Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_06G0383200 | OGI:06067290 | 1/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr06:26637435-26638997 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGAATTTATCAGGACGTGACAACCGGTGCTCTGACCCGCAGATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGAGCGCTCCCAGCTCCCCTAGATTGATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATGTCCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACAATGCGGTCGACCTGGTCCAGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGTAGACCATACCTCTTTCATGGCCGTTTGCTGTCTGGGGGCTCGATATCCTGGGTCCGTTCAGGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAGGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTCGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATAGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGAGACTCGTGGGTCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTTACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCAGATCAAGATCAGCTTCGCCGAGACGACCTCGACTATTTAGAGGAGCGAAGGCGGCGCGCGGCCCTCCGAGCTGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAACAAGCTCTCACCAATGTGGGAGAGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
||||||||||
| CDS seq | ATGAATTTATCAGGACGTGACAACCGGTGCTCTGACCCGCAGATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGAGCGCTCCCAGCTCCCCTAGATTGATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATGTCCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACAATGCGGTCGACCTGGTCCAGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAGGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTCGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATAGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGAGACTCGTGGGTCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTTACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCAGATCAAGATCAGCTTCGCCGAGACGACCTCGACTATTTAGAGGAGCGAAGGCGGCGCGCGGCCCTCCGAGCTGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAACAAGCTCTCACCAATGTGGGAGAGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
||||||||||
| Protein seq | MNLSGRDNRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPERPPRPVGVQASGPEGSAPSSPRLIAWITEIQAYLADKTLPEDREGSERVRRISKRYVLVEGTLYRRAANGVLLKCIPREQGVELLADVHEGECGAHSASRTLVGKAFRQGFYWPTALNNAVDLVQRCRACQFHARQTHQPAQALRAPGGFEYLYVAVDKFTKWPEAYPVIKIDRHSALKFIRGITARFGVPNRIITDNGTQFTSELFGDYCEDIGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWVEELPAVLWANRTTPSRATGETPFFLIYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLNKLSPMWESPYRVIGVPRPGSVRLATGDGTELPNPWNIEHLRRFYP |
||||||||||
| Function | Gag-Pol polyprotein (Fragment) [UniProtKB/Swiss-Prot:P03360] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_06G0383200 | OsZS97_06T0383200.1 | Chr06 | 26637435 | 26638997 | + | makerRMon | ||
| CDS seq | ATGAATTTATCAGGACGTGACAACCGGTGCTCTGACCCGCAGATGGACGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTCGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGCGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGAGCGCTCCCAGCTCCCCTAGATTGATTGCTTGGATCACTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCGGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCGCGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTCGCCGATGTCCATGAAGGCGAGTGCGGAGCCCACTCCGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACAATGCGGTCGACCTGGTCCAGCGGTGCAGGGCGTGCCAGTTCCACGCCAGGCAAACCCATCAGCCGGCCCAGGCCCTGCGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTGTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAGGCACTCCGCGCTTAAATTCATCAGGGGCATCACTGCTCGGTTCGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATAGGCATCAAGCTCTGCTTCGCCTCCCCCGCCCACCCCAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCGGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCACGGAGACTCGTGGGTCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCATCTACGGCGCGGAGGCGGTCCTCCCATCTGAGCTTACCCTGAGGTCCCCTCGGGTCACCATGTATTGCGAGGCAGATCAAGATCAGCTTCGCCGAGACGACCTCGACTATTTAGAGGAGCGAAGGCGGCGCGCGGCCCTCCGAGCTGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGCCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAACAAGCTCTCACCAATGTGGGAGAGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCGTGGAACATCGAACACCTTCGTCGCTTCTACCCCTAG
More
|
|||||||
| Protein seq | MNLSGRDNRCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDAPERPPRPVGVQASGPEGSAPSSPRLIAWITEIQAYLADKTLPEDREGSERVRRISKRYVLVEGTLYRRAANGVLLKCIPREQGVELLADVHEGECGAHSASRTLVGKAFRQGFYWPTALNNAVDLVQRCRACQFHARQTHQPAQALRAPGGFEYLYVAVDKFTKWPEAYPVIKIDRHSALKFIRGITARFGVPNRIITDNGTQFTSELFGDYCEDIGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWVEELPAVLWANRTTPSRATGETPFFLIYGAEAVLPSELTLRSPRVTMYCEADQDQLRRDDLDYLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLNKLSPMWESPYRVIGVPRPGSVRLATGDGTELPNPWNIEHLRRFYP
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g42590 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008501 | SBH | 0.367119 | 3.838377 | 2.068388 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0480500 | SBH | 0.009662 | 0.0089065 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0054300 | SBH | 0 | 0.0279495 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
