Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_04G0479900 | OGI:04089390 | 8/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr04:31802539-31805189 | ||||||||
| Gene Symbol | PTR, PTR5, OsPTR5, OsNPF7.4, NPF7.4 | ||||||||||
| DNA seq | ATCTCTCGTGCTCAGCTCGCAGCCAAAAACCCCAAGGCGCTCTCACGACGGCAGGAGCTAGCTTAGCTGCAGAAAAAGCAGGTGACGTTGAATTCTGATTTCTGAACGAGTTGCAGCAGCATAGCGACAATGGACGCCGGCGACGCCATGGAGAGAGGCCAGCAGCGGCTGCCAGAGGTAAGCATATGCACAACTTCACAACTATCTCGTTCTCCTCCTCTCACCGGTTTCGCTCATCATGAATTGATCTTTCTTAGTACTCCAGTTTGCAACTTGGAAACAAGCGATGGCAGTGAGAATGCACGCATATGGATCATAACTATAGCATAGTAATTTTCAGGCATGCTGTTATTGGTTTCACCTTCTTTAAATTCAGAGTTCAGATTGAAGAATGGGTTGTTATCAGGTTCACCAAAATGACAGAACAGAGGTGAATAGGTGAACGAAGGAAACAGTCATGGTCTACATCTATGTGGTGCAGTTGCACCACTATTTGACCCTTTTCTACGCAAGATAGAGAATAATGTTACGGCTAAGACGAACCGTATCCAAACACACTATAGTCGTACGACGTATTGGCACGTTGCCACGAGGGTGAGTTGGTGGCAACACACTCATTGGTCAGGTCTCCATGGTTAAAACGAGCGTGAAAAATTCTGAAGTCAGAAAAAATTAATAGTGTGTGTTTAATACTAAGAAATTTTGTCAGACTTTTCACGCATAAGTTTAAAAAAATGTTGGTCAGAAAACTAAAGCAACAGAACACATACACACAAGTGCACCACAACCACCGTATACCTTTCGTATTCATCTGTACAAAGCTGCTTCCTTTATCCCTTTACGATTTTCAAGTACAATCGCTGACGTCTACAACAACGCCGCAAAAACTTTGATGGCTTGTTCAGATATACAAGAAATAAAAAAAAATGTAAACTGACATGTTCTCCCCAAACTTTGAACTTGATCTGCAGAGCTGGAACCCGAAACTCCAGGACGACGTCAGCCTGACGGTGCCACTCATCCAGGACAAGAAGAGCGGGAGCAAAGCGCCGGCGGTGGTGCTAGGATTCGAGTGCTTGGAGAGCACAGCGTTCAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACCGTCCTGCACGGCAGCAGCCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGCACGAGCTACCTCACGCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTTCGGCAACTACAACACCATCCTCGTCTCCCTCGTGTTCTACCTCCTGGGCATGGTGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCGCCGTGGCGGGCTCGACGTCGTGCCAGCAGCCTGTGTTTGGCGCGCAGACCATCGCCTTCGTGGGGCTCTACCTCGTGGCGTTCGGCAGCGGCGGCGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGAGCAGTTCGACGACGACAACGCGGTGGACCGGGAGCGGAAGATGTCCTTCTTCAGCTGGTTCTACATGTGCGTCGACTTCGGGATGATCGTGTCGGGCCTATTCATCGTGTGGATCCAGCAGAACGTGAGCTGGGGACTCGGCTTCGGCATCGCCACGGTTTGCGTCGCGATCGCGTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCAGCATGCCCACCGGCACGCCGCTCAAGAGCCTCGCCCAGGTGGTGGTCGCCGCGTGCCGGAAGGTCAGCCTCCGTGTCCCCGCCGACGCCGCCCTCCTCTACGAGGTCCATGACAAGATCGATCAGCCCAAGATCACGCACACCGACGAGTTCAGCTTTCTTGACAAGGCGGCGGTGATCGTGCAGTCCGACCTGGAAGAGGACTCGAACGACGCCTCGGCGGCGGCCGCGGGCTCGTGGAGGCTATGCACGGTGACGCAGGTGGAGGAGCTCAAGATCCTGATGCGGCTTCTGCCGATATGGGCGACGAGCATCGTGCTGTCGGCGGCGTACGCGCAGCTGAACACCACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCCGCCGCGTCGATGGTGTCCTTCGAGGTGTTCTGCGTCCTGGCATGGGTGCTCGTCTACGGCTCGGTGATCGTGCCGCTCCTCAGGAGCTTCTCCCCGGCCAACGGCGAGCCGTCGCAGCTGCGGCGCATGGGCGCCGGCCGTCTGCTCATCGCGGTCGCCATGGCCATCGCCGCGCTGGTGGAGATGGTGCGCCTCGACGCGGCGGCGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCATGCTGGCCGGCGGTGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATCTGCACGTCGCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCCTTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGCCGGCCCGGGTGGATTTCGGACAACCTCAACGAGGGACACCTGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCGCGGAACTACAAGGTGAAGACGGTCGTGTCATGA
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| CDS seq | ATGGACGCCGGCGACGCCATGGAGAGAGGCCAGCAGCGGCTGCCAGAGAGCTGGAACCCGAAACTCCAGGACGACGTCAGCCTGACGGTGCCACTCATCCAGGACAAGAAGAGCGGGAGCAAAGCGCCGGCGGTGGTGCTAGGATTCGAGTGCTTGGAGAGCACAGCGTTCAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACCGTCCTGCACGGCAGCAGCCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGCACGAGCTACCTCACGCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTTCGGCAACTACAACACCATCCTCGTCTCCCTCGTGTTCTACCTCCTGGGCATGGTGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCGCCGTGGCGGGCTCGACGTCGTGCCAGCAGCCTGTGTTTGGCGCGCAGACCATCGCCTTCGTGGGGCTCTACCTCGTGGCGTTCGGCAGCGGCGGCGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGAGCAGTTCGACGACGACAACGCGGTGGACCGGGAGCGGAAGATGTCCTTCTTCAGCTGGTTCTACATGTGCGTCGACTTCGGGATGATCGTGTCGGGCCTATTCATCGTGTGGATCCAGCAGAACGTGAGCTGGGGACTCGGCTTCGGCATCGCCACGGTTTGCGTCGCGATCGCGTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCAGCATGCCCACCGGCACGCCGCTCAAGAGCCTCGCCCAGGTGGTGGTCGCCGCGTGCCGGAAGGTCAGCCTCCGTGTCCCCGCCGACGCCGCCCTCCTCTACGAGGTCCATGACAAGATCGATCAGCCCAAGATCACGCACACCGACGAGTTCAGCTTTCTTGACAAGGCGGCGGTGATCGTGCAGTCCGACCTGGAAGAGGACTCGAACGACGCCTCGGCGGCGGCCGCGGGCTCGTGGAGGCTATGCACGGTGACGCAGGTGGAGGAGCTCAAGATCCTGATGCGGCTTCTGCCGATATGGGCGACGAGCATCGTGCTGTCGGCGGCGTACGCGCAGCTGAACACCACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCCGCCGCGTCGATGGTGTCCTTCGAGGTGTTCTGCGTCCTGGCATGGGTGCTCGTCTACGGCTCGGTGATCGTGCCGCTCCTCAGGAGCTTCTCCCCGGCCAACGGCGAGCCGTCGCAGCTGCGGCGCATGGGCGCCGGCCGTCTGCTCATCGCGGTCGCCATGGCCATCGCCGCGCTGGTGGAGATGGTGCGCCTCGACGCGGCGGCGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCATGCTGGCCGGCGGTGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATCTGCACGTCGCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCCTTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGCCGGCCCGGGTGGATTTCGGACAACCTCAACGAGGGACACCTGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCGCGGAACTACAAGGTGAAGACGGTCGTGTCATGA
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| Protein seq | MDAGDAMERGQQRLPESWNPKLQDDVSLTVPLIQDKKSGSKAPAVVLGFECLESTAFNGIATNLVVYLETVLHGSSLASASNVTTWFGTSYLTPVFGAIIADTFFGNYNTILVSLVFYLLGMVLVTFSAFLPTTALCAVAGSTSCQQPVFGAQTIAFVGLYLVAFGSGGVRAALLPFGAEQFDDDNAVDRERKMSFFSWFYMCVDFGMIVSGLFIVWIQQNVSWGLGFGIATVCVAIAFGGFVLATPMYKRSMPTGTPLKSLAQVVVAACRKVSLRVPADAALLYEVHDKIDQPKITHTDEFSFLDKAAVIVQSDLEEDSNDASAAAAGSWRLCTVTQVEELKILMRLLPIWATSIVLSAAYAQLNTTFVQQGAAMNMRIMSFTIPAASMVSFEVFCVLAWVLVYGSVIVPLLRSFSPANGEPSQLRRMGAGRLLIAVAMAIAALVEMVRLDAAARGESLSIAWQMPQYFMLAGGEVFCYIAQLEFFYSEAPESMKSICTSLALLTVALGSYMSSFIYAVVNAFTAVDGRPGWISDNLNEGHLDYFFWVMAALCTLNFVVYSAFARNYKVKTVVS |
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| Function | Protein NRT1/ PTR FAMILY 8.3 [UniProtKB/Swiss-Prot:P46032] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0479900 | OsZS97_04T0479900.1 | Chr04 | 31802539 | 31805189 | + | makerRMon | ||
| CDS seq | ATGGACGCCGGCGACGCCATGGAGAGAGGCCAGCAGCGGCTGCCAGAGAGCTGGAACCCGAAACTCCAGGACGACGTCAGCCTGACGGTGCCACTCATCCAGGACAAGAAGAGCGGGAGCAAAGCGCCGGCGGTGGTGCTAGGATTCGAGTGCTTGGAGAGCACAGCGTTCAACGGCATTGCCACGAACCTGGTGGTGTACCTGGAGACCGTCCTGCACGGCAGCAGCCTCGCGAGCGCGTCCAATGTCACGACGTGGTTCGGCACGAGCTACCTCACGCCGGTGTTCGGCGCCATCATCGCCGACACGTTCTTCGGCAACTACAACACCATCCTCGTCTCCCTCGTGTTCTACCTCCTGGGCATGGTGCTGGTCACCTTCTCGGCGTTCCTGCCGACCACCGCGCTGTGCGCCGTGGCGGGCTCGACGTCGTGCCAGCAGCCTGTGTTTGGCGCGCAGACCATCGCCTTCGTGGGGCTCTACCTCGTGGCGTTCGGCAGCGGCGGCGTGCGCGCGGCGCTGCTGCCGTTCGGCGCGGAGCAGTTCGACGACGACAACGCGGTGGACCGGGAGCGGAAGATGTCCTTCTTCAGCTGGTTCTACATGTGCGTCGACTTCGGGATGATCGTGTCGGGCCTATTCATCGTGTGGATCCAGCAGAACGTGAGCTGGGGACTCGGCTTCGGCATCGCCACGGTTTGCGTCGCGATCGCGTTCGGCGGCTTCGTGCTCGCCACGCCCATGTACAAGCGCAGCATGCCCACCGGCACGCCGCTCAAGAGCCTCGCCCAGGTGGTGGTCGCCGCGTGCCGGAAGGTCAGCCTCCGTGTCCCCGCCGACGCCGCCCTCCTCTACGAGGTCCATGACAAGATCGATCAGCCCAAGATCACGCACACCGACGAGTTCAGCTTTCTTGACAAGGCGGCGGTGATCGTGCAGTCCGACCTGGAAGAGGACTCGAACGACGCCTCGGCGGCGGCCGCGGGCTCGTGGAGGCTATGCACGGTGACGCAGGTGGAGGAGCTCAAGATCCTGATGCGGCTTCTGCCGATATGGGCGACGAGCATCGTGCTGTCGGCGGCGTACGCGCAGCTGAACACCACGTTCGTGCAGCAGGGCGCCGCGATGAACATGCGGATCATGTCGTTCACCATCCCCGCCGCGTCGATGGTGTCCTTCGAGGTGTTCTGCGTCCTGGCATGGGTGCTCGTCTACGGCTCGGTGATCGTGCCGCTCCTCAGGAGCTTCTCCCCGGCCAACGGCGAGCCGTCGCAGCTGCGGCGCATGGGCGCCGGCCGTCTGCTCATCGCGGTCGCCATGGCCATCGCCGCGCTGGTGGAGATGGTGCGCCTCGACGCGGCGGCGCGCGGCGAGTCCCTGAGCATCGCGTGGCAGATGCCGCAGTACTTCATGCTGGCCGGCGGTGAGGTGTTCTGCTACATCGCGCAGCTGGAGTTCTTCTACAGCGAGGCGCCGGAGTCCATGAAGAGCATCTGCACGTCGCTGGCGCTGCTCACCGTGGCGCTGGGAAGCTACATGAGCTCCTTCATCTACGCCGTCGTGAACGCGTTCACCGCCGTGGACGGCCGGCCCGGGTGGATTTCGGACAACCTCAACGAGGGACACCTGGACTACTTCTTCTGGGTCATGGCGGCGCTGTGCACGCTCAACTTCGTCGTGTACAGCGCGTTCGCGCGGAACTACAAGGTGAAGACGGTCGTGTCATGA
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| Protein seq | MDAGDAMERGQQRLPESWNPKLQDDVSLTVPLIQDKKSGSKAPAVVLGFECLESTAFNGIATNLVVYLETVLHGSSLASASNVTTWFGTSYLTPVFGAIIADTFFGNYNTILVSLVFYLLGMVLVTFSAFLPTTALCAVAGSTSCQQPVFGAQTIAFVGLYLVAFGSGGVRAALLPFGAEQFDDDNAVDRERKMSFFSWFYMCVDFGMIVSGLFIVWIQQNVSWGLGFGIATVCVAIAFGGFVLATPMYKRSMPTGTPLKSLAQVVVAACRKVSLRVPADAALLYEVHDKIDQPKITHTDEFSFLDKAAVIVQSDLEEDSNDASAAAAGSWRLCTVTQVEELKILMRLLPIWATSIVLSAAYAQLNTTFVQQGAAMNMRIMSFTIPAASMVSFEVFCVLAWVLVYGSVIVPLLRSFSPANGEPSQLRRMGAGRLLIAVAMAIAALVEMVRLDAAARGESLSIAWQMPQYFMLAGGEVFCYIAQLEFFYSEAPESMKSICTSLALLTVALGSYMSSFIYAVVNAFTAVDGRPGWISDNLNEGHLDYFFWVMAALCTLNFVVYSAFARNYKVKTVVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.019374 | 13.6562455 | 0.0070065 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0597600 | RBH | 0.592788 | 1.076959 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g50940 | RBH | 0.384041 | 0.986216 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0597600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0025170 | RBH | 0.0 | 17.110708 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0025950 | SBH | 0.000000 | 1.362451 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0025670 | SBH | 0.0 | 7.350388 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0025400 | RBH | 0.0 | 0.368318 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0025640 | RBH | 0.479409 | 1.568140 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0476300 | SBH | 0.081145 | 36.26074 | 0.070428 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0024390 | SBH | 0.000000 | 0.084934 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0494800 | RBH | 0.2448145 | 17.0459365 | 0.062468 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024850 | RBH | 0.0 | 0.105780 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0024690 | SBH | 0.048293 | 0.799855 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0024780 | RBH | 0.0 | 1.666229 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0025210 | SBH | 0.204247 | 0.0 | 0.121900 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0025380 | SBH | 0.056205 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G024620 | SBH | 0.0 | 4.740535 | 0.066964 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0024510 | RBH | 0.0 | 3.526868 | 0.000000 |
