Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_04G0152200 | OGI:04030490 | 16/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr04:9714863-9716268 | ||||||||
| Gene Symbol | OsCTR1 | ||||||||||
| DNA seq | CATTTTTCTGTCGGCGATTCATATCAGTCCATTCACAGGTTAATAATTTCTGACGGTAAAACCTATTTTCCTCTGTAGGTTTCATGCCTACAGGTAGCTGCTAAAGTCTGGTAGTGACGGTGAGTGGATGGCAGCGTGTTGGGTGAGGACTCACGACGTGGCAAGAAACACCTCCTGTTCAGATTTGTACGACCTTCTCTAGCATCTTCGAGCTTCCTTCCCTTGTCTCACTTTTCCCTTGTTTTATCTCCACATGGACAGACAACTCAACAGTGATGATGGTTCAACCAAGCAAACCAGAAAGAAATGCTGAACTGATAAACCAGACTAGTATCATGTGTGTGTATATCGCACGGTATAAAATAAAATTCGACAGATTAAAAGAAAAAAACTGTTAAAGGAAATCTAAAGAAACCGTTTTTATTATATATACCTACTTATTTTTTTTTCAGTTCTCTTGAATAGGTAATCAACGCCCAATAGAAAACTTGCAAAAGAAAAAAAATGCTGACGATGTGAGCGTAAGCGTACATACAAACGCTACAAGCGTGAAATCGTCATGTTAATTTGCATAATATAAGAAAAAAAAACAAACCGGTTTCCAGGCAGGAAACAAACAAATAAAAAGCATTGCGCTTAGACATCAGAGATATACATGTCAGAATCCAGGGACGAGCATGGCAGAGAACCAGATCACCATGTCTTCAGCGAGCGGCGGCTCGCCGGTGTGCTTCGCTGCCACCCCTGGCTTGTTACCGTCGACGACGACGTAAACCCGGCAAAGCGGGCACGTCCGCCTGCATGAGAGGAGCCACCGGTCGACGCAGTCCCGGTGGAACGCATGCCGGCAGGGCAGACGCCTCGTCGCCTCGCCGACGCGGATCCTGGAGAGACAGACGGAGCACTCCGTCAGGCCACCGCTGCCGCCGTCCTCGCTGGCTTGCCTCGCCTCCGACGGAATCTTGATGCACAGCATCTTGGAGATGTAGGAGAGGAGGTAGCTCATTGTGCAAACACATGCACCGAGCTGCAACAAAGGGCTACGGCCAGTGAGTAGTTGAGGGATATGTAATAATATCGATCGATCGATCGCTGTGGGTGTCGATCTCTTTTGGTCAGGGGTCAGGTGGTTTAGTTGCTTTGTTTGTACGAGTGGTTGCTACTATCGGAGTGTGTTGAGAGATCCCCATTGGAAGGTGCACCTACAAATAACTTTCGTTAGCACCAAGCTTAGATGAAAGCAAGCGATGTGTGTGCATACAAACAATGACGTACGAAAGAACATGTCGTTCTCAAGGAAGAAAAACAAAATTAGTAGGTGAAAGAAAATTGGTAGTTGATTTGTTCATATCCATTGGTACGGAGCTTTATGGGAGGAGCATTTCTATCATCCTTAAGGTACAAAC
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| CDS seq | ATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGA |
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| Protein seq | MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRDCVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF |
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| Function | E3 ubiquitin-protein ligase RNF12 [UniProtKB/Swiss-Prot:Q07G42] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_04G0152200 | OsZS97_04T0152200.1 | Chr04 | 9714863 | 9716268 | - | makerRMon | ||
| CDS seq | ATGAGCTACCTCCTCTCCTACATCTCCAAGATGCTGTGCATCAAGATTCCGTCGGAGGCGAGGCAAGCCAGCGAGGACGGCGGCAGCGGTGGCCTGACGGAGTGCTCCGTCTGTCTCTCCAGGATCCGCGTCGGCGAGGCGACGAGGCGTCTGCCCTGCCGGCATGCGTTCCACCGGGACTGCGTCGACCGGTGGCTCCTCTCATGCAGGCGGACGTGCCCGCTTTGCCGGGTTTACGTCGTCGTCGACGGTAACAAGCCAGGGGTGGCAGCGAAGCACACCGGCGAGCCGCCGCTCGCTGAAGACATGGTGATCTGGTTCTCTGCCATGCTCGTCCCTGGATTCTGA
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| Protein seq | MSYLLSYISKMLCIKIPSEARQASEDGGSGGLTECSVCLSRIRVGEATRRLPCRHAFHRDCVDRWLLSCRRTCPLCRVYVVVDGNKPGVAAKHTGEPPLAEDMVIWFSAMLVPGF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.18822 | 0.1587945 | 0.240386 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_04g0243700 | RBH | 0.0 | 0.000000 | 2.300112 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g16970 | RBH | 0.0 | 0.000000 | 0.389713 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0243700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0005180 | RBH | 0.0 | 23.536509 | 0.824717 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0005820 | RBH | 0.0 | 8.785997 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0005560 | RBH | 0.000000 | 18.637341 | 5.181437 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0005230 | RBH | 0.0 | 0.079159 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0005230 | RBH | 0.0 | 0.0 | 9.193150 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0140000 | RBH | 7.929576 | 1.450647 | 1.3447465 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0005290 | RBH | 0.0 | 0.494292 | 0.753311 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0005090 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0005440 | RBH | 0.0 | 4.814665 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0005190 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0005010 | RBH | 0.146990 | 0.685846 | 0.731889 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0005340 | RBH | 0.0 | 7.578326 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G005370 | RBH | 0.0 | 1.372572 | 3.791477 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0005190 | RBH | 0.0 | 0.0 | 7.849388 |
