Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_03G0480300 | OGI:03076060 | 3/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr03:30613699-30615995 | ||||||||
| Gene Symbol | CIPK27, OsCIPK27, OsSnRK3.30, SnRK3.30 | ||||||||||
| DNA seq | TCATTCCGATGCGCCCGGGTCGCCGGCCTCGTCGTCACTGTCGTCTGCACCACTGGCGTCGCCCTCCTCGTCGGAGTTAGGGGCGAACGCGAGCCGAGGGGCCGAGCCCTCGAAGCTGTGGACGATGTGGTCGGCGGCTTCCCGGACCCGCGCGCGCGCGTCGTCCTCGGTCCCGGGAGGGAACTCATCCAGCGCCATCCATGGAGAGAAGTTGGGGTCCCTGGCCTGGTAACTCGCTAGTACGAGTTCGACCGCTCCTTGGGCGAGGTCCCTCGAGGATGACTTGATGGTCTTCTCGAGCTCCTCGGGGAGTTGTTGGAGAGCCCAGGCCATCTTCGTGAGGTGCGGAACGAGGCCTTCCAGATTGGTGGGGTGCGTCATTGTCTGGCCTTTCCAGAGGCCCGCTTGCCGACCGGCGCGATCCAGGCGGGAGACCGCATCCCAAAGCATGCCGGGCCCTATCTCGCCCGCCAAGCGGAGGGCCTCGACCTCCCCGGCGGATGAGTCTAGGGTGCGCTGCATGTCGGCGATGGTGTGCTCGGCAGCTGCGAGGCGGGCGGCTAAGTCGCTTTCGCCCGCAGCCGCCCCACCGATGCGCACCCTCGCGTCCAGCTCTTTTTCCCGCGCCTCGAGGTCAGCAGCCCGCTGCTCCAGTGCGGCTCTCTCGGCGCGGACGCATTCCAGATTGCGGCGCGCCTGCTCCTCCTGCGCTGCCTCGCGGAGGGACAGGCTGTCCGCCAGCTGTTGCGCCGCGGCCTCGGCCTCCTCGAGAGCTCGCTCCCGCTCAGCGAGTGCGTCCTCGCGGAGGCGGAGCCCGGACTCCTCTTCGGCGCAGGCGGCCTCGTGTACCGCCAGCGTTACCTCCCGGATAGCGGCGGCGGCCTCGCGGTCCGCTAAGCCCCTCTCCACGGCGCCGGCGTGTTCTTCCAGTGCCATGGCACGGGCCTCAAGGGCCTCCTCGCGCCGCCGGGACACCGCTTCAGCCTCCGTTGCCCGCCGCTCTCGGGCAGCGGCGGTGTCAAGGACCCCCTGGGCGGCGTCGAGCTTTTTCTTTAGCTCCGCCTCCCAGCTCCTGTGTTGAAGGCGGAGGGCGTCCTGCGCCTCGATCATCGCGGTGGTGGCGATGAGGGTGGCCTCCCGCTCCTCCTCCACCTCTCGGGCGATCTCCGCCAGCGCCGCTTTGTGGGCTTCAAGCTCCGAGATGTGACGGCGGTGAGCCTTACGGCCCACCTCCACCATGACGTCCACCGAGCGCCGCCCCTCCTCGACACGCGCCCATGCGGCCTCGAGCTCTGCTCGTTCCGCTCGCAGGGCCTCCACCTGGGCGCTGAACCCATCTAGCACCGCGGTGTTTGCGGCGGCCAAGGCCTGCAGAAGGGGCTCGGCGCTCAGCGGGGCGACAGAAGACGAGGAGAAGAGCCGCCTTGGAGAGAATGCGACGCGGCTCGGCCCGCCGGAGGACGCGCTGGGCTCGGGGATGTCCCCCGGACCCGTTTGGTCCTGGGCGTCGCCCGAGGGAGTGGGCCCAAGCGACGCGCCAGCGGCTTTGTCACGAGCTGCCTCGGAAGACGCCATCGCCTCAGCCTGGCGAGCCCGGGCGGCCTCCTCCTGGGCGGCTTCCTCAGCCTGACGAACCCGGGCGGCCTCCTCCTTAGCAGCTTCTTCGGCTTGGCGAGCCCGGGCGGCCTCCCGGGCGGCCTCTTCAGCTTCCCGAAGGCGATCTGCGGCCTCTCGCCGGTCAGATTCTCGCCTCCGTTCCTCTGCGGCCGCCGGATCTTCGGCCTCGGACTGACCGGACTTGGGATGGCGGGAGGAACGCGACGGGACATCCCTGAAGTAGAAGAAAAAACCAGAAGACAAACAGGATGGGTAAGAGAAAACTTGCTTTTGGGATAGAAGAAAGACGGTCGCAATGAGAGTGGGACGAACCTGCGAGGGGGTCGGTTAAATGACCACCTGGGAGGGGAAATCAGGTTTCCCCGGGATGGTTCCGTCTCCCCCATCTTGCGGAGCCGCTTCTTCTTGCGCTCCCCCTCGGGCTGCGATGTCGGCGCGGCCCCCTCCGGGCGCCGACTGCTGGCACGCACCGCCCCGCCCCCTCGGGGAGGAGATGGGGGAGGTGTTCCTCCTAGCTTCCTCTTCCCCTGGGCGTCGGCAGGGCGGCTGCTTCCCGAGCCCCCGACGCGGGGCCCAGAAGCACGACCCCCTCCTGGGGTAGATTGTTCCCCCCGGCGGCTCTCGCCCACACCATCGTGGCCCTTAGGAGTTTCCTCCTCTGAGGCCCCGACCCCCGTCAT
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| CDS seq | ATGACGGGGGTCGGGGCCTCAGAGGAGGAAACTCCTAAGGGCCACGATGGTGTGGGCGAGAGCCGCCGGGGGGAACAATCTACCCCAGGAGGGGGTCGTGCTTCTGGGCCCCGCGTCGGGGGCTCGGGAAGCAGCCGCCCTGCCGACGCCCAGGGGAAGAGGAAGCTAGGAGGAACACCTCCCCCATCTCCTCCCCGAGGGGGCGGGGCGGTGCGTGCCAGCAGTCGGCGCCCGGAGGGGGCCGCGCCGACATCGCAGCCCGAGGGGGAGCGCAAGAAGAAGCGGCTCCGCAAGATGGGGGAGACGGAACCATCCCGGGGAAACCTGATTTCCCCTCCCAGGTGGTCATTTAACCGACCCCCTCGCAGGGATGTCCCGTCGCGTTCCTCCCGCCATCCCAAGTCCGGTCAGTCCGAGGCCGAAGATCCGGCGGCCGCAGAGGAACGGAGGCGAGAATCTGACCGGCGAGAGGCCGCAGATCGCCTTCGGGAAGCTGAAGAGGCCGCCCGGGAGGCCGCCCGGGCTCGCCAAGCCGAAGAAGCTGCTAAGGAGGAGGCCGCCCGGGTTCGTCAGGCTGAGGAAGCCGCCCAGGAGGAGGCCGCCCGGGCTCGCCAGGCTGAGGCGATGGCGTCTTCCGAGGCAGCTCGTGACAAAGCCGCTGGCGCGTCGCTTGGGCCCACTCCCTCGGGCGACGCCCAGGACCAAACGGGTCCGGGGGACATCCCCGAGCCCAGCGCGTCCTCCGGCGGGCCGAGCCGCGTCGCATTCTCTCCAAGGCGGCTCTTCTCCTCGTCTTCTGTCGCCCCGCTGAGCGCCGAGCCCCTTCTGCAGGCCTTGGCCGCCGCAAACACCGCGGTGCTAGATGGGTTCAGCGCCCAGGTGGAGGCCCTGCGAGCGGAACGAGCAGAGCTCGAGGCCGCATGGGCGCGTGTCGAGGAGGGGCGGCGCTCGGTGGACGTCATGGTGGAGGTGGGCCGTAAGGCTCACCGCCGTCACATCTCGGAGCTTGAAGCCCACAAAGCGGCGCTGGCGGAGATCGCCCGAGAGGTGGAGGAGGAGCGGGAGGCCACCCTCATCGCCACCACCGCGATGATCGAGGCGCAGGACGCCCTCCGCCTTCAACACAGGAGCTGGGAGGCGGAGCTAAAGAAAAAGCTCGACGCCGCCCAGGGGGTCCTTGACACCGCCGCTGCCCGAGAGCGGCGGGCAACGGAGGCTGAAGCGGTGTCCCGGCGGCGCGAGGAGGCCCTTGAGGCCCGTGCCATGGCACTGGAAGAACACGCCGGCGCCGTGGAGAGGGGCTTAGCGGACCGCGAGGCCGCCGCCGCTATCCGGGAGGTAACGCTGGCGGTACACGAGGCCGCCTGCGCCGAAGAGGAGTCCGGGCTCCGCCTCCGCGAGGACGCACTCGCTGAGCGGGAGCGAGCTCTCGAGGAGGCCGAGGCCGCGGCGCAACAGCTGGCGGACAGCCTGTCCCTCCGCGAGGCAGCGCAGGAGGAGCAGGCGCGCCGCAATCTGGAATGCGTCCGCGCCGAGAGAGCCGCACTGGAGCAGCGGGCTGCTGACCTCGAGGCGCGGGAAAAAGAGCTGGACGCGAGGGTGCGCATCGGTGGGGCGGCTGCGGGCGAAAGCGACTTAGCCGCCCGCCTCGCAGCTGCCGAGCACACCATCGCCGACATGCAGCGCACCCTAGACTCATCCGCCGGGGAGGTCGAGGCCCTCCGCTTGGCGGGCGAGATAGGGCCCGGCATGCTTTGGGATGCGGTCTCCCGCCTGGATCGCGCCGGTCGGCAAGCGGGCCTCTGGAAAGGCCAGACAATGACGCACCCCACCAATCTGGAAGGCCTCGTTCCGCACCTCACGAAGATGGCCTGGGCTCTCCAACAACTCCCCGAGGAGCTCGAGAAGACCATCAAGTCATCCTCGAGGGACCTCGCCCAAGGAGCGGTCGAACTCGTACTAGCGAGTTACCAGGCCAGGGACCCCAACTTCTCTCCATGGATGGCGCTGGATGAGTTCCCTCCCGGGACCGAGGACGACGCGCGCGCGCGGGTCCGGGAAGCCGCCGACCACATCGTCCACAGCTTCGAGGGCTCGGCCCCTCGGCTCGCGTTCGCCCCTAACTCCGACGAGGAGGGCGACGCCAGTGGTGCAGACGACAGTGACGACGAGGCCGGCGACCCGGGCGCATCGGAATGA
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| Protein seq | MTGVGASEEETPKGHDGVGESRRGEQSTPGGGRASGPRVGGSGSSRPADAQGKRKLGGTPPPSPPRGGGAVRASSRRPEGAAPTSQPEGERKKKRLRKMGETEPSRGNLISPPRWSFNRPPRRDVPSRSSRHPKSGQSEAEDPAAAEERRRESDRREAADRLREAEEAAREAARARQAEEAAKEEAARVRQAEEAAQEEAARARQAEAMASSEAARDKAAGASLGPTPSGDAQDQTGPGDIPEPSASSGGPSRVAFSPRRLFSSSSVAPLSAEPLLQALAAANTAVLDGFSAQVEALRAERAELEAAWARVEEGRRSVDVMVEVGRKAHRRHISELEAHKAALAEIAREVEEEREATLIATTAMIEAQDALRLQHRSWEAELKKKLDAAQGVLDTAAARERRATEAEAVSRRREEALEARAMALEEHAGAVERGLADREAAAAIREVTLAVHEAACAEEESGLRLREDALAERERALEEAEAAAQQLADSLSLREAAQEEQARRNLECVRAERAALEQRAADLEAREKELDARVRIGGAAAGESDLAARLAAAEHTIADMQRTLDSSAGEVEALRLAGEIGPGMLWDAVSRLDRAGRQAGLWKGQTMTHPTNLEGLVPHLTKMAWALQQLPEELEKTIKSSSRDLAQGAVELVLASYQARDPNFSPWMALDEFPPGTEDDARARVREAADHIVHSFEGSAPRLAFAPNSDEEGDASGADDSDDEAGDPGASE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_03G0480300 | OsZS97_03T0480300.1 | Chr03 | 30613699 | 30615995 | - | makerRMon | ||
| CDS seq | ATGACGGGGGTCGGGGCCTCAGAGGAGGAAACTCCTAAGGGCCACGATGGTGTGGGCGAGAGCCGCCGGGGGGAACAATCTACCCCAGGAGGGGGTCGTGCTTCTGGGCCCCGCGTCGGGGGCTCGGGAAGCAGCCGCCCTGCCGACGCCCAGGGGAAGAGGAAGCTAGGAGGAACACCTCCCCCATCTCCTCCCCGAGGGGGCGGGGCGGTGCGTGCCAGCAGTCGGCGCCCGGAGGGGGCCGCGCCGACATCGCAGCCCGAGGGGGAGCGCAAGAAGAAGCGGCTCCGCAAGATGGGGGAGACGGAACCATCCCGGGGAAACCTGATTTCCCCTCCCAGGTGGTCATTTAACCGACCCCCTCGCAGGGATGTCCCGTCGCGTTCCTCCCGCCATCCCAAGTCCGGTCAGTCCGAGGCCGAAGATCCGGCGGCCGCAGAGGAACGGAGGCGAGAATCTGACCGGCGAGAGGCCGCAGATCGCCTTCGGGAAGCTGAAGAGGCCGCCCGGGAGGCCGCCCGGGCTCGCCAAGCCGAAGAAGCTGCTAAGGAGGAGGCCGCCCGGGTTCGTCAGGCTGAGGAAGCCGCCCAGGAGGAGGCCGCCCGGGCTCGCCAGGCTGAGGCGATGGCGTCTTCCGAGGCAGCTCGTGACAAAGCCGCTGGCGCGTCGCTTGGGCCCACTCCCTCGGGCGACGCCCAGGACCAAACGGGTCCGGGGGACATCCCCGAGCCCAGCGCGTCCTCCGGCGGGCCGAGCCGCGTCGCATTCTCTCCAAGGCGGCTCTTCTCCTCGTCTTCTGTCGCCCCGCTGAGCGCCGAGCCCCTTCTGCAGGCCTTGGCCGCCGCAAACACCGCGGTGCTAGATGGGTTCAGCGCCCAGGTGGAGGCCCTGCGAGCGGAACGAGCAGAGCTCGAGGCCGCATGGGCGCGTGTCGAGGAGGGGCGGCGCTCGGTGGACGTCATGGTGGAGGTGGGCCGTAAGGCTCACCGCCGTCACATCTCGGAGCTTGAAGCCCACAAAGCGGCGCTGGCGGAGATCGCCCGAGAGGTGGAGGAGGAGCGGGAGGCCACCCTCATCGCCACCACCGCGATGATCGAGGCGCAGGACGCCCTCCGCCTTCAACACAGGAGCTGGGAGGCGGAGCTAAAGAAAAAGCTCGACGCCGCCCAGGGGGTCCTTGACACCGCCGCTGCCCGAGAGCGGCGGGCAACGGAGGCTGAAGCGGTGTCCCGGCGGCGCGAGGAGGCCCTTGAGGCCCGTGCCATGGCACTGGAAGAACACGCCGGCGCCGTGGAGAGGGGCTTAGCGGACCGCGAGGCCGCCGCCGCTATCCGGGAGGTAACGCTGGCGGTACACGAGGCCGCCTGCGCCGAAGAGGAGTCCGGGCTCCGCCTCCGCGAGGACGCACTCGCTGAGCGGGAGCGAGCTCTCGAGGAGGCCGAGGCCGCGGCGCAACAGCTGGCGGACAGCCTGTCCCTCCGCGAGGCAGCGCAGGAGGAGCAGGCGCGCCGCAATCTGGAATGCGTCCGCGCCGAGAGAGCCGCACTGGAGCAGCGGGCTGCTGACCTCGAGGCGCGGGAAAAAGAGCTGGACGCGAGGGTGCGCATCGGTGGGGCGGCTGCGGGCGAAAGCGACTTAGCCGCCCGCCTCGCAGCTGCCGAGCACACCATCGCCGACATGCAGCGCACCCTAGACTCATCCGCCGGGGAGGTCGAGGCCCTCCGCTTGGCGGGCGAGATAGGGCCCGGCATGCTTTGGGATGCGGTCTCCCGCCTGGATCGCGCCGGTCGGCAAGCGGGCCTCTGGAAAGGCCAGACAATGACGCACCCCACCAATCTGGAAGGCCTCGTTCCGCACCTCACGAAGATGGCCTGGGCTCTCCAACAACTCCCCGAGGAGCTCGAGAAGACCATCAAGTCATCCTCGAGGGACCTCGCCCAAGGAGCGGTCGAACTCGTACTAGCGAGTTACCAGGCCAGGGACCCCAACTTCTCTCCATGGATGGCGCTGGATGAGTTCCCTCCCGGGACCGAGGACGACGCGCGCGCGCGGGTCCGGGAAGCCGCCGACCACATCGTCCACAGCTTCGAGGGCTCGGCCCCTCGGCTCGCGTTCGCCCCTAACTCCGACGAGGAGGGCGACGCCAGTGGTGCAGACGACAGTGACGACGAGGCCGGCGACCCGGGCGCATCGGAATGA
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| Protein seq | MTGVGASEEETPKGHDGVGESRRGEQSTPGGGRASGPRVGGSGSSRPADAQGKRKLGGTPPPSPPRGGGAVRASSRRPEGAAPTSQPEGERKKKRLRKMGETEPSRGNLISPPRWSFNRPPRRDVPSRSSRHPKSGQSEAEDPAAAEERRRESDRREAADRLREAEEAAREAARARQAEEAAKEEAARVRQAEEAAQEEAARARQAEAMASSEAARDKAAGASLGPTPSGDAQDQTGPGDIPEPSASSGGPSRVAFSPRRLFSSSSVAPLSAEPLLQALAAANTAVLDGFSAQVEALRAERAELEAAWARVEEGRRSVDVMVEVGRKAHRRHISELEAHKAALAEIAREVEEEREATLIATTAMIEAQDALRLQHRSWEAELKKKLDAAQGVLDTAAARERRATEAEAVSRRREEALEARAMALEEHAGAVERGLADREAAAAIREVTLAVHEAACAEEESGLRLREDALAERERALEEAEAAAQQLADSLSLREAAQEEQARRNLECVRAERAALEQRAADLEAREKELDARVRIGGAAAGESDLAARLAAAEHTIADMQRTLDSSAGEVEALRLAGEIGPGMLWDAVSRLDRAGRQAGLWKGQTMTHPTNLEGLVPHLTKMAWALQQLPEELEKTIKSSSRDLAQGAVELVLASYQARDPNFSPWMALDEFPPGTEDDARARVREAADHIVHSFEGSAPRLAFAPNSDEEGDASGADDSDDEAGDPGASE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0058725 | 0.0372715 | 0.00551 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g52820 | SBH | 1.102912 | 1.145776 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0041681 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0463500 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0483800 | SBH | 0 | 0 | 0.003948 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
