Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsZS97_04G0285700 OGI:04058510 | 2/16 Zhenshan 97 | ZS97RS3 | HZAU Chr04:19434727-19438072
Gene Symbol -
DNA seq

TTAAACTTTATAGTCATCACGGATAGCCGATCTTCTGACTCTTTCAGACCTTCTAGGGGCCTGCACATTTGGCACATCCTGTACCTGAGGCTCTTGATGAGTCTCCTGTACTGGCACATTATCTATTTGAGGCTGTTGTAGCTCCTCCTCTGGTGTGGCAACCATTTCTGTTGAATCCTGTATAACAGGTTCCTCACTCTCATTCATTGTTGCCACAGGAGGGGTAACAACAGGTGTTGGTACCTCAATGACAGGCATTGCAGGCACAACATCAGCAGGTAGAGAGAAGAAAGGTTCCTGAGTCGACGGAGCGGGTACAGACACCCGCCTCTCCTCAAGATCAATTTCTCGAACTACCGAGCTCCCCCTAATCATTTCGTCTTCCAAGAAGACGGCGTGTCTCGTTTCTACAAACTTTGTATAACTGTTTGGACAGTAGAAACGATAGCCTTTTGATCTTTCAGGATAGCCAATAAAATGGCAGCTGACTGTTTTGGGGTCCAACTTCCCAATATTTGGGTTAAATACTTTGGCCTCTGTAGGACTCCCCCACACACGGAGGTGAGTTAGCGAGGGTACTCTTCCTATCCATAGCTCATACGGTGTTTTGGGCACCGATTTGCTTGGAACTCTGTTGAGAATATGAATGGCGGTTTTTAACGCCTCCATCCATAAACCGAGTGGTAGTGTGGAGTAGCTCATTATGCTGCGCACCATATCCATAAGGGTACGGTTGCGCCTTTCAGCTACCCCATTCTGTTGAGGTTCGCCCGGTGTTGAATACTGGGCTACTATTCCATTCTCTAGCAAGAACCTTGCAAAAGGTCCAGGGACTTGCCCATAAGGCGTATGTCGACCATAGTACTCCCCCCCACGGTTAGATCTTACTACTTTAATCTTTATATCATGCTGATTTTCAACTTCAGCTTTGAATATCTTAAATTTATCCAGTGCTTCTGATCGCTCTTTAATTGGATAAATATAACCATAGCGGGAGTAATCATCTGTGAATGTTATGAACGAGTCATAGCCATCCACACTTTTCACAGGAAATGGACCACAAATATCTGTATGAATGATCTCTAAAATTCCTGCGCTTCGTTTTGCACCCTTTTTGATGCTCTTTACAAATTTTCCTTTAATGCATTCTATGCATTGTTCTGAGAACCCCAATGGAGGAAGAATTTCATTCTTAACTAGTCTCTCAATTCTCCCCCTCGAAATATGGCCCAAACGACAGTGCCATAATTTCGATGAGACATCGGGAGTTCACTTTCTTTTCTTGTTTTCTTTTGTCAACGAGGACACAACATTCACATTCTCAGAAAGAGATAACAAATAAAGCTCGTCTCGCAACACAGCAAGACCAATACATGCATTATTATGCCATAGTTCACATTTGCCACTTCCAAAGCGGCAATCATATCCATCAAAATCCAACTTTGATACACTTATTAAGTTTCTTTGCAAAGAAGGAACATAAAAGACATCTCGAAGTAAAAGTATGAAGCCATTCGCGAGCTCTAGAGGAAGATCTCCAACAGCTTCAACTTTTTCTTCAACTCCATTGGCAACTCTAATGGTGCTTTCTCTTCTTTGCGTAGTCCTCGTCGAACGGAATGCCTTTAAACAATTACAAGCATGAATAGTTGCTCCAGAATCAATCCACCATGTGGATCTAGAGTAACCAACATAATGAGATTCATTTACAAATGTAATAATGTTCTCACCTTTCTTTGCCATGATCATTTTCAAAAAGTCAGGACAATCTCTCTTGTAGTGTCCTGTCTTCTTGCAGTGGAGACATTGATCTTTCTCAACAGCGAACTGTTGTTGCTGAGGCAGATGCTGAGACTGTTTACCTTTTGAGGTGGGAGACTTGTGGTTTTTTTTCTTATCTTTAACATAGTTTATTGAACCACCATTTGATTCGTTGATTCTCTCCTCCTCTTGCACACAATTAGCAATGAGCTTCTCAAAGTTCCATTTCTCTGGACTTATGTTGTAGTTGACAATAAAATTGTCAAACTGCTTTGGCAATGAGGCCATAACCAGATGGACCAGAAAGTCATCTGTTATGCCCAAATCCATTGGCTTCAACTTGGAAGCCATGTTGCTTATTCTAAGTATGTGGTCTCTAACACCACCTCCATGGTACCTTTCTGTCACAAGCTGCTTGATCAGCTGTGTAGCATAAGTCTTTGAAGAGCCAGTAAACTGACTCTTTATTCTTTCAAGGTACTCTGAGACAGCGTCACACTCTGGGATCGAGCCCAATATGGTAGGCTCAATCGTATTCTTTACCACAGCCAAACATTTCTTGTTGGCTAAGGACCATTTCTTTTGTTCAATGTCATACGACATGACGAGAGGAGCATTGTCCCTCTGTCTCTTTTGCCAGTCAGCATCTGACTCATTTTCACCTCTGATAAGTTCAGCAAGTTCTATAGGACATGGGGTAGTCAACACCCAGTCCACCTCTCCCAAGATAAAAGCAAGGTCGAGTTTTCTTTTCCATTCTGCGTAGTTATCTCCTTTTAGGGTCGGAATATCTTTAATGCAACCCATCAAGGAGTAGCCACCTGAAATAATCATGTGCGGTGAGAACAAAATTAACATTAAAATAGTATGCATTAAGCCTACATCACCGTTGGGCAGAATTAGACATAACACATAGCCATAACTATAACATTGCAATTATCAACGTTGGTCAGAAAATTACAACATCATAGCACATAATTAATGTTCCTAAAATTAAATTCTCCCGTTGGTTCGAAATTTAATTTTAGAAACACTAATTTTCATCAATTTCATCTATTTGCAGCGGAAAAACTATATAAAATTTATATGAACAGTAGCAAAACACTGTAATTTACTCTCTGCAAAATTCTCCCGTTGGTTCAAATTTAAACAGAGGTAAAACATGCAAAAATCTATTCAAAATTCTATTGAAATTTGCATGAAAAATCGACAAAATAAATTGGAAAAAATGCTACTGTTCTCTTTTCTTTGTTTTCGGCCCCGAGGGACCTCAAACAGACTTTTCCCGGTCGGCCCGCGGCCTTTTGGCACGGGCGGGCGCCCCCCTTCCCCAGGCCGCAACCTGGGCCTGGGCCAGGAAAGCAGCCCCCCGCGCGCGCCCTCTTGGGCCGATTTCGGCCCGGCCGGCGTCGACCGTCCGATCAGCTAGGGTTTCGATCGGACGGCCGGGCGCCGAGATCGGAGGATCAAAACCCCCCTCTCCCGGCCGGCCGCCGAAAACCCTAGCTTCTCTTCTCTTCTCTCTCTCACGCGACCGCGTGGACGGCGTCGCCATCGCCGGCGACCTTCGCGCCCGCCGCGCCAT

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CDS seq

ATGGCGCGGCGGGCGCGAAGGTCGCCGGCGATGGCGACGCCGTCCACGCGGTCGCGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTGTTGACTACCCCATGTCCTATAGAACTTGCTGAACTTATCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACCATGGAGGTGGTGTTAGAGACCACATACTTAGAATAAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAACGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAAAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAGAGATTGTCCTGACTTTTTGAAAATGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAATGAATCTCATTATGTTGGTTACTCTAGATCCACATGGTGGATTGATTCTGGAGCAACTATTCATGCTTGTAATTGTTTAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAGAGTTGCCAATGGAGTTGAAGAAAAAGTTGAAGCTGTTGGAGATCTTCCTCTAGAGCTCGCGAATGGCTTCATACTTTTACTTCGAGATGTCTTTTATGTTCCTTCTTTGCAAAGAAACTTAATAAGTGTATCAAAGTTGGATTTTGATGGATATGATTGCCGCTTTGGAAGTGGCAAATGTGAACTATGGCATAATAATGCATGTATTGGTCTTGCTGTGTTGCGAGACGAGCTTTATTTGTTATCTCTTTCTGAGAATGTGAATGTTGTGTCCTCGTTGACAAAAGAAAACAAGAAAAGAAAGGGGAGAATTGAGAGACTAGTTAAGAATGAAATTCTTCCTCCATTGGGGTTCTCAGAACAATGCATAGAATGCATTAAAGGAAAATTTGTAAAGAGCATCAAAAAGGGTGCAAAACGAAGCGCAGGAATTTTAGAGATCATTCATACAGATATTTGTGGTCCATTTCCTGTGAAAAGTGTGGATGGCTATGACTCGTTCATAACATTCACAGATGATTACTCCCGCTATGGTTATATTTATCCAATTAAAGAGCGATCAGAAGCACTGGATAAATTTAAGATATTCAAAGCTGAAGTTGAAAATCAGCATGATATAAAGATTAAAGTAGTAAGATCTAACCGTGGGGGGGAGTACTATGGTCGACATACGCCTTATGGGCAAGTCCCTGGACCTTTTGCAAGGTTCTTGCTAGAGAATGGAATAGTAGCCCAGTATTCAACACCGGGCGAACCTCAACAGAATGGGGTAGCTGAAAGGCGCAACCGTACCCTTATGGATATGGTGCGCAGCATAATGAGCTACTCCACACTACCACTCGGTTTATGGATGGAGGCGTTAAAAACCGCCATTCATATTCTCAACAGAGTTCCAAGCAAATCGGTGCCCAAAACACCGTATGAGCTATGGATAGGAAGAGTACCCTCGCTAACTCACCTCCGTGTGTGGGGGAGTCCTACAGAGGCCAAAGTATTTAACCCAAATATTGGGAAGTTGGACCCCAAAACAGTCAGCTGCCATTTTATTGGCTATCCTGAAAGATCAAAAGGCTATCGTTTCTACTGTCCAAACAGTTATACAAAGTTTGTAGAAACGAGACACGCCGTCTTCTTGGAAGACGAAATGATTAGGGGGAGCTCGGTAGTTCGAGAAATTGATCTTGAGGAGAGGCGGGTGTCTGTACCCGCTCCGTCGACTCAGGAACCTTTCTTCTCTCTACCTGCTGATGTTGTGCCTGCAATGCCTGTCATTGAGGTACCAACACCTGTTGTTACCCCTCCTGTGGCAACAATGAATGAGAGTGAGGAACCTGTTATACAGGATTCAACAGAAATGGTTGCCACACCAGAGGAGGAGCTACAACAGCCTCAAATAGATAATGTGCCAGTACAGGAGACTCATCAAGAGCCTCAGGTACAGGATGTGCCAAATGTGCAGGCCCCTAGAAGGTCTGAAAGAGTCAGAAGATCGGCTATCCGTGATGACTATAAAGTTTAA

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Protein seq

MARRARRSPAMATPSTRSRGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIELAELIRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYHGGGVRDHILRISNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERINESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKRDCPDFLKMIMAKKGENIITFVNESHYVGYSRSTWWIDSGATIHACNCLKAFRSTRTTQRRESTIRVANGVEEKVEAVGDLPLELANGFILLLRDVFYVPSLQRNLISVSKLDFDGYDCRFGSGKCELWHNNACIGLAVLRDELYLLSLSENVNVVSSLTKENKKRKGRIERLVKNEILPPLGFSEQCIECIKGKFVKSIKKGAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSNRGGEYYGRHTPYGQVPGPFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSIMSYSTLPLGLWMEALKTAIHILNRVPSKSVPKTPYELWIGRVPSLTHLRVWGSPTEAKVFNPNIGKLDPKTVSCHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPSTQEPFFSLPADVVPAMPVIEVPTPVVTPPVATMNESEEPVIQDSTEMVATPEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKV

Function Retrovirus-related Pol polyprotein from transposon TNT 1-94 [UniProtKB/Swiss-Prot:P10978]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsZS97_04G0285700 OsZS97_04T0285700.1 Chr04 19434727 19438072 - makerRMon
CDS seq

ATGGCGCGGCGGGCGCGAAGGTCGCCGGCGATGGCGACGCCGTCCACGCGGTCGCGTGGCTACTCCTTGATGGGTTGCATTAAAGATATTCCGACCCTAAAAGGAGATAACTACGCAGAATGGAAAAGAAAACTCGACCTTGCTTTTATCTTGGGAGAGGTGGACTGGGTGTTGACTACCCCATGTCCTATAGAACTTGCTGAACTTATCAGAGGTGAAAATGAGTCAGATGCTGACTGGCAAAAGAGACAGAGGGACAATGCTCCTCTCGTCATGTCGTATGACATTGAACAAAAGAAATGGTCCTTAGCCAACAAGAAATGTTTGGCTGTGGTAAAGAATACGATTGAGCCTACCATATTGGGCTCGATCCCAGAGTGTGACGCTGTCTCAGAGTACCTTGAAAGAATAAAGAGTCAGTTTACTGGCTCTTCAAAGACTTATGCTACACAGCTGATCAAGCAGCTTGTGACAGAAAGGTACCATGGAGGTGGTGTTAGAGACCACATACTTAGAATAAGCAACATGGCTTCCAAGTTGAAGCCAATGGATTTGGGCATAACAGATGACTTTCTGGTCCATCTGGTTATGGCCTCATTGCCAAAGCAGTTTGACAATTTTATTGTCAACTACAACATAAGTCCAGAGAAATGGAACTTTGAGAAGCTCATTGCTAATTGTGTGCAAGAGGAGGAGAGAATCAACGAATCAAATGGTGGTTCAATAAACTATGTTAAAGATAAGAAAAAAAACCACAAGTCTCCCACCTCAAAAGGTAAACAGTCTCAGCATCTGCCTCAGCAACAACAGTTCGCTGTTGAGAAAGATCAATGTCTCCACTGCAAGAAGACAGGACACTACAAGAGAGATTGTCCTGACTTTTTGAAAATGATCATGGCAAAGAAAGGTGAGAACATTATTACATTTGTAAATGAATCTCATTATGTTGGTTACTCTAGATCCACATGGTGGATTGATTCTGGAGCAACTATTCATGCTTGTAATTGTTTAAAGGCATTCCGTTCGACGAGGACTACGCAAAGAAGAGAAAGCACCATTAGAGTTGCCAATGGAGTTGAAGAAAAAGTTGAAGCTGTTGGAGATCTTCCTCTAGAGCTCGCGAATGGCTTCATACTTTTACTTCGAGATGTCTTTTATGTTCCTTCTTTGCAAAGAAACTTAATAAGTGTATCAAAGTTGGATTTTGATGGATATGATTGCCGCTTTGGAAGTGGCAAATGTGAACTATGGCATAATAATGCATGTATTGGTCTTGCTGTGTTGCGAGACGAGCTTTATTTGTTATCTCTTTCTGAGAATGTGAATGTTGTGTCCTCGTTGACAAAAGAAAACAAGAAAAGAAAGGGGAGAATTGAGAGACTAGTTAAGAATGAAATTCTTCCTCCATTGGGGTTCTCAGAACAATGCATAGAATGCATTAAAGGAAAATTTGTAAAGAGCATCAAAAAGGGTGCAAAACGAAGCGCAGGAATTTTAGAGATCATTCATACAGATATTTGTGGTCCATTTCCTGTGAAAAGTGTGGATGGCTATGACTCGTTCATAACATTCACAGATGATTACTCCCGCTATGGTTATATTTATCCAATTAAAGAGCGATCAGAAGCACTGGATAAATTTAAGATATTCAAAGCTGAAGTTGAAAATCAGCATGATATAAAGATTAAAGTAGTAAGATCTAACCGTGGGGGGGAGTACTATGGTCGACATACGCCTTATGGGCAAGTCCCTGGACCTTTTGCAAGGTTCTTGCTAGAGAATGGAATAGTAGCCCAGTATTCAACACCGGGCGAACCTCAACAGAATGGGGTAGCTGAAAGGCGCAACCGTACCCTTATGGATATGGTGCGCAGCATAATGAGCTACTCCACACTACCACTCGGTTTATGGATGGAGGCGTTAAAAACCGCCATTCATATTCTCAACAGAGTTCCAAGCAAATCGGTGCCCAAAACACCGTATGAGCTATGGATAGGAAGAGTACCCTCGCTAACTCACCTCCGTGTGTGGGGGAGTCCTACAGAGGCCAAAGTATTTAACCCAAATATTGGGAAGTTGGACCCCAAAACAGTCAGCTGCCATTTTATTGGCTATCCTGAAAGATCAAAAGGCTATCGTTTCTACTGTCCAAACAGTTATACAAAGTTTGTAGAAACGAGACACGCCGTCTTCTTGGAAGACGAAATGATTAGGGGGAGCTCGGTAGTTCGAGAAATTGATCTTGAGGAGAGGCGGGTGTCTGTACCCGCTCCGTCGACTCAGGAACCTTTCTTCTCTCTACCTGCTGATGTTGTGCCTGCAATGCCTGTCATTGAGGTACCAACACCTGTTGTTACCCCTCCTGTGGCAACAATGAATGAGAGTGAGGAACCTGTTATACAGGATTCAACAGAAATGGTTGCCACACCAGAGGAGGAGCTACAACAGCCTCAAATAGATAATGTGCCAGTACAGGAGACTCATCAAGAGCCTCAGGTACAGGATGTGCCAAATGTGCAGGCCCCTAGAAGGTCTGAAAGAGTCAGAAGATCGGCTATCCGTGATGACTATAAAGTTTAA

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Protein seq

MARRARRSPAMATPSTRSRGYSLMGCIKDIPTLKGDNYAEWKRKLDLAFILGEVDWVLTTPCPIELAELIRGENESDADWQKRQRDNAPLVMSYDIEQKKWSLANKKCLAVVKNTIEPTILGSIPECDAVSEYLERIKSQFTGSSKTYATQLIKQLVTERYHGGGVRDHILRISNMASKLKPMDLGITDDFLVHLVMASLPKQFDNFIVNYNISPEKWNFEKLIANCVQEEERINESNGGSINYVKDKKKNHKSPTSKGKQSQHLPQQQQFAVEKDQCLHCKKTGHYKRDCPDFLKMIMAKKGENIITFVNESHYVGYSRSTWWIDSGATIHACNCLKAFRSTRTTQRRESTIRVANGVEEKVEAVGDLPLELANGFILLLRDVFYVPSLQRNLISVSKLDFDGYDCRFGSGKCELWHNNACIGLAVLRDELYLLSLSENVNVVSSLTKENKKRKGRIERLVKNEILPPLGFSEQCIECIKGKFVKSIKKGAKRSAGILEIIHTDICGPFPVKSVDGYDSFITFTDDYSRYGYIYPIKERSEALDKFKIFKAEVENQHDIKIKVVRSNRGGEYYGRHTPYGQVPGPFARFLLENGIVAQYSTPGEPQQNGVAERRNRTLMDMVRSIMSYSTLPLGLWMEALKTAIHILNRVPSKSVPKTPYELWIGRVPSLTHLRVWGSPTEAKVFNPNIGKLDPKTVSCHFIGYPERSKGYRFYCPNSYTKFVETRHAVFLEDEMIRGSSVVREIDLEERRVSVPAPSTQEPFFSLPADVVPAMPVIEVPTPVVTPPVATMNESEEPVIQDSTEMVATPEEELQQPQIDNVPVQETHQEPQVQDVPNVQAPRRSERVRRSAIRDDYKV

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.03151 0.5483625 0.2872625

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_04g0629600 RBH 0.412557 0.504873 2.110850
Nipponbare | IRGSP 1.0 | MSU LOC_Os04g30380 RBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os04g0629600 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) NA NA NA NA NA
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) NA NA NA NA NA
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_08G0222500 SBH 0 0.0175185 0.150866
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_08G0235000 RBH 0 0.01244 0
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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