGTGCCACGCGAGGTGGTGGAGGAGGGGCTCCGCCTCCGCTCCAGATTCACTCCCGAGATGGAGGTGGAGTTTGTTTGGGCCCTTGAGGATGGCGCGCCGCCCAGCGTCGGGCCACATGGCAAGATCACCGCCATCCACGACACTACATGGATGTGGCGATCAGTCGAGATTGGATGGACGGGAGGTTCAGAGATGAACAAGTACGCCAACTTCTGGCAAGTTCGATTGGTTGGTTCGGACGATTTTGCTTCTGCTGCTCCTCCCCCTCCTCTTTCTCCAAAGAGGCTGAAGAGTTCAGAGGATCATCTGCCTCCACCAAAGGCGTCAGCGTCAGCGGCAGCGGCAAAGGCTTCTCCCTCTTCCTCCGCGCAGGCGCAGCAGTTCAGTATCACACGCGAGATGTGGCGGGCATGCGCCGCCCCCAAGTCTGGCCGCCTCCCCGCTGTTGGCTCATTTGTCTACTACTTCCCTGACGGCCACGCCCAGCAGTGCCCGTCGCGTCCACCAGAGCCCCTTCCAGGCAGGGTGTTTCTATGTAAAGTCACAGCTGTCCGCTTGGATGCAACAAGAAATGAGCTCTTTGCGACCATGTCCCTCATCCCAGTCGCCAGAGACCAAGCCATCCAGCCTCAGGCGCCCGCTGATCCAGGTCCAAGCTCCCCTCAAGTGAAGACTACTCTTGTTTCATTTGTGAAGCCTCTCACGTGCACCGATGCTGTCAAGAATCGGTATCGGTTCATAGTGCCCAAGAGAGAGGCCGCCATGGGTGTTCTACCCCAGCTCCAATTGAACGAACACGTGCCGCTCTATATCAAGGACATGCACGGAAAGGAGTGGGTGATTAATTATACATGGAAAGAGTACACCCACATGCTTTCCAGTGGCTGGATAAAATTCGCGAATGCCAACCGCCTTGTCACAGGTGACAACGTAGTGTTTATGCGCAGCATGGACAGTGGCGAGAGATACATGGGGCTGCGTCGCACCCTCAAGCCGGAGCCAGTGTCAGTTGACGAAGTGATTGAGGCCGTATGGAGGGCGGCGCGTCTCGAGCCGTTCGAGGTGGCCTACCTCTCGCGCCAGGACGGCGACGAGTTTGTTGTACCGCTGCCGAATGTTGGGCCACAGGGAAAGGTCATTGCCATAGAGAACTATGCAACCTCAATCTGGAGGATGATTCAGGTTGAGTGGCCATCCTGTGCAGGAATGAACAGATATGTTAATTTTTGGCAAATTCGTGAAGTTCTTGGAGAGAGTTCCTTTGAGGCATCCACTTGCATTGTGAGAAGTCAAGATTACTCGCCGGCACCACAGAGGAATTTAGTTAATGCGCTTCAGCTTCCTGACGGAACAAAACAGCTTCAGCAAAACAAGAAGTCTGTTTCCTCGTCATCCACCTTCCGACTCTTTGGCAAAAAAATGACACCTGGCGTGCCACCAAGAAGAGACACCAGTGGTCTTTCTGGACAGGTATCATTATTCAGCCATTATCTTCCCCATGATGAGGACGATGGACAAGTTCCAACGATGAGGCAACGGCTAGAGACGCTGTTTCCTGATAACATCTGA More
Protein seq	MAAAAAPLADDGDGIVDRAMWLACAAPNSGRLPAVGSMVFYFVDGHAEQFCQFPAPLLEQLAVPGPRVFLCTVAAVRLRADALTNEAYADITLDPVADHDVPRLLPAPAPAAAAGGQQQQLRYFVKTLMSSDAEYRDRFAVPMDVAKDVFPPLVDAKAVQPLIVKDLQGSPMTFDYGRNGNRVTLAKVWKKFRDDMDFVDGDSVIFMRRRDDDELYVGVRRQRTLDKPLRTRRSRPPTPLPVAVQEVIAAAGRAAAGEQFTATYRSRQDGDEFVVPREVVEEGLRLRSRFTPEMEVEFVWALEDGAPPSVGPHGKITAIHDTTWMWRSVEIGWTGGSEMNKYANFWQVRLVGSDDFASAAPPPPLSPKRLKSSEDHLPPPKASASAAAAKASPSSSAQAQQFSITREMWRACAAPKSGRLPAVGSFVYYFPDGHAQQCPSRPPEPLPGRVFLCKVTAVRLDATRNELFATMSLIPVARDQAIQPQAPADPGPSSPQVKTTLVSFVKPLTCTDAVKNRYRFIVPKREAAMGVLPQLQLNEHVPLYIKDMHGKEWVINYTWKEYTHMLSSGWIKFANANRLVTGDNVVFMRSMDSGERYMGLRRTLKPEPVSVDEVIEAVWRAARLEPFEVAYLSRQDGDEFVVPLPNVGPQGKVIAIENYATSIWRMIQVEWPSCAGMNRYVNFWQIREVLGESSFEASTCIVRSQDYSPAPQRNLVNALQLPDGTKQLQQNKKSVSSSSTFRLFGKKMTPGVPPRRDTSGLSGQVSLFSHYLPHDEDDGQVPTMRQRLETLFPDNI More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.006824	0	0.038627

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_07g0183350	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os07g08540	RBH	0.0	0.0	0.0
Nipponbare \| IRGSP 1.0 \| RAP-db	Os07g0183350	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_07g0005250	RBH	0.0	0.0	0.0
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_07g0005210	RBH	0.0	0.0	0.0
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_07g0005120	RBH	0.0	0.0	0.0
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_07g0005050	RBH	0.0	0.0	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_07g0005170	RBH	0.0	0.0	0.0
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_07G0074400	RBH	0.005182	0	0.097153
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_07g0005690	RBH	0.0	0.0	0.0
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_07G0077300	RBH	0.011531	0	0
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_07g0005150	RBH	0.0	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_07g0005160	RBH	0.0	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_07g0005200	RBH	0.0	0.0	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_07g0005280	RBH	0.0	0.0	0.0
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_07g0005140	RBH	0.0	0.0	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_07G005330	RBH	0.0	0.0	0.210049
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_07g0005110	RBH	0.0	0.0	0.0

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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