Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_05G0465600 | OGI:05078300 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr05:29619066-29622297 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGCGTGTCTAAAAATATTTAGGACGGAGGGAGTACAATTCAATAGGCTGAAAACACGGCCCATAATCGTGATTTGTGCCGGGATTAAGGCCCATCAAAACAAGGCCTGGTTGTTGTTTACTCCTACTAATTATCTTGCCGTGTCCAGGACAATAGAACCAACAGCAAGCAGGTTCTTCTATCCAACAAATTCATGGCAGCGCCTTTCCGGCTCGGCCGGTCCGTCTGGACTCGTGCCGTTCGCCCCGACCCACCACCGCTCTCGATGCTCGACCACCTGGCTCGCCTGAAGCAGCTAGCCCGATCGAGCAGGCTCGCGGACGCGCACCGCCTGTTCGATGGAATGCCACTCCGCGACGAGGTTGCCTACGCCACCCTCCTCGCCGGCCATGCCACCGCGGGGGACTTCCCCGGCGCGATGGCGCTCTTCTCCCGCCTCCGCGCCTCTTCTCCGCCGCTCGCGCCCGCGGACCCTTTCGTCCTCAGCCTCGTCTTCAAGTCCTGCGCCGCGGCGGCCGACGCGAGGTTCCTCCCGCACGCGGCGTCGCTGCACGCGTTCGCGGTCCGCTCCTCGGCCGTCTCCTCCGTCTTCGTCGCCACGGCCCTGGCCGACGTCTACGCCAAGGCTGGATGCCTCGGCCTCGCGCTTAAGGTGTTCGACGAAATGCCGCACAAGAACGTGGTCTCTTGGACCACGCTGGTTGCCTCGCTGACGAGGGCCGGCCGGCGCCACGAAGCGCTCCGCCGCTTCTCCGAGATGCGCGCCTCTGGCGTGCACTGCGATTCGTACGCCTACGCGGCCGCGCTCACAGCGTGCGCCGACGCCGGATTGCTGTCTCGCGGGCGCGAGGTGCACGCCTTCTGCGCCAAGCTCGGCCTTGACTCGACGCCCTACGTCGCCAACACGCTCGCCACTCTGTACGCGCGCTGCAGCGACGTCGACCGTGCGCTGGCTGCTGTCAGCCGCATGGGCACGCGCGACGTCGCCGCTTGGACGACGGTGATCTCTGCCTATGTGCAGACCGGCCGTGCAAAGGAGGCCATCGAGGCGTTTGTCCGAATGCTTCGTGAGGAATCATCAGTGGCTGCATCGCCGAATGAATACACATATGCTGCAGTTATTGCTGCGTGTGCAGATATTGCTTGGGTCTGTCTTGGGGAGCAGTTGCATGCTCAAGCTGCAAGGAAAGGCTTCGCCTGTGCCCGCTCGGTGGCCAATTCTCTTGTCACACTCTACACACGCGCCGCGGGCTGTCTGTCGGCTGCTGATGCTGTTTTCCGGGAGAGTGTAGTCAAGGATGTTGTCTCTTGGAGTGCCATCATATCAGGCTATGCACAGGAAGGCCTAGCTGAGGATGCATTCGCTCTGTTCAGAGAAATGAGGCATCACAGCGGCTGTCCTCGTCCGAACGAATTCACTCTTGCCAGTCTCCTAAGTGTTTGTGCAACTGCTGCGTCACTGGATGCTGGACGGCAACTCCACACACTTGCTGTTGCTGCTGGACTTGAACATCATGCAATGATCAGGAGTGCACTCATTGACATGTATGGAAAGAGTGGTAGCATGTTAGATGCTGATATAGTATTCTCCCATCGTGTGAAAGATGATGTTGTTTCGTGGACTGCAATGATCGTTGGATATGCTGAGCATGGGCACAGCAAGAAGGCACTTGAATTGTTCCAGGAAATGTGTCATGTTGGACTAAAGCCAGACCATGTCACATTCATAGGTGTGCTCAATGCTTGCTGTCATGCTGGGGAAGTCGAGCTTGGATTGAGATACCTCAATGAAATGAACCAAATTTATGGCCTGTATCCTGCCAAGGAGCACTATGGCTGTGTGGTGGATTTGTTGGGCAGAGCTGGTAGAATAAACGAAGCTGAGGAACTGATTGGAAAGATAGCTGCCAACGAAAGAGATGGTGTTGTTTGGACATCTTTGCTTAGGGCGTGTGCAGCCCGAGGAGAAGAGGAAACTGGAAAGAAAGCTGCAGAGAGGGCAATGGAGGCAGAACCATGGGGCGCAGGAGCACATGTGGCAATGGCGAATCTTTATGCCAGCAAGGGACAATGGCACGAGGCTGCACAAGAACGGCATATGATGAAGCAGAAAGGGGTTGTGAAAGGGGCAGGCTGGTCATCAATCACGGTTGGAGGGGAGGGCAGGAGAGTAGGGGTGTTTGTGGCCAGTGATCGCACACATCCCCAGGACAGTGCAATCTACAGGATGCTTGAGTTGATATATTTCGGAACTGGAATGGCTCGCTATGTACCTGATCAGTTGGATTTAGGATCTGAAGTGGATATGATGATTAGCAGTTAACTGAATAAGAAGCATTGGCTACGAATGAGTGCTATGATGAGCATTTGTTGCCAGTCAGTGCAGCTTAGGATGGTCTGGTCATCCAATCATTTCTGCTACTGCACTAAAGCACTGATTGAATAGTTCATATACCAATGCTAAGCTCGTTTGAGAGACAACTCTCGATAAGATGGGCACAACTATGAGGCAACCATGCTGCATGCTCTGATCCAGGCTTCAGCATTGCAGCTTGTAGTAGCAGACATGCCTTTTTTTTTTCTTTTAAGATAATGGATAGAAATCCAGCCTCTATATCCACAAGTGGATATACACAGCCAGTAGCAGACATGTCTTACAAGAATGGATTTCAATTCAATGAGATACCCACTGCAGGTTTCATATCCTAAATCGTAAATATGTCAACTTGATTCCTGCATCAGATGTACAGTGAAGAACTGAAGAAGTTCATTTCTTGCTCTTAACCAATACAAGTTGGAAGCATTTTATGCACACTGATTTGGAGCAGACAGGAATGTGGCAGACCGCGTGATGTTGATCTTATTCATCAGTTCTTTAGAAGGGAGCCGGACGGCAGTAGAGATATTCATAGCAGCATTGACGCTTTGGTGGCACCCAAGTTGCATCAATATGTCTGACATGCTGCTTGCTAATAACTTGATTCTTGACCAAGATATTATTGCTTGGTGTCTTGGTGATGATTCTTCTTTTATATACAATGTTAATGTCAATCCTTGTACTATAGTAGAGTTGTTAGTACCATATTCTTTCTGACAACTGCTCCTAGGATATTCTTCCTTTTGACATTTTGATTATGTAACGGTGAATCATGTCTATCAGTATGTAGACTTTTGACCTTCTTTGTACATATGCTCATTATTTACTATCTTTTCTGACAATTTGCACTTGCCTG
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| CDS seq | ATGGCAGCGCCTTTCCGGCTCGGCCGGTCCGTCTGGACTCGTGCCGTTCGCCCCGACCCACCACCGCTCTCGATGCTCGACCACCTGGCTCGCCTGAAGCAGCTAGCCCGATCGAGCAGGCTCGCGGACGCGCACCGCCTGTTCGATGGAATGCCACTCCGCGACGAGGTTGCCTACGCCACCCTCCTCGCCGGCCATGCCACCGCGGGGGACTTCCCCGGCGCGATGGCGCTCTTCTCCCGCCTCCGCGCCTCTTCTCCGCCGCTCGCGCCCGCGGACCCTTTCGTCCTCAGCCTCGTCTTCAAGTCCTGCGCCGCGGCGGCCGACGCGAGGTTCCTCCCGCACGCGGCGTCGCTGCACGCGTTCGCGGTCCGCTCCTCGGCCGTCTCCTCCGTCTTCGTCGCCACGGCCCTGGCCGACGTCTACGCCAAGGCTGGATGCCTCGGCCTCGCGCTTAAGGTGTTCGACGAAATGCCGCACAAGAACGTGGTCTCTTGGACCACGCTGGTTGCCTCGCTGACGAGGGCCGGCCGGCGCCACGAAGCGCTCCGCCGCTTCTCCGAGATGCGCGCCTCTGGCGTGCACTGCGATTCGTACGCCTACGCGGCCGCGCTCACAGCGTGCGCCGACGCCGGATTGCTGTCTCGCGGGCGCGAGGTGCACGCCTTCTGCGCCAAGCTCGGCCTTGACTCGACGCCCTACGTCGCCAACACGCTCGCCACTCTGTACGCGCGCTGCAGCGACGTCGACCGTGCGCTGGCTGCTGTCAGCCGCATGGGCACGCGCGACGTCGCCGCTTGGACGACGGTGATCTCTGCCTATGTGCAGACCGGCCGTGCAAAGGAGGCCATCGAGGCGTTTGTCCGAATGCTTCGTGAGGAATCATCAGTGGCTGCATCGCCGAATGAATACACATATGCTGCAGTTATTGCTGCGTGTGCAGATATTGCTTGGGTCTGTCTTGGGGAGCAGTTGCATGCTCAAGCTGCAAGGAAAGGCTTCGCCTGTGCCCGCTCGGTGGCCAATTCTCTTGTCACACTCTACACACGCGCCGCGGGCTGTCTGTCGGCTGCTGATGCTGTTTTCCGGGAGAGTGTAGTCAAGGATGTTGTCTCTTGGAGTGCCATCATATCAGGCTATGCACAGGAAGGCCTAGCTGAGGATGCATTCGCTCTGTTCAGAGAAATGAGGCATCACAGCGGCTGTCCTCGTCCGAACGAATTCACTCTTGCCAGTCTCCTAAGTGTTTGTGCAACTGCTGCGTCACTGGATGCTGGACGGCAACTCCACACACTTGCTGTTGCTGCTGGACTTGAACATCATGCAATGATCAGGAGTGCACTCATTGACATGTATGGAAAGAGTGGTAGCATGTTAGATGCTGATATAGTATTCTCCCATCGTGTGAAAGATGATGTTGTTTCGTGGACTGCAATGATCGTTGGATATGCTGAGCATGGGCACAGCAAGAAGGCACTTGAATTGTTCCAGGAAATGTGTCATGTTGGACTAAAGCCAGACCATGTCACATTCATAGGTGTGCTCAATGCTTGCTGTCATGCTGGGGAAGTCGAGCTTGGATTGAGATACCTCAATGAAATGAACCAAATTTATGGCCTGTATCCTGCCAAGGAGCACTATGGCTGTGTGGTGGATTTGTTGGGCAGAGCTGGTAGAATAAACGAAGCTGAGGAACTGATTGGAAAGATAGCTGCCAACGAAAGAGATGGTGTTGTTTGGACATCTTTGCTTAGGGCGTGTGCAGCCCGAGGAGAAGAGGAAACTGGAAAGAAAGCTGCAGAGAGGGCAATGGAGGCAGAACCATGGGGCGCAGGAGCACATGTGGCAATGGCGAATCTTTATGCCAGCAAGGGACAATGGCACGAGGCTGCACAAGAACGGCATATGATGAAGCAGAAAGGGGTTGTGAAAGGGGCAGGCTGGTCATCAATCACGGTTGGAGGGGAGGGCAGGAGAGTAGGGGTGTTTGTGGCCAGTGATCGCACACATCCCCAGGACAGTGCAATCTACAGGATGCTTGAGTTGATATATTTCGGAACTGGAATGGCTCGCTATGTACCTGATCAGTTGGATTTAGGATCTGAAGTGGATATGATGATTAGCAGTTAA
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| Protein seq | MAAPFRLGRSVWTRAVRPDPPPLSMLDHLARLKQLARSSRLADAHRLFDGMPLRDEVAYATLLAGHATAGDFPGAMALFSRLRASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVVKGAGWSSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGMARYVPDQLDLGSEVDMMISS |
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| Function | Putative pentatricopeptide repeat-containing protein At3g47840 [UniProtKB/Swiss-Prot:Q9STS9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_05G0465600 | OsZS97_05T0465600.1 | Chr05 | 29619066 | 29622297 | + | makerRMon | ||
| CDS seq | ATGGCAGCGCCTTTCCGGCTCGGCCGGTCCGTCTGGACTCGTGCCGTTCGCCCCGACCCACCACCGCTCTCGATGCTCGACCACCTGGCTCGCCTGAAGCAGCTAGCCCGATCGAGCAGGCTCGCGGACGCGCACCGCCTGTTCGATGGAATGCCACTCCGCGACGAGGTTGCCTACGCCACCCTCCTCGCCGGCCATGCCACCGCGGGGGACTTCCCCGGCGCGATGGCGCTCTTCTCCCGCCTCCGCGCCTCTTCTCCGCCGCTCGCGCCCGCGGACCCTTTCGTCCTCAGCCTCGTCTTCAAGTCCTGCGCCGCGGCGGCCGACGCGAGGTTCCTCCCGCACGCGGCGTCGCTGCACGCGTTCGCGGTCCGCTCCTCGGCCGTCTCCTCCGTCTTCGTCGCCACGGCCCTGGCCGACGTCTACGCCAAGGCTGGATGCCTCGGCCTCGCGCTTAAGGTGTTCGACGAAATGCCGCACAAGAACGTGGTCTCTTGGACCACGCTGGTTGCCTCGCTGACGAGGGCCGGCCGGCGCCACGAAGCGCTCCGCCGCTTCTCCGAGATGCGCGCCTCTGGCGTGCACTGCGATTCGTACGCCTACGCGGCCGCGCTCACAGCGTGCGCCGACGCCGGATTGCTGTCTCGCGGGCGCGAGGTGCACGCCTTCTGCGCCAAGCTCGGCCTTGACTCGACGCCCTACGTCGCCAACACGCTCGCCACTCTGTACGCGCGCTGCAGCGACGTCGACCGTGCGCTGGCTGCTGTCAGCCGCATGGGCACGCGCGACGTCGCCGCTTGGACGACGGTGATCTCTGCCTATGTGCAGACCGGCCGTGCAAAGGAGGCCATCGAGGCGTTTGTCCGAATGCTTCGTGAGGAATCATCAGTGGCTGCATCGCCGAATGAATACACATATGCTGCAGTTATTGCTGCGTGTGCAGATATTGCTTGGGTCTGTCTTGGGGAGCAGTTGCATGCTCAAGCTGCAAGGAAAGGCTTCGCCTGTGCCCGCTCGGTGGCCAATTCTCTTGTCACACTCTACACACGCGCCGCGGGCTGTCTGTCGGCTGCTGATGCTGTTTTCCGGGAGAGTGTAGTCAAGGATGTTGTCTCTTGGAGTGCCATCATATCAGGCTATGCACAGGAAGGCCTAGCTGAGGATGCATTCGCTCTGTTCAGAGAAATGAGGCATCACAGCGGCTGTCCTCGTCCGAACGAATTCACTCTTGCCAGTCTCCTAAGTGTTTGTGCAACTGCTGCGTCACTGGATGCTGGACGGCAACTCCACACACTTGCTGTTGCTGCTGGACTTGAACATCATGCAATGATCAGGAGTGCACTCATTGACATGTATGGAAAGAGTGGTAGCATGTTAGATGCTGATATAGTATTCTCCCATCGTGTGAAAGATGATGTTGTTTCGTGGACTGCAATGATCGTTGGATATGCTGAGCATGGGCACAGCAAGAAGGCACTTGAATTGTTCCAGGAAATGTGTCATGTTGGACTAAAGCCAGACCATGTCACATTCATAGGTGTGCTCAATGCTTGCTGTCATGCTGGGGAAGTCGAGCTTGGATTGAGATACCTCAATGAAATGAACCAAATTTATGGCCTGTATCCTGCCAAGGAGCACTATGGCTGTGTGGTGGATTTGTTGGGCAGAGCTGGTAGAATAAACGAAGCTGAGGAACTGATTGGAAAGATAGCTGCCAACGAAAGAGATGGTGTTGTTTGGACATCTTTGCTTAGGGCGTGTGCAGCCCGAGGAGAAGAGGAAACTGGAAAGAAAGCTGCAGAGAGGGCAATGGAGGCAGAACCATGGGGCGCAGGAGCACATGTGGCAATGGCGAATCTTTATGCCAGCAAGGGACAATGGCACGAGGCTGCACAAGAACGGCATATGATGAAGCAGAAAGGGGTTGTGAAAGGGGCAGGCTGGTCATCAATCACGGTTGGAGGGGAGGGCAGGAGAGTAGGGGTGTTTGTGGCCAGTGATCGCACACATCCCCAGGACAGTGCAATCTACAGGATGCTTGAGTTGATATATTTCGGAACTGGAATGGCTCGCTATGTACCTGATCAGTTGGATTTAGGATCTGAAGTGGATATGATGATTAGCAGTTAA
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| Protein seq | MAAPFRLGRSVWTRAVRPDPPPLSMLDHLARLKQLARSSRLADAHRLFDGMPLRDEVAYATLLAGHATAGDFPGAMALFSRLRASSPPLAPADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAARKGFACARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDAFALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAGRQLHTLAVAAGLEHHAMIRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQWHEAAQERHMMKQKGVVKGAGWSSITVGGEGRRVGVFVASDRTHPQDSAIYRMLELIYFGTGMARYVPDQLDLGSEVDMMISS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.8386505 | 0.6381545 | 3.5837235 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0581300 | RBH | 0.685451 | 0.029582 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50460 | RBH | 0.518286 | 0.022246 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0581300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0028360 | RBH | 0.000000 | 0.000000 | 0.231801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0028160 | RBH | 0.000000 | 0.0 | 0.351560 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0028170 | RBH | 0.066305 | 0.000000 | 0.554932 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0028210 | RBH | 0.0 | 0.004589 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0028100 | RBH | 1.147845 | 0.252419 | 0.558706 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_05G0452100 | RBH | 0.88981 | 1.124769 | 0.3620315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0027820 | RBH | 0.000000 | 0.067764 | 0.155687 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0027940 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0027820 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0028060 | RBH | 0.0 | 2.667623 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0028080 | RBH | 0.088837 | 0.091677 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0028110 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G027610 | RBH | 0.000000 | 0.0 | 0.149913 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0028090 | RBH | 0.0 | 0.0 | 0.000000 |
